mRNA_E-siliculosus-1a_F_contig10257.225.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10257.225.1
Unique NamemRNA_E-siliculosus-1a_F_contig10257.225.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig10257.225.1 vs. uniprot
Match: D8LE94_ECTSI (Complex1_LYR_dom domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE94_ECTSI)

HSP 1 Score: 154 bits (390), Expect = 8.710e-45
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 2 
Query:    2 SPKGQQLRLILRTEFKKNMGETDPVKIEALKGGAIRGLSNYLVHESGSNDPQLKKRMEAVKTHALADLKQRQQERDGKR 238
            SPKGQQLRLILRTEFKKNMGETDPVKIEALKGGAIRGLSNYLVHESGSNDPQLKKRMEAVKTHALADLKQRQQERDGKR
Sbjct:   29 SPKGQQLRLILRTEFKKNMGETDPVKIEALKGGAIRGLSNYLVHESGSNDPQLKKRMEAVKTHALADLKQRQQERDGKR 107
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BLAST of mRNA_E-siliculosus-1a_F_contig10257.225.1 vs. uniprot
Match: A0A835Z7F8_9STRA (Complex1_LYR_dom domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7F8_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 2.910e-12
Identity = 34/75 (45.33%), Postives = 50/75 (66.67%), Query Frame = 2 
Query:    2 SPKGQQLRLILRTEFKKNMGETDPVKIEALKGGAIRGLSNYLVHESGSNDPQLKKRMEAVKTHALADLKQRQQER 226
            S KG  +R ++ TEF+K++ ETDP ++  LK  A+RGLSNY +HES S D +LK RME  +    A++ + Q+ R
Sbjct:   30 SAKGDAMRKMISTEFRKHIDETDPARVAILKAAAVRGLSNYFLHESASRDAKLKARMEDQRIAVQAEIGEEQRAR 104
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BLAST of mRNA_E-siliculosus-1a_F_contig10257.225.1 vs. uniprot
Match: A0A7S1ZML8_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZML8_TRICV)

HSP 1 Score: 67.4 bits (163), Expect = 1.430e-10
Identity = 31/68 (45.59%), Postives = 45/68 (66.18%), Query Frame = 2 
Query:    2 SPKGQQLRLILRTEFKKNMGETDPVKIEALKGGAIRGLSNYLVHESGSNDPQLKKRMEAVKTHALADL 205
            SPK   LR ++++EF KN  E DP KIE++K GAIR LSNY+++ESG+ D +L K M       ++ +
Sbjct:   55 SPKAMALRAMVQSEFSKNRDEKDPAKIESMKAGAIRALSNYMLYESGAKDQKLGKAMNKFNQDTISGI 122
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BLAST of mRNA_E-siliculosus-1a_F_contig10257.225.1 vs. uniprot
Match: R1E7M2_EMIHU (Complex1_LYR_dom domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1E7M2_EMIHU)

HSP 1 Score: 61.2 bits (147), Expect = 3.300e-8
Identity = 26/46 (56.52%), Postives = 35/46 (76.09%), Query Frame = 2 
Query:    2 SPKGQQLRLILRTEFKKNMGETDPVKIEALKGGAIRGLSNYLVHES 139
            SPKG+ +R ++R +FK NMGETDP KI  LK  AI G+ NY++HE+
Sbjct:   71 SPKGEAMRSMIRQQFKSNMGETDPTKINELKMRAISGIQNYVIHEN 116
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BLAST of mRNA_E-siliculosus-1a_F_contig10257.225.1 vs. uniprot
Match: A0A482SGE8_9ARCH (LYR motif-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SGE8_9ARCH)

HSP 1 Score: 60.8 bits (146), Expect = 3.380e-8
Identity = 29/55 (52.73%), Postives = 39/55 (70.91%), Query Frame = 2 
Query:    2 SPKGQQLRLILRTEFKKNMGETDPVKIEALKGGAIRGLSNYLVHESGSNDPQLKK 166
            S KG+ +R +LR EF+KN    DP KIE LK  A+RGL+NYL+ ES + D +L+K
Sbjct:   51 SQKGENIRRVLRHEFRKNAKLEDPAKIEQLKSNAVRGLANYLMIESATKDTKLQK 105
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BLAST of mRNA_E-siliculosus-1a_F_contig10257.225.1 vs. uniprot
Match: A0A7S3WS84_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WS84_EMIHU)

HSP 1 Score: 61.2 bits (147), Expect = 3.920e-8
Identity = 26/46 (56.52%), Postives = 35/46 (76.09%), Query Frame = 2 
Query:    2 SPKGQQLRLILRTEFKKNMGETDPVKIEALKGGAIRGLSNYLVHES 139
            SPKG+ +R ++R +FK NMGETDP KI  LK  AI G+ NY++HE+
Sbjct:   83 SPKGEAMRSMIRQQFKSNMGETDPTKINELKMRAISGIQNYVIHEN 128
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BLAST of mRNA_E-siliculosus-1a_F_contig10257.225.1 vs. uniprot
Match: R1CQ33_EMIHU (Complex1_LYR_dom domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CQ33_EMIHU)

HSP 1 Score: 61.2 bits (147), Expect = 4.930e-8
Identity = 26/46 (56.52%), Postives = 35/46 (76.09%), Query Frame = 2 
Query:    2 SPKGQQLRLILRTEFKKNMGETDPVKIEALKGGAIRGLSNYLVHES 139
            SPKG+ +R ++R +FK NMGETDP KI  LK  AI G+ NY++HE+
Sbjct:   96 SPKGEAMRSMIRQQFKSNMGETDPTKINELKMRAISGIQNYVIHEN 141
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BLAST of mRNA_E-siliculosus-1a_F_contig10257.225.1 vs. uniprot
Match: A0A024GHE4_9STRA (Phosphoribosylaminoimidazolesuccinocarboxamide synthase n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GHE4_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.380e-6
Identity = 30/59 (50.85%), Postives = 39/59 (66.10%), Query Frame = 2 
Query:    2 SPKGQQLRLILRTEFKKNMGETDPVKIEALKGGAIRGLSNYLVHESGSNDPQLKKRMEA 178
            S KG  ++ ++R EF K   ETDP KIE LKG A+RGLSNYLV  + S D  +K  M++
Sbjct:   62 SKKGLAIKELVRREFDKGKRETDPEKIEMLKGNAVRGLSNYLVMANASKDKGMKNAMKS 120
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BLAST of mRNA_E-siliculosus-1a_F_contig10257.225.1 vs. uniprot
Match: A0A2I0VL77_9ASPA (Complex1_LYR_dom domain-containing protein n=3 Tax=Epidendroideae TaxID=158332 RepID=A0A2I0VL77_9ASPA)

HSP 1 Score: 52.0 bits (123), Expect = 7.590e-6
Identity = 23/37 (62.16%), Postives = 30/37 (81.08%), Query Frame = 2 
Query:   29 ILRTEFKKNMGETDPVKIEALKGGAIRGLSNYLVHES 139
            ++R +FKKNM ETDPVKI+ LK  A RGL N+++HES
Sbjct:    1 MVRQQFKKNMHETDPVKIQKLKDDAARGLINHILHES 37
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BLAST of mRNA_E-siliculosus-1a_F_contig10257.225.1 vs. uniprot
Match: A0A1Y1IKT5_KLENI (Complex1_LYR_dom domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IKT5_KLENI)

HSP 1 Score: 50.1 bits (118), Expect = 9.370e-5
Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 2 
Query:   20 LRLILRTEFKKNMGETDPVKIEALKGGAIRGLSNYLVHES 139
            LR  +R +FKKNM E DP KI+A K  A+RGLSNY+V E+
Sbjct:   35 LREQVRLQFKKNMDERDPDKIQAQKEAAVRGLSNYMVFEA 74
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10257.225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D8LE94_ECTSI8.710e-45100.00Complex1_LYR_dom domain-containing protein n=2 Tax... [more]
A0A835Z7F8_9STRA2.910e-1245.33Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A7S1ZML8_TRICV1.430e-1045.59Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
R1E7M2_EMIHU3.300e-856.52Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A482SGE8_9ARCH3.380e-852.73LYR motif-containing protein n=1 Tax=archaeon TaxI... [more]
A0A7S3WS84_EMIHU3.920e-856.52Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
R1CQ33_EMIHU4.930e-856.52Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
A0A024GHE4_9STRA1.380e-650.85Phosphoribosylaminoimidazolesuccinocarboxamide syn... [more]
A0A2I0VL77_9ASPA7.590e-662.16Complex1_LYR_dom domain-containing protein n=3 Tax... [more]
A0A1Y1IKT5_KLENI9.370e-560.00Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10257contigE-siliculosus-1a_F_contig10257:669..2112 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size486
Model size714
Exons3
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10257.225.1prot_E-siliculosus-1a_F_contig10257.225.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10257 669..1885 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927529.1299746-CDS-E-siliculosus-1a_F_contig10257:668..7671622927529.1299746-CDS-E-siliculosus-1a_F_contig10257:668..767Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10257 669..767 +
1696318569.7671971-CDS-E-siliculosus-1a_F_contig10257:668..7671696318569.7671971-CDS-E-siliculosus-1a_F_contig10257:668..767Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10257 669..767 +
1622927529.1493883-CDS-E-siliculosus-1a_F_contig10257:1144..11891622927529.1493883-CDS-E-siliculosus-1a_F_contig10257:1144..1189Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10257 1145..1189 +
1696318569.7759385-CDS-E-siliculosus-1a_F_contig10257:1144..11891696318569.7759385-CDS-E-siliculosus-1a_F_contig10257:1144..1189Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10257 1145..1189 +
1622927529.1606944-CDS-E-siliculosus-1a_F_contig10257:1543..18851622927529.1606944-CDS-E-siliculosus-1a_F_contig10257:1543..1885Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10257 1544..1885 +
1696318569.7840767-CDS-E-siliculosus-1a_F_contig10257:1543..18851696318569.7840767-CDS-E-siliculosus-1a_F_contig10257:1543..1885Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10257 1544..1885 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927529.185563-UTR-E-siliculosus-1a_F_contig10257:1885..21121622927529.185563-UTR-E-siliculosus-1a_F_contig10257:1885..2112Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10257 1886..2112 +
1696318569.797176-UTR-E-siliculosus-1a_F_contig10257:1885..21121696318569.797176-UTR-E-siliculosus-1a_F_contig10257:1885..2112Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10257 1886..2112 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10257.225.1

>prot_E-siliculosus-1a_F_contig10257.225.1 ID=prot_E-siliculosus-1a_F_contig10257.225.1|Name=mRNA_E-siliculosus-1a_F_contig10257.225.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=162bp
EPQGAAAPSYPENRVQEEHGRDRPSQDRSAQGRRNTRIVKLLGARIGQQR
PATEKANGSSQDPRLGRPQATTTGTGREAVTASPLGCRSCPIPQKFTCRG
RTLLGSRVIDGLRAGSHFSVHVLVFLWDVNMSMVDDGSPAWSAGSSSSSG
CAEHIMMRTYP*
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mRNA from alignment at E-siliculosus-1a_F_contig10257:669..2112+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10257.225.1 ID=mRNA_E-siliculosus-1a_F_contig10257.225.1|Name=mRNA_E-siliculosus-1a_F_contig10257.225.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1444bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10257:669..2112+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GAGCCCCAAGGGGCAGCAGCTCCGTCTTATCCTGAGAACCGAGTTCAAGA
AGAACATGGGCGAGACCGACCCAGTCAAGATAGAAGCGCTCAAGGGAGGG
TGAGGCACGAAACATGATTTGTCGTTGAGAGTACCACACTATTTCTGTTG
TTCGCCCATTGAAGCTTGGGAGCATACCTTGGGCCGCTCACAGCAGAGGT
TATGTGCCTCTGTGATAGGTGCCTACGCATTCGTCCAGGAATGGGGCTGC
CTGTTCTCCGAGCAAAAAAAATTATCGCGGTTATTCGTCCAGCGGTTAAA
TTAGTGCACGACTTACGTGCTGTCCAAGCGGAATCTGCGCGTATTGTTGG
ACCTCGCGCTGTCGACTTTTTTTTTATCGAATACCAGACAGAGCGGTTTC
GGTCGGCGACAATCCAATCCTAATCCTTCCTTGTGCGCGCTCGTACGTCG
GTCTGTCCTGCCTTGTATTCTGGCAGCGCAATACGAGGATTGTCAAACTA
CTTGGTGCACGAATCGGGCAGGTGAGGAATCCAGCTCGACTACTATGTAC
AGCAGCAGTGGTGTTTTATTTCACGCGCTGACCTCCTCTTAATCCCGCAC
TGCTGTACCGTCTAACTACCTCGAAGACGTTCCTGCTCACCTACAATATT
TTCAGCTTTCCCATACCTTTCAAAATCACAGTTGGTTGCGACGCCAGCCA
GACCGACGAGATGTATGTGTAGCCTCACGTTTGTTGCTAGTTTTTTTTTT
GCGAAACCACCTTCTTCGCCTCCTGTTTCACTCGTGTTTCTTTTCGTCTT
GTACTTTTTCCACTGCCGCCTTCCTCTTCGCTTCTTTTGCGGAACCACCG
CAATACGCTCTGTCTGATTGGTTAGCAACGACCCGCAACTGAAAAAGCGA
ATGGAAGCAGTCAAGACCCACGCCTTGGCCGACCTCAAGCAACGACAACA
GGAACGGGACGGGAAGCGGTGACAGCCAGTCCGCTTGGTTGCCGCTCATG
TCCGATCCCACAAAAATTTACCTGTCGCGGACGAACCCTGTTGGGATCTA
GAGTAATTGATGGTCTGCGTGCGGGCTCCCATTTTTCGGTGCATGTTTTG
GTATTCTTGTGGGATGTAAATATGTCGATGGTGGACGACGGGAGTCCCGC
ATGGAGTGCAGGTAGTTCATCAAGTAGTGGATGTGCAGAGCATATTATGA
TGAGAACGTACCCATGAACGCGGTGTGCTGGGTACCAAGTACCAGGACGG
AACGAGAGGGAGATTAAGAACCAGCCTCAGCTCGTGCTATGCACACAAGA
TGTCGCATGGTTGAAAATGTCGGATGTTGCACTGCTTTTACCCGCGTTGC
GTGCCCGGTTTCAAGGCAAAAAAATGTTATCGCGTCCGCTGTTTGACAAA
GACAACGTCCATTGAACGATCGCTCCCCACGAGCATAGCTAGCA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10257:669..2112+

>mRNA_E-siliculosus-1a_F_contig10257.225.1 ID=mRNA_E-siliculosus-1a_F_contig10257.225.1|Name=mRNA_E-siliculosus-1a_F_contig10257.225.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=972bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10257:669..2112+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GAGCCCCAAGGGGCAGCAGCTCCGTCTTATCCTGAGAACCGAGTTCAAGA
AGAACATGGGCGAGACCGACCCAGTCAAGATAGAAGCGCTCAAGGGAGGG
AGCCCCAAGGGGCAGCAGCTCCGTCTTATCCTGAGAACCGAGTTCAAGAA
GAACATGGGCGAGACCGACCCAGTCAAGATAGAAGCGCTCAAGGGAGGCG
CAATACGAGGATTGTCAAACTACTTGGTGCACGAATCGGGCAGCGCAATA
CGAGGATTGTCAAACTACTTGGTGCACGAATCGGGCAGCAACGACCCGCA
ACTGAAAAAGCGAATGGAAGCAGTCAAGACCCACGCCTTGGCCGACCTCA
AGCAACGACAACAGGAACGGGACGGGAAGCGGTGACAGCCAGTCCGCTTG
GTTGCCGCTCATGTCCGATCCCACAAAAATTTACCTGTCGCGGACGAACC
CTGTTGGGATCTAGAGTAATTGATGGTCTGCGTGCGGGCTCCCATTTTTC
GGTGCATGTTTTGGTATTCTTGTGGGATGTAAATATGTCGATGGTGGACG
ACGGGAGTCCCGCATGGAGTGCAGGTAGTTCATCAAGTAGTGGATGTGCA
GAGCATATTATGATGAGAACGTACCCATGACAACGACCCGCAACTGAAAA
AGCGAATGGAAGCAGTCAAGACCCACGCCTTGGCCGACCTCAAGCAACGA
CAACAGGAACGGGACGGGAAGCGGTGACAGCCAGTCCGCTTGGTTGCCGC
TCATGTCCGATCCCACAAAAATTTACCTGTCGCGGACGAACCCTGTTGGG
ATCTAGAGTAATTGATGGTCTGCGTGCGGGCTCCCATTTTTCGGTGCATG
TTTTGGTATTCTTGTGGGATGTAAATATGTCGATGGTGGACGACGGGAGT
CCCGCATGGAGTGCAGGTAGTTCATCAAGTAGTGGATGTGCAGAGCATAT
TATGATGAGAACGTACCCATGA
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