mRNA_E-siliculosus-1a_F_contig10242.216.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10242.216.1
Unique NamemRNA_E-siliculosus-1a_F_contig10242.216.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10242.216.1 vs. uniprot
Match: A0A6H5LQ87_9PHAE (LETM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LQ87_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 1.830e-41
Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = 1
Query:   19 SRYAKETYDKIKSGVDFYWTGTKILGNDVGYALTLVSKAVQGSILNPREVRTLRRTAKDCVTFIPFVMILIFPLTP 246
            SRYAKETYDKIKSGVDFYWTGTKILGNDVGYALTLVSKAVQGSILNPREVRTLRRTAKDCVTFIPFV+ILIFPLTP
Sbjct:  647 SRYAKETYDKIKSGVDFYWTGTKILGNDVGYALTLVSKAVQGSILNPREVRTLRRTAKDCVTFIPFVVILIFPLTP 722          
BLAST of mRNA_E-siliculosus-1a_F_contig10242.216.1 vs. uniprot
Match: D8LP03_ECTSI (LETM1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP03_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 4.550e-40
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = 1
Query:   19 SRYAKETYDKIKSGVDFYWTGTKILGNDVGYALTLVSKAVQGSILNPREVRTLRRTAKDCVTFIPFVMILIFPLTP 246
            SRYAKETYDKIKSG+DFYWTGTKILGNDVGYALTLVSKAVQGSILNPREVRTLRRTAKDCVTFIPFV+ILI PL+P
Sbjct:  464 SRYAKETYDKIKSGLDFYWTGTKILGNDVGYALTLVSKAVQGSILNPREVRTLRRTAKDCVTFIPFVIILIIPLSP 539          
BLAST of mRNA_E-siliculosus-1a_F_contig10242.216.1 vs. uniprot
Match: A0A836CA55_9STRA (LETM1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA55_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 2.060e-23
Identity = 46/76 (60.53%), Postives = 60/76 (78.95%), Query Frame = 1
Query:   19 SRYAKETYDKIKSGVDFYWTGTKILGNDVGYALTLVSKAVQGSILNPREVRTLRRTAKDCVTFIPFVMILIFPLTP 246
            +RY +ET +K++S +DFY TGTK+LG D+ YAL LV KA+QG  L PREVRTLRR+ KD +T IP ++ILI PL+P
Sbjct:  156 ARYVRETVEKLRSALDFYVTGTKLLGQDIQYALALVGKAIQGYTLKPREVRTLRRSGKDLLTLIPTIIILILPLSP 231          
BLAST of mRNA_E-siliculosus-1a_F_contig10242.216.1 vs. uniprot
Match: A0A7S2SGM0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SGM0_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 2.690e-20
Identity = 41/69 (59.42%), Postives = 58/69 (84.06%), Query Frame = 1
Query:   40 YDKIKSGVDFYWTGTKILGNDVGYALTLVSKAVQGSILNPREVRTLRRTAKDCVTFIPFVMILIFPLTP 246
            + K+++G+ FY TGT++LG+D+ YA++L+ KAVQG+ L PRE RTLRRTAKD VT +PFV+IL+ PL+P
Sbjct:  242 WSKLQAGLSFYTTGTRLLGDDLNYAVSLLGKAVQGTTLAPREARTLRRTAKDLVTLVPFVIILLIPLSP 310          
BLAST of mRNA_E-siliculosus-1a_F_contig10242.216.1 vs. uniprot
Match: A0A7S2X822_9EUKA (Hypothetical protein n=2 Tax=Lotharella TaxID=74819 RepID=A0A7S2X822_9EUKA)

HSP 1 Score: 86.7 bits (213), Expect = 1.360e-19
Identity = 39/72 (54.17%), Postives = 53/72 (73.61%), Query Frame = 1
Query:   31 KETYDKIKSGVDFYWTGTKILGNDVGYALTLVSKAVQGSILNPREVRTLRRTAKDCVTFIPFVMILIFPLTP 246
            K+T  K+K  + FY  GTK+LGND+ YAL L+++A+ G  L PRE R L+RTAKD +T +PF +IL+ PLTP
Sbjct:   62 KDTVTKLKMALSFYVLGTKLLGNDIQYALWLIARAIDGDTLKPREARMLQRTAKDLLTLLPFTIILLIPLTP 133          
BLAST of mRNA_E-siliculosus-1a_F_contig10242.216.1 vs. uniprot
Match: A0A7S3KWU1_9STRA (Hypothetical protein n=2 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KWU1_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 5.730e-19
Identity = 44/75 (58.67%), Postives = 54/75 (72.00%), Query Frame = 1
Query:   22 RYAKETYDKIKSGVDFYWTGTKILGNDVGYALTLVSKAVQGSILNPREVRTLRRTAKDCVTFIPFVMILIFPLTP 246
            R+  E  D+ K G+ FY  G ++L NDV + L LVS+A QG  L PREVRT+RRT KD +TFIPFV+ILI PLTP
Sbjct:  485 RWLAELVDQTKKGLAFYVKGVRLLWNDVAFCLNLVSRAAQGYTLKPREVRTIRRTFKDILTFIPFVIILIIPLTP 559          
BLAST of mRNA_E-siliculosus-1a_F_contig10242.216.1 vs. uniprot
Match: A0A0D2M6A9_9CHLO (LETM1 domain-containing protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2M6A9_9CHLO)

HSP 1 Score: 85.5 bits (210), Expect = 1.710e-18
Identity = 44/73 (60.27%), Postives = 52/73 (71.23%), Query Frame = 1
Query:   28 AKETYDKIKSGVDFYWTGTKILGNDVGYALTLVSKAVQGSILNPREVRTLRRTAKDCVTFIPFVMILIFPLTP 246
            AKE  DK+  GV F   G ++LG+DVG A  L SKA  G IL PREV  LRRTA+D +TFIPF++ILI PLTP
Sbjct:   20 AKEGADKVGEGVGFLTRGVRLLGSDVGNAGRLFSKAALGGILKPREVTALRRTARDLLTFIPFIIILIIPLTP 92          
BLAST of mRNA_E-siliculosus-1a_F_contig10242.216.1 vs. uniprot
Match: A0A1Z5JMY9_FISSO (LETM1 domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JMY9_FISSO)

HSP 1 Score: 87.8 bits (216), Expect = 2.000e-18
Identity = 44/82 (53.66%), Postives = 56/82 (68.29%), Query Frame = 1
Query:    1 LCGRGESRYAKETYDKIKSGVDFYWTGTKILGNDVGYALTLVSKAVQGSILNPREVRTLRRTAKDCVTFIPFVMILIFPLTP 246
            L G    R++ +  DK K G+ FY  G ++  ND  Y L L+++AVQG  L PREVRTLRRT KD +TFIPFV+ILI PL+P
Sbjct:  501 LDGESIKRWSIDLLDKTKKGLAFYVKGVRLFWNDNVYCLRLINRAVQGYTLEPREVRTLRRTFKDIITFIPFVIILIIPLSP 582          
BLAST of mRNA_E-siliculosus-1a_F_contig10242.216.1 vs. uniprot
Match: A0A5J4Z2D7_PORPP (LETM1 and EF-hand domain-containing protein anon-60Da, mitochondrial n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z2D7_PORPP)

HSP 1 Score: 87.4 bits (215), Expect = 2.730e-18
Identity = 40/71 (56.34%), Postives = 54/71 (76.06%), Query Frame = 1
Query:   34 ETYDKIKSGVDFYWTGTKILGNDVGYALTLVSKAVQGSILNPREVRTLRRTAKDCVTFIPFVMILIFPLTP 246
            ET  K + GV+FYW G +++G D+ YA+ LV KA+ G+ L+PREVRTLRRT +D +T IPF +ILI PL+P
Sbjct:  539 ETVTKGREGVEFYWRGFRLIGGDLRYAVRLVRKAILGTTLSPREVRTLRRTGRDVLTLIPFTIILIIPLSP 609          
BLAST of mRNA_E-siliculosus-1a_F_contig10242.216.1 vs. uniprot
Match: A0A7S0B253_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0B253_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 2.590e-17
Identity = 40/75 (53.33%), Postives = 55/75 (73.33%), Query Frame = 1
Query:   22 RYAKETYDKIKSGVDFYWTGTKILGNDVGYALTLVSKAVQGSILNPREVRTLRRTAKDCVTFIPFVMILIFPLTP 246
            R+  +  +K K+G+ FY  G ++L ND  Y+L L+ +A+QG  L PREVRTLRR+ KD +TFIPFV+ILI PL+P
Sbjct:  127 RFLADLLEKTKTGLLFYVKGVELLWNDAIYSLRLIGRALQGYTLQPREVRTLRRSFKDIITFIPFVIILIIPLSP 201          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10242.216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LQ87_9PHAE1.830e-4198.68LETM1 domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LP03_ECTSI4.550e-4094.74LETM1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A836CA55_9STRA2.060e-2360.53LETM1 domain-containing protein n=1 Tax=Tribonema ... [more]
A0A7S2SGM0_9STRA2.690e-2059.42Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2X822_9EUKA1.360e-1954.17Hypothetical protein n=2 Tax=Lotharella TaxID=7481... [more]
A0A7S3KWU1_9STRA5.730e-1958.67Hypothetical protein n=2 Tax=Amphora coffeiformis ... [more]
A0A0D2M6A9_9CHLO1.710e-1860.27LETM1 domain-containing protein n=1 Tax=Monoraphid... [more]
A0A1Z5JMY9_FISSO2.000e-1853.66LETM1 domain-containing protein n=2 Tax=Fistulifer... [more]
A0A5J4Z2D7_PORPP2.730e-1856.34LETM1 and EF-hand domain-containing protein anon-6... [more]
A0A7S0B253_9STRA2.590e-1753.33Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10242contigE-siliculosus-1a_F_contig10242:1398..2295 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size246
Model size246
Exons2
Hectar predicted targeting categoryother localisation
Seed eggNOG ortholog2880.D8LP03
Seed ortholog evalue2.7e-33
Seed ortholog score147.5
Taxonomic scopeEukaryota
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.L
EggNOG OGsKOG1043@1,KOG1043@2759
EggNOG free text desc.calcium export from the mitochondrion
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927528.0609565-CDS-E-siliculosus-1a_F_contig10242:1397..15381622927528.0609565-CDS-E-siliculosus-1a_F_contig10242:1397..1538Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10242 1398..1538 +
1696318569.1250243-CDS-E-siliculosus-1a_F_contig10242:1397..15381696318569.1250243-CDS-E-siliculosus-1a_F_contig10242:1397..1538Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10242 1398..1538 +
1622927528.079809-CDS-E-siliculosus-1a_F_contig10242:2190..22951622927528.079809-CDS-E-siliculosus-1a_F_contig10242:2190..2295Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10242 2191..2295 +
1696318569.1376507-CDS-E-siliculosus-1a_F_contig10242:2190..22951696318569.1376507-CDS-E-siliculosus-1a_F_contig10242:2190..2295Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10242 2191..2295 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10242.216.1prot_E-siliculosus-1a_F_contig10242.216.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10242 1398..2295 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10242.216.1

>prot_E-siliculosus-1a_F_contig10242.216.1 ID=prot_E-siliculosus-1a_F_contig10242.216.1|Name=mRNA_E-siliculosus-1a_F_contig10242.216.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=82bp
LCGRGESRYAKETYDKIKSGVDFYWTGTKILGNDVGYALTLVSKAVQGSI
LNPREVRTLRRTAKDCVTFIPFVMILIFPLTP
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mRNA from alignment at E-siliculosus-1a_F_contig10242:1398..2295+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10242.216.1 ID=mRNA_E-siliculosus-1a_F_contig10242.216.1|Name=mRNA_E-siliculosus-1a_F_contig10242.216.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=898bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10242:1398..2295+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTGTGTGGGCGTGGGGAGAGCAGATACGCGAAAGAGACGTACGACAAGAT CAAGAGCGGGGTGGACTTCTACTGGACCGGTACCAAGATCCTCGGTAACG ACGTCGGGTACGCCCTCACGCTCGTCTCCAAGGCCGTGCAGGTACATAGC GGTGTCGATAGCGGTAGCAGTAGCGGTCGGGGCTCGCGTACGGTGGAAGG AAGGTACACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGTAGATGGTT GCTGTGTCGGTAGCGGTCCGTGTACGGTGGAAGGAGGCGCCTATCGCATC CGATCAAGTCTAAGGTGTAACGTGTACGATGCCGGCGAGGTGGCTTGGAA CAGATTATCCGGTCGATGATGCATGCACCTGCTGCTGCGTCGCTGGATGT ACTGTTTATCGAAAACTCCTCGTCTAGCAAATTACAGCCTCAGCGGCATT TGTACATGGTCGCCCGCAGTGTTGTGCGTAGACGAGGCAACACGTTGGGC CAGTACCTCGTGGGTTGTCGACTTTCGTTTCAAAGGCCGTAGGAGGTTAT TCTTTGTACGGTTCCTTTTGAGCCGCGGACAACATGGAAACCGGAACCTT TTTTTTTTTTTTTTCATGCTGGCAGGCCGGAAGCGCGTTAGCGTCGTGAG CACCCTGTGGTGGTCCTCCCGTTACGGAAACCCCTGGCGTTTCCACGCCT ACTTCTCCCCCGGTCTCACTCACTGTCTCACTTTCATTTGTGTGTTTTTA CACCCTGGCTGGCGGTTTCTTCCTTGTGTCCCTGTGGCAACAGGGATCCA TCCTGAATCCCCGCGAGGTTCGAACGCTACGCCGGACTGCCAAGGATTGC GTCACGTTCATCCCGTTCGTCATGATCCTCATCTTCCCTCTTACGCCC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10242:1398..2295+

>mRNA_E-siliculosus-1a_F_contig10242.216.1 ID=mRNA_E-siliculosus-1a_F_contig10242.216.1|Name=mRNA_E-siliculosus-1a_F_contig10242.216.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=492bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10242:1398..2295+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTGTGTGGGCGTGGGGAGAGCAGATACGCGAAAGAGACGTACGACAAGAT
CAAGAGCGGGGTGGACTTCTACTGGACCGGTACCAAGATCCTCGGTAACG
ACGTCGGGTACGCCCTCACGCTCGTCTCCAAGGCCGTGCAGTTGTGTGGG
CGTGGGGAGAGCAGATACGCGAAAGAGACGTACGACAAGATCAAGAGCGG
GGTGGACTTCTACTGGACCGGTACCAAGATCCTCGGTAACGACGTCGGGT
ACGCCCTCACGCTCGTCTCCAAGGCCGTGCAGGGATCCATCCTGAATCCC
CGCGAGGTTCGAACGCTACGCCGGACTGCCAAGGATTGCGTCACGTTCAT
CCCGTTCGTCATGATCCTCATCTTCCCTCTTACGCCCGGATCCATCCTGA
ATCCCCGCGAGGTTCGAACGCTACGCCGGACTGCCAAGGATTGCGTCACG
TTCATCCCGTTCGTCATGATCCTCATCTTCCCTCTTACGCCC
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