mRNA_E-siliculosus-1a_F_contig1026.227.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1026.227.1
Unique NamemRNA_E-siliculosus-1a_F_contig1026.227.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1026.227.1 vs. uniprot
Match: D7FNB4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNB4_ECTSI)

HSP 1 Score: 358 bits (918), Expect = 9.640e-121
Identity = 183/190 (96.32%), Postives = 184/190 (96.84%), Query Frame = 1 
Query:    1 MPAATAHKVSASNHKLYHEALRFTTIYVYLDVAYATLLLAAALHLSGVPVGLILGLDVPLKKSEAGGEGGLVRSGALSLATAGVMGLLVGVMVRGCCRLDKSQGCVVTNWHDLLKYTHMGRTITAAMCGVLTWRGLGSLKDFHAPEGGIGLVPAVLITAAVLSLAAAASMNFLHFRMKGVLTEYAKLKRT 570
            MPAATAHKVSASNHKLYHEALRFTTIYVYLDVAYATLLLAAALHLSGVPVGLILGLDVPLKKSEAGGEGGLVRSGALSLATAGVMGLLVGVMVRGCCR DKS GCVVTNWHDLLKYTHMGRTITAAMC VLTWRGLGSLKDF  PEGG+GLVPAVLI AAVLSLAAAASMNFLHFRMKGVLTEYAKLKRT
Sbjct:    1 MPAATAHKVSASNHKLYHEALRFTTIYVYLDVAYATLLLAAALHLSGVPVGLILGLDVPLKKSEAGGEGGLVRSGALSLATAGVMGLLVGVMVRGCCRFDKSHGCVVTNWHDLLKYTHMGRTITAAMCAVLTWRGLGSLKDFQIPEGGVGLVPAVLIAAAVLSLAAAASMNFLHFRMKGVLTEYAKLKRT 190
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1026.227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNB4_ECTSI9.640e-12196.32Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1026contigE-siliculosus-1a_F_contig1026:21003..24821 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size573
Model size1292
Exons4
Ec32 orthologEc-24_000130.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1026.227.1prot_E-siliculosus-1a_F_contig1026.227.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1026 21722..24821 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927529.4769125-UTR-E-siliculosus-1a_F_contig1026:21002..217211622927529.4769125-UTR-E-siliculosus-1a_F_contig1026:21002..21721Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1026 21003..21721 -
1696318570.0073245-UTR-E-siliculosus-1a_F_contig1026:21002..217211696318570.0073245-UTR-E-siliculosus-1a_F_contig1026:21002..21721Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1026 21003..21721 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927529.4933162-CDS-E-siliculosus-1a_F_contig1026:21721..217661622927529.4933162-CDS-E-siliculosus-1a_F_contig1026:21721..21766Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1026 21722..21766 -
1696318570.0163782-CDS-E-siliculosus-1a_F_contig1026:21721..217661696318570.0163782-CDS-E-siliculosus-1a_F_contig1026:21721..21766Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1026 21722..21766 -
1622927529.510539-CDS-E-siliculosus-1a_F_contig1026:22359..225001622927529.510539-CDS-E-siliculosus-1a_F_contig1026:22359..22500Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1026 22360..22500 -
1696318570.026066-CDS-E-siliculosus-1a_F_contig1026:22359..225001696318570.026066-CDS-E-siliculosus-1a_F_contig1026:22359..22500Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1026 22360..22500 -
1622927529.5263646-CDS-E-siliculosus-1a_F_contig1026:23613..237241622927529.5263646-CDS-E-siliculosus-1a_F_contig1026:23613..23724Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1026 23614..23724 -
1696318570.0352578-CDS-E-siliculosus-1a_F_contig1026:23613..237241696318570.0352578-CDS-E-siliculosus-1a_F_contig1026:23613..23724Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1026 23614..23724 -
1622927529.542389-CDS-E-siliculosus-1a_F_contig1026:24545..248211622927529.542389-CDS-E-siliculosus-1a_F_contig1026:24545..24821Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1026 24546..24821 -
1696318570.047148-CDS-E-siliculosus-1a_F_contig1026:24545..248211696318570.047148-CDS-E-siliculosus-1a_F_contig1026:24545..24821Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1026 24546..24821 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1026.227.1

>prot_E-siliculosus-1a_F_contig1026.227.1 ID=prot_E-siliculosus-1a_F_contig1026.227.1|Name=mRNA_E-siliculosus-1a_F_contig1026.227.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=191bp
MPAATAHKVSASNHKLYHEALRFTTIYVYLDVAYATLLLAAALHLSGVPV
GLILGLDVPLKKSEAGGEGGLVRSGALSLATAGVMGLLVGVMVRGCCRLD
KSQGCVVTNWHDLLKYTHMGRTITAAMCGVLTWRGLGSLKDFHAPEGGIG
LVPAVLITAAVLSLAAAASMNFLHFRMKGVLTEYAKLKRT*
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mRNA from alignment at E-siliculosus-1a_F_contig1026:21003..24821-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1026.227.1 ID=mRNA_E-siliculosus-1a_F_contig1026.227.1|Name=mRNA_E-siliculosus-1a_F_contig1026.227.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3819bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1026:21003..24821- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCCGCAGCAACAGCTCACAAGGTGTCTGCCTCTAACCACAAGCTGTA
CCACGAGGCCCTCAGGTTCACGACCATCTACGTCTACTTGGACGTAGCGT
ACGCGACGCTGCTCTTGGCGGCAGCGCTGCACCTCAGTGGGGTGCCTGTG
GGTCTGATCCTGGGGCTAGATGTGCCGCTCAAGAAGTCAGAGGCTGGGGG
GGAAGGGGGGTTGGTGCGATCGGGGGCCCTGAGCTTAGCCACTGCCGGGG
TGATGGGTCTCCTGGTTGGTGTTATGGTGAGCCTCCCTCCGAGTACAGCG
GCACACAGCGCACGAAGTACTGCGGTACTGCCTCGAGTGTTCCCACAACC
ACCTCTCTCTCGTTGTCGTGTTAACCCTAACCCTAACCCTAGCCCTTAGC
GTCGCACCTTCTCGTAGAGCGGCGACGCTCTCGCCAGAGGACCCGCGGTT
TTCTGGAGTAAACACTATCTACATAGCTTGGCGTCATATGGGAGATCTCG
CTCGCACTCTCGGCAGAAAATGCAGACTATGTAGACGTTTAGTGCGGCTG
GGCTGTTGCCCCGCTATCAGCGTGAACCTACGATTCGCCAGAGAGCGTTG
CACGACACTACAGCAGTACACGAACAGCGGTAGCCTCCCTGGTATGCATG
TGTTATGGTCGTAGTATTGATCACGTTTTGATCAGGTTGCGGCTGCGATT
GCGACTGCAGAGCTGCCGACTTGTATTTATTCCAACCCTGCACCAGTACC
AGTGATAGAGCCAGCGTGCCAAACTTTTGCAACACTGCCCAACTTGCACT
GCCTGCCGCCGTTTGATGCTCTGTATGCAGGACGCAAGGCTTGCTCCTGT
TGAAAGCAGCAGAATAGCTCAGCTGGGGTGGCCGTAAGCCGCTCGAACAT
AGGGTGCCTTGATCCTCGACCCGTCGTTGAAACCGTCGCATCGGCCTGCC
GCGCCGCGAGTCACAAGCCCTCCTCGCCTTTCGACCAAAACCGTTCGTGC
GTGCTCGACTCTACGGTTGCCATGTGGGACTGATGTTGCCTGCCCCATGC
ATGCACGGCTTGAAACCTTTTGTTCTTCGCACGGCGTGGCCCGGCAGGTT
CGAGGGTGCTGTCGCCTCGACAAGAGCCAGGGGTGCGTGGTAACCAACTG
GCACGACCTGCTCAAGTACACGCACATGGGCAGGACGATAACCGCAGCGA
TGTGCGGGGTGAGCCAACACTTTTGCAGTCCCGCAGCAGCCGGAATACAT
AGTCTAGATGCGCTCCTAACTAGTTGCAGAGACCGCGGTTCGCGCCTGGC
AGACTGCGCCTACGGGGCGCGTTCATGGATGAGCGCGATGAGTTCCAAGG
ATGCACGTCATGGTTAATACTCCATAACAGTTGCCGCGAGAGGATAGGGG
AGTCCTGTTCGAGAAAAGCCTTGCCTCGGAATACACTTCTAAACGGCCCC
ATGGTTCGACGTGCATGCCGGGTGGGTTCGATATAGATGCCGGCAATGGC
GGCCTGTCTTTTTTGGGAGGGCGACGACTCCTCCCGACCACTTACTGCAG
GAGGGAAATGGGGGCTACGCAAGAGGGCGCGTAAAAGCATATGGCGAAAT
GATATTTTAGTTGCCAGTTCGAAGTAGTTTCCATGTTGGAGCTTGAAGGC
ATGTTTCTTGTTCTTGATCGCGGGCGTTAACTACCGTAATTGCTAGGTGG
CCTTCCGAGCCTCGCGTTTTCGGGCATCAGCCGCTCCTGTGTTCGAGACT
AAATAATATGTAGCAAGACGGACGTCGTGTCCTTACCGTGGCGAGCCTGG
TGATGGATGCGCTCACAGCTGTACAGCTATGCATAGCTCTTTTTTTTTGG
AACGAACCTCATGTTTCCGTCCCACTCATCCCTCGCAACCAACGTGTGCC
TCATCGTGCCCGTAGTCCCGACCACGTGAAAATTTGGGTATCGCAGGTGC
AGGCGACACCACGCGAACGGTACTGTGAGAAATATGCGTAATCGTGTTTG
TGTGTCCGTGTGTTTTTTTTTTGGGGGGGGGCTGGAGGGAAGACATGTTT
CCAAACGCGTTCGGACACCACAACCCCCGGGGTGAGGACATGAGCGCTCG
AGACAAGAGGGATAGCGCCATGGTCTAAGCGGCGAACAAGTTTACCAGTA
AAAGGTCCAGGACCTACCCACCTATTGTGGCTGGTAGGGACGATGGTGTG
TCTCGCCTGGCGCGGATCATGTCGATTATTGGATTTTGCTTTAGCTCCGA
CCTGCACCGCTCTTGCTCCTACCCCCGTGTCGACGACGTCTGACTACCGG
CCTGGCTCTGCTCTCGTCCAGGTCTTGACATGGCGAGGGCTAGGCTCCTT
GAAGGACTTCCACGCCCCGGAGGGTGGGATAGGACTAGTCCCAGCTGTGC
TCATCACCGCCGCGGTCTTGAGCTTGGCGGCAGCAGCGTCCATGAACTTC
CTGCACTTCAGAGTGAGAACATCACACGAAATGACCGTGTCCGCGGAGGT
TGAGTTGTCACCAGAACCATACTTTTGCTATTCGCGCTGGCCGACATCGT
CGCCGCCTACCTCTCTCGCTCCTGTGTCGCGTCTACACCAGAAGCTGTTG
TGGTCGCATTCTGCCAACGAGTGTCACTCATGGTGACAAGGGCCTTTGTT
TATTTGTTCTTGGCGTACATGCCCTCTAGTTGCGGGGAGACGTTCCTCAA
CCGTAAACAAGAGTATTGGAGGAGGCACGGGGTGGAATAGAACAAAGTAC
ACTCCGAACGGGTTTCAAACGCGAGAGGACATTCCCACCAAAAGCACCAG
CAGCAGCCGCAAACCAGGTTTCCTGTTGCATGGTGACTAGACTAAACTAG
CCTGAGGTTTAGTTGGTGGTGAGAGCCGACCAGCTTTTCTGTTGCCTGTG
GACTCTAATACAACTAGAGATCGATGTCGAGCGTCAAGCGATCTTTGTGG
GGTGAGTGTGCAATATACAGAAACCACACATACATGCTGGCTTACAATAA
TAACTTCCTCCGTCGCACCTCCGCCCCGCTCACCCGCCCCCCGTCGCCGT
TCCAGATGAAAGGCGTGCTGACGGAGTACGCCAAGCTCAAGCGCACATGA
CTCATGCCGGCCACCCGCCGCTAGTTTTACGCGTCATTGTAGCTAACATC
GTCGGGGGCACAAACAACAGTTCAAGCAAAGGGGGGTTGTTTGACTCCGT
AACATGTACAGGTCGTTGATGGATGTTGACGGGAAAACACTTCCACCGAG
GTAGATCTTACTTCAGTGCAGCCCTCGATGTTAATCTAACCACCCATTGC
TCGACTGTCGACAAGGAAAGAACGGGGAGACAGACGTGTGCCGTGGTTCA
GCCACCATGGATGTATTTCGCGGCCAGAGTGAGAATGAATCTTGTGTCAA
AACTGTTGATACATCAGGGACTTGTTGTGCGGACGCCTCCGCAGCATCGG
ACGAACTTGTGCGTGTGCGTTGGGACGTTGGACCTGGGTAGTGGGATGAG
GGGCACACTCGGTTGATGGAGTGCAGGGATGGATGGATCCATCGAAAGCA
TCAGGACAGGGATTGCTGCGCGTCTTGGTTGAGCCTTTGTAGGACTGTGT
AGAACACGCGTACCGATAAGTGATACTGTTGGTTTTGTGTTTGGATGGTG
AGTCTAACAATATATCGGAGATCGCACAGCGGCCAGTGTTGTAGACATCT
GATTCTGTACGCCTCGGGTGAAATAGTGTATTTTCAAGGACGGTCGAGCT
TGGGCCCCTCTCGGCCAAGCATTCATATTTTCTTCTTTCTGGCGTAATTT
TTTTTTTCGCATAGCCCCG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1026:21003..24821-

>mRNA_E-siliculosus-1a_F_contig1026.227.1 ID=mRNA_E-siliculosus-1a_F_contig1026.227.1|Name=mRNA_E-siliculosus-1a_F_contig1026.227.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1146bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1026:21003..24821- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCCGCAGCAACAGCTCACAAGGTGTCTGCCTCTAACCACAAGCTGTA
CCACGAGGCCCTCAGGTTCACGACCATCTACGTCTACTTGGACGTAGCGT
ACGCGACGCTGCTCTTGGCGGCAGCGCTGCACCTCAGTGGGGTGCCTGTG
GGTCTGATCCTGGGGCTAGATGTGCCGCTCAAGAAGTCAGAGGCTGGGGG
GGAAGGGGGGTTGGTGCGATCGGGGGCCCTGAGCTTAGCCACTGCCGGGG
TGATGGGTCTCCTGGTTGGTGTTATGATGCCCGCAGCAACAGCTCACAAG
GTGTCTGCCTCTAACCACAAGCTGTACCACGAGGCCCTCAGGTTCACGAC
CATCTACGTCTACTTGGACGTAGCGTACGCGACGCTGCTCTTGGCGGCAG
CGCTGCACCTCAGTGGGGTGCCTGTGGGTCTGATCCTGGGGCTAGATGTG
CCGCTCAAGAAGTCAGAGGCTGGGGGGGAAGGGGGGTTGGTGCGATCGGG
GGCCCTGAGCTTAGCCACTGCCGGGGTGATGGGTCTCCTGGTTGGTGTTA
TGGTTCGAGGGTGCTGTCGCCTCGACAAGAGCCAGGGGTGCGTGGTAACC
AACTGGCACGACCTGCTCAAGTACACGCACATGGGCAGGACGATAACCGC
AGCGATGTGCGGGGTTCGAGGGTGCTGTCGCCTCGACAAGAGCCAGGGGT
GCGTGGTAACCAACTGGCACGACCTGCTCAAGTACACGCACATGGGCAGG
ACGATAACCGCAGCGATGTGCGGGGTCTTGACATGGCGAGGGCTAGGCTC
CTTGAAGGACTTCCACGCCCCGGAGGGTGGGATAGGACTAGTCCCAGCTG
TGCTCATCACCGCCGCGGTCTTGAGCTTGGCGGCAGCAGCGTCCATGAAC
TTCCTGCACTTCAGAGTCTTGACATGGCGAGGGCTAGGCTCCTTGAAGGA
CTTCCACGCCCCGGAGGGTGGGATAGGACTAGTCCCAGCTGTGCTCATCA
CCGCCGCGGTCTTGAGCTTGGCGGCAGCAGCGTCCATGAACTTCCTGCAC
TTCAGAATGAAAGGCGTGCTGACGGAGTACGCCAAGCTCAAGCGCACATG
AATGAAAGGCGTGCTGACGGAGTACGCCAAGCTCAAGCGCACATGA
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