mRNA_E-siliculosus-1a_F_contig1024.213.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E-siliculosus-1a_F_contig1024.213.1
Unique Name	mRNA_E-siliculosus-1a_F_contig1024.213.1
Type	mRNA
Organism	Ectocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)

Homology

[Close]

BLAST of mRNA_E-siliculosus-1a_F_contig1024.213.1 vs. uniprot
Match: A0A6H5JHV3_9PHAE (GT1 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JHV3_9PHAE)

HSP 1 Score: 873 bits (2255), Expect = 0.000e+0
Identity = 438/459 (95.42%), Postives = 446/459 (97.17%), Query Frame = 3

Query:  105 AGHEVTFVTSQPMVARIQGMCRDPRVAVLGLQDELVPESDHFLLGMQPHVKKHPVWYAEEKMTPSLVALIKGMPRPPDMMISDHLTWAGANAARIVGVKHACHVAWPLFMLEQCGFLPARSLSGVLGAAARALRSSRLAPGFLKPPGPPRAMLDRVRQQCLGVEEGSAGLVLVNSFGIEPPRALPPCLKVIGRGHLPETVEALEEHPELKTFLDSNDAVVYVTFGSRVTPPPSLVRTVAEGLVTGGWAVVWSLKEADASHLPPAALASGRFFVRPWLPQGAALAHPHVKVAVTHCGMGGLYECAVNAVPIVPLPFSLSADQPVNAAIAEAAGFAVRPRPLSRKATDLLKFWKRRGDPEYAPAAIHDAVLKILRDPSLAEGARRAKRAALAAGYGRVAVDAVESTCLYGTDNLSAGNGGIRNAAGATQTLRGIVGGVVVGAVLSGLLAVKLSHGGCRRTR 1481
            A  +VTFVTSQPMVARIQGMCRDPRVAVLGLQDELVPESDHFLLGMQPHVKKHPVWYAEEKMTPSLVAL+KGMPR PDM+ISDHLTWAGANAARIVGVKHACHVAWPLFMLEQCGFLPARSLS VLGAAARALRSSRLAP FLKPPGPPRAMLDRVRQQCLGVEEGSAGLVLVNSFGIEPPRALPPCLKVIGRGHLPETVEALEEHPELKTFLDSNDAVVYVTFGSRVTPPPSLVRTVAEGLVTGGWAVVWSLKEADASHLPPAALASGRFFVRPWLPQGAALAHPHVKVAVTHCGMGGLYECAVNAVPIVPLPFSLSADQPVNAAIAEAAGFAVRPRPLSR+ATD LKFW+RRGDPEYAPAAI+DAVLKILRDPSLAEGA RAKRAALAAGYGRVAVDAVESTCL+G DNL A NGGI NAAGATQTLRGIVGGVV GAVLSGLLAV+LSHGG RRTR
Sbjct:   17 ASTQVTFVTSQPMVARIQGMCRDPRVAVLGLQDELVPESDHFLLGMQPHVKKHPVWYAEEKMTPSLVALVKGMPRAPDMIISDHLTWAGANAARIVGVKHACHVAWPLFMLEQCGFLPARSLSSVLGAAARALRSSRLAPAFLKPPGPPRAMLDRVRQQCLGVEEGSAGLVLVNSFGIEPPRALPPCLKVIGRGHLPETVEALEEHPELKTFLDSNDAVVYVTFGSRVTPPPSLVRTVAEGLVTGGWAVVWSLKEADASHLPPAALASGRFFVRPWLPQGAALAHPHVKVAVTHCGMGGLYECAVNAVPIVPLPFSLSADQPVNAAIAEAAGFAVRPRPLSRRATDFLKFWQRRGDPEYAPAAIYDAVLKILRDPSLAEGAGRAKRAALAAGYGRVAVDAVESTCLFGADNLPAENGGIGNAAGATQTLRGIVGGVVFGAVLSGLLAVRLSHGGSRRTR 475

[Close]

BLAST of mRNA_E-siliculosus-1a_F_contig1024.213.1 vs. uniprot
Match: A0A443NA18_9MAGN (Glycosyltransferase n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A443NA18_9MAGN)

HSP 1 Score: 89.4 bits (220), Expect = 2.910e-15
Identity = 68/194 (35.05%), Postives = 95/194 (48.97%), Query Frame = 3

Query:  585 LGVEEGSAGLVLVNSF-GIEPPRALPP-------CLKVIGRGHL----PETVEALEEHP---ELKTFLDSNDAVVYVTFGSRVTPPPSLVRTVAEGLVTGGWAVVWSLKEADASHLPPAAL--ASGRFFVRPWLPQGAALAHPHVKVAVTHCGMGGLYECAVNAVPIVPLPFSLSADQPVNAA-IAEAAGFAVR 1112
            +G E   A  V++N+  G++P   L         CL V     L    P++   L+ H     L +F DS  +V YV+FG+ ++PPPS +  +AEGL   G   +WSL++     LP   L    GR  V PW PQ   L H  V   VTHCG   L E AV  VP++  PF    DQ +N   +++  G A+R
Sbjct:  209 MGQESPRAAAVVINTVEGLDPTTVLDDLRASFQKCLPVGPVSLLNKARPDSEPELDPHSCISWLDSFSDSPASVAYVSFGTVMSPPPSELAELAEGLEASGAHFLWSLRDKHRESLPAGFLDRTKGRGHVVPWAPQTRVLGHVVVGAFVTHCGWNSLIESAVAGVPMICRPFF--GDQRINGRMLSDVLGVAIR 400

[Close]

BLAST of mRNA_E-siliculosus-1a_F_contig1024.213.1 vs. uniprot
Match: E1ZHB4_CHLVA (Glycosyltransferase n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZHB4_CHLVA)

HSP 1 Score: 88.6 bits (218), Expect = 5.780e-15
Identity = 106/397 (26.70%), Postives = 160/397 (40.30%), Query Frame = 3

Query:   45 CVPCYGHAKPLVLLAEHLAEAGHEVTFVTSQPMVARIQGM--------CRDPRVAVLGLQDELVPESDHFLLGMQPHVKKHPVWYA--EEKMTPSLVALIKGMPRPPDMMISDHLTWAGANAARIVGVKHACHVAWPL-FMLEQCGF--------LPARSLSGVLGAAARALRSSRLAPGFLKPPGPPRAMLDRVRQQCLGVEEGSAGLVLVNSFGIEPPRALPPCLKVIGRGHLPETVEAL-----------------------EEHPELKTFL----DSNDAVVYVTFGSRVTPPPSLVRTVAEGLVTG-GWAVVWSLKEADASHLPP-----AALASGRFFVRPWLPQGAALAHPHVKVAVTHCGMGGLYECAVNAVPIVPLPFSLSADQPVNA 1079
            C+P  GH +P+  +A  +   G +V F   +P  A ++ M          + + + +G   E V ++    + +   V K    +A  EE + P L A +         ++SD  T A  +AA + G+        PL + L   G         +P      VL  A   L+ +   P  LK  G  +      R +    E      +  +S   +PP  +P  + ++G     ET   L                       ++  E+  FL    D+ + VVYV  GS VTP  +LV  +A       G   +W+L++A  + LPP     A    G+  V  W  Q A LAHP VK+ VTH G+G L E      P+V LPF   ADQ VNA
Sbjct:    8 CLPLEGHLRPVTNVAAAVQRLGVDVEFAALEPSRATVESMGVPFVSLGSAERKTSKMGFA-ERVGDTSTPPVPLDQFVDKAGANFAGWEEAVYPLLQAHMDRAGGRYAAIVSDQATMAAHDAAAVAGLPLVSLYQLPLSYSLVMGGHNEYNMPRSVPVELPCCVLPEAMTWLQYAFTNPA-LKRRGAAQITAAYGRHRAAARERLGLPPLPPSSGPFQPPPGIPRSITIVGGMMELETERPLPPGWHMSGPQVLPPVTAPPVLDGDKDAEVAAFLRAAQDAGEPVVYVALGSLVTPHEALVHAMAAAFQAAPGARFLWALRQASHAFLPPDLAPPAGAGGGKVLVVSWAAQTAVLAHPAVKLFVTHGGLGSLSEGLAAGKPLVALPFF--ADQHVNA 400

[Close]

BLAST of mRNA_E-siliculosus-1a_F_contig1024.213.1 vs. uniprot
Match: A0A1W0X030_HYPDU (UDP-glucuronosyltransferase n=1 Tax=Hypsibius dujardini TaxID=232323 RepID=A0A1W0X030_HYPDU)

HSP 1 Score: 83.2 bits (204), Expect = 2.550e-13
Identity = 49/131 (37.40%), Postives = 70/131 (53.44%), Query Frame = 3

Query:  714 EEHPELKTFLDSNDA--VVYVTFGSRVTPPPSLVRTVAEGLVTGGWAVVWSLKEADASHLPPAALAS-------GRFFVRPWLPQGAALAHPHVKVAVTHCGMGGLYECAVNAVPIVPLPFSLSADQPVNA 1079
            EE  +++ +LD+ D+  V+Y++FGS   P P  +  + E L+     VVWSLK+    +LP    +        G F + PW PQ A LAHP VKV ++HCG     E     VP+V  P  + ADQ +NA
Sbjct:  238 EEKDDVQKWLDTQDSRSVIYISFGSIAVPKPDEIMAIGEALLQLTSPVVWSLKKEYYVYLPVDIQSELNKEGCKGNFVIVPWAPQKAVLAHPAVKVFISHCGWNSTLEALSYGVPVVCWP--MFADQLLNA 366

[Close]

BLAST of mRNA_E-siliculosus-1a_F_contig1024.213.1 vs. uniprot
Match: A0A182N956_9DIPT (UDP-glucuronosyltransferase n=1 Tax=Anopheles dirus TaxID=7168 RepID=A0A182N956_9DIPT)

HSP 1 Score: 82.4 bits (202), Expect = 6.360e-13
Identity = 66/193 (34.20%), Postives = 96/193 (49.74%), Query Frame = 3

Query:  540 PGPPRAMLDRVRQQCLGVEEGSAGLVLVNS-FGIEPPRALPPCLKVIGRGHLPETVEALEEHPELKTFLDSND-AVVYVTFGSRVTPP---PSLVRTVAEGLVTGGWAVVWSLKEADASHLPPAALASGRFFVRPWLPQGAALAHPHVKVAVTHCGMGGLYECAVNAVPIVPLPFSLSADQPVNAAIAEAAGF 1103
            PG  R+M +  R+           LVL+NS F +  PR   P +  +G  H+   V  L E  ++KTF++S+D  V+Y + G  V P    P    T+ + L      ++W     D   LP   +   +F VR WLPQ   LAHP V++ +TH G+    E   + VPIV +P  +  DQ +NAA AE AG+
Sbjct:  223 PGATRSMEEMRRR--------GVALVLINSHFSMSYPRPYTPNMVEVGGFHVNREVNPLPE--DIKTFIESSDHGVIYFSLGGNVKPSKMDPRKRDTLVKVLSDMRERIIWKW---DDETLP---VDKHKFLVRRWLPQDDILAHPRVRLFITHGGLLSCTEAIYHGVPIVAIP--IFGDQSLNAARAEQAGW 397

[Close]

BLAST of mRNA_E-siliculosus-1a_F_contig1024.213.1 vs. uniprot
Match: A0A6P8I1Z0_ACTTE (UDP-glucuronosyltransferase 1-2-like isoform X1 n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8I1Z0_ACTTE)

HSP 1 Score: 81.6 bits (200), Expect = 1.110e-12
Identity = 65/217 (29.95%), Postives = 100/217 (46.08%), Query Frame = 3

Query:  615 VLVNSFGIEPPRALPPCLKVIGRGHLPETVEALEEHPELKTFLDSN--DAVVYVTFGSRVTP--PPSLVRTVAEGLVTGGWAVVWSLKEADASHLPPAALASGRFFVRPWLPQGAALAHPHVKVAVTHCGMGGLYECAVNAVPIVPLPFSLSADQPVNAAIAEAAGFAVRPRPLSRKATDLLKFWKRRGDPEYAPAAIHDAVLKILRDPSLAEGARR 1253
            + +  F ++ P  +PP  K+IG  ++ + V+ L   P+L+  +DS+  D  + V+FGS V        V  +A+        VVW L+    S L P   A        WLPQ   LAHP ++V V+H G   LYE A   VP+V LP  L  DQP NA + E  G  +     +  A D+                 ++ + ++++ PS  E A+R
Sbjct:  248 LFLGDFAVDYPHPIPPSYKLIGPLNI-QPVKPLP--PDLQQLIDSSGDDGFIIVSFGSNVASVLDKDKVDIMADAFGRLKQKVVWRLQGYIPSSLSPNIKAVD------WLPQNDLLAHPKIRVFVSHVGQNSLYETAYRGVPVVSLP--LFGDQPDNALLVEERGMGLSLDYQTLTADDM-----------------YNTIQRVIQQPSFKENAQR 436

[Close]

BLAST of mRNA_E-siliculosus-1a_F_contig1024.213.1 vs. uniprot
Match: A0A137P216_CONC2 (Glycosyltransferase family 1 protein (Fragment) n=1 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137P216_CONC2)

HSP 1 Score: 77.0 bits (188), Expect = 1.180e-12
Identity = 60/187 (32.09%), Postives = 87/187 (46.52%), Query Frame = 3

Query:  618 LVNSF-GIEPPRALPPCLKVIG---RGHLPETVEALEEHPELKTFLDSNDAVVYVTFGSRVTPPPSLV--------RTVAEGLVTGGWAVVWSLKEADASHLPP-----------AALASG---RFFVRPWLPQGAALAHPHVKVAVTHCGMGGLYECAVNAVPIVPLPFSLSADQPVNAAIAEAAG 1100
            + NS+ G+E  R+LP  +  IG    G  P         PEL+TF+D+++ V+YV FGS V P   L+        R + +G++ G   VVW L   D    P            A +  G   +  +  W PQ + L HP  K+ ++H G+  +YE A   VPI+ LPF    DQP N  +    G
Sbjct:    1 IANSYIGLENARSLPTHIHPIGPILSGDTPPL------SPELQTFMDTHNKVLYVAFGSLVKPSQDLLTKLLRHFQRAINQGILDG---VVWGLPNTDFKTFPKTFKVDIAEYTTAQIVEGTQDKIKILKWAPQQSILHHPSTKLFLSHGGLDSIYESANAGVPILVLPFL--GDQPRNGVLVSENG 176

[Close]

BLAST of mRNA_E-siliculosus-1a_F_contig1024.213.1 vs. uniprot
Match: UPI00053C42D3 (UDP-glycosyltransferase 78D2-like n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C42D3)

HSP 1 Score: 80.9 bits (198), Expect = 1.530e-12
Identity = 49/138 (35.51%), Postives = 68/138 (49.28%), Query Frame = 3

Query:  693 PETVEALEEHPELKTFLDSN--DAVVYVTFGSRVTPPPSLVRTVAEGLVTGGWAVVWSLKEADASHLPPAALASGRF--FVRPWLPQGAALAHPHVKVAVTHCGMGGLYECAVNAVPIVPLPFSLSADQPVNAAIAEA 1094
            P  V  L +      +LD+    +V Y++FG+ +TPPPS ++ +AEGL       +WSLK+ D +HLP       R    V PW PQ   L H    V VTHCG   + E     +P++  PF    DQ +N    EA
Sbjct:  252 PPKVSTLNDTYNCLAWLDNQALGSVAYISFGTVMTPPPSELQAMAEGLEASRVPFIWSLKDKDRAHLPKGFQDRTREQGLVVPWAPQVKVLEHRATGVFVTHCGWNSVLESVAGGIPMICRPFF--GDQRLNGRAVEA 387

[Close]

BLAST of mRNA_E-siliculosus-1a_F_contig1024.213.1 vs. uniprot
Match: A0A061SK64_9CHLO (Glucuronosyltransferase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SK64_9CHLO)

HSP 1 Score: 81.3 bits (199), Expect = 1.550e-12
Identity = 72/239 (30.13%), Postives = 106/239 (44.35%), Query Frame = 3

Query:  612 LVLVNSF-GIEPPRALPPCLKVIGRGHLPETVEALEEHP-ELKTFLDSNDA---VVYVTFGSRVTPPPSLVRTVAEGLVTGGWAVVWSLKEADASHLPPAALASGRFFVRPWLPQGAALAHPHVKVAVTHCGMGGLYECAVNAVPIVPLPFSLSADQPVNAAIAEAAGFAVRPRPLSRKATDLLKFWKRRGDPEYAPAAIHDAVLKILRDPSLAEGARRAKRAALAAGYGRVAVDAVES 1313
            L L NS  G++ P+  PP L+  G       ++  EE P E+ +FL+S  A   VVY+++G+ V     +V  + + L      V+W+L +     LP          V  W+P   ALAHP V+V V+HCG+  + E     VPIV  P  L    P+ + +A        P+P S         W R+ D           +L +L +PS  + A   KR     G  R A D VE+
Sbjct:  261 LWLFNSVPGLDYPQPFPPLLQYTG---CLSDIDKAEEFPAEVLSFLESVPADKPVVYISYGTFVALSRDVVHHIVDTLAXENLYVLWALPKPQQVGLPXQ--LPSNVXVHNWIPTTRALAHPKVRVFVSHCGVNSVLESLAQGVPIVGYP-QLGDQLPLCSRVAYLGAGITAPKPQS---------WLRKED-----------ILNVLENPSYTQHAEAFKRLFKLFGGVRRAADLVEA 473

[Close]

BLAST of mRNA_E-siliculosus-1a_F_contig1024.213.1 vs. uniprot
Match: A0A345HZ32_9ACTN (Glycosyltransferase n=2 Tax=Streptomyces paludis TaxID=2282738 RepID=A0A345HZ32_9ACTN)

HSP 1 Score: 80.9 bits (198), Expect = 1.640e-12
Identity = 90/300 (30.00%), Postives = 130/300 (43.33%), Query Frame = 3

Query:  333 PDMMISDHLTWAGANAARIVGVKHACHV-AWPLFML-------EQCGFLPAR-SLSGVLGAAARALRSSRLAPGFLKPPGPPRAMLDRVRQQCLGVEEGS---------AGLVLVNS-FGIEPPRALPPCLKVIGRGHLPETVEALEEHPELKTFLDSNDAVVYVTFGSRVTPPPSLVRTVAEGLVTGGWA--VVWSLKEADASHLPPAALASGRFFVRPWLP-QGAALAHPHVKVAVTHCGMGGLYECAVNAVPIVPLPFSLSADQPVNAAIAEAAGFAV-RPRP-----LSRKATDLL 1148
            P +M+ D +T A  +AA   G+  A  + A P F             +LP R +    L  A   +RSS       + P     +   V+++ LG++  S         A LVL +S FG+E    +PP   ++G   LPE      E P+L  +LD   +VVY+ FG+        +R +   +   G A   +W L +     LPP     G   V  W+P Q + LAHPHV+V VTH G  G +E      P++ LP  L      + A+    G AV RP       L+ K T LL
Sbjct:  131 PALMVVDTMTLAPLDAAMTRGIPFAVTLPAMPSFGFTLPWLYPSPIAYLPRRMNARQHLSNAVFKMRSSLTL--LTRTP----TVAFAVKRRILGIKNASGSHDAYYRAAQLVLTSSVFGLEYAFPVPPHTHLVG-AFLPENPPDRIEDPDLLEWLDRAASVVYLGFGTLSRLSRDQIRALLTAVQRLGPAHQFLWKLSKEQQDLLPPPESRPGNLRVESWIPSQLSVLAHPHVRVFVTHGGSNGFHESVHYGKPVLVLPAWLDCYAIAHRAVDSGVGLAVGRPAEVTGDELTAKLTRLL 423

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_F_contig1024.213.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_F_contig1024.213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JHV3_9PHAE	0.000e+0	95.42	GT1 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0...	[more]
A0A443NA18_9MAGN	2.910e-15	35.05	Glycosyltransferase n=1 Tax=Cinnamomum micranthum ...	[more]
E1ZHB4_CHLVA	5.780e-15	26.70	Glycosyltransferase n=1 Tax=Chlorella variabilis T...	[more]
A0A1W0X030_HYPDU	2.550e-13	37.40	UDP-glucuronosyltransferase n=1 Tax=Hypsibius duja...	[more]
A0A182N956_9DIPT	6.360e-13	34.20	UDP-glucuronosyltransferase n=1 Tax=Anopheles diru...	[more]
A0A6P8I1Z0_ACTTE	1.110e-12	29.95	UDP-glucuronosyltransferase 1-2-like isoform X1 n=...	[more]
A0A137P216_CONC2	1.180e-12	32.09	Glycosyltransferase family 1 protein (Fragment) n=...	[more]
UPI00053C42D3	1.530e-12	35.51	UDP-glycosyltransferase 78D2-like n=1 Tax=Tarenaya...	[more]
A0A061SK64_9CHLO	1.550e-12	30.13	Glucuronosyltransferase n=1 Tax=Tetraselmis sp. GS...	[more]
A0A345HZ32_9ACTN	1.640e-12	30.00	Glycosyltransferase n=2 Tax=Streptomyces paludis T...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_F_contig1024	contig	E-siliculosus-1a_F_contig1024:5749..10947 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female	2021-02-24

Properties


Property Name	Value
Start	1
Stop	1
Cds size	1473
Model size	1689
Exons	8
Ec32 ortholog	Ec-14_000870.1
Ec32 ortholog description	UDP-glucosyltransferase, family GT1
Hectar predicted targeting category	signal peptide
BRITE	ko00000,ko00001,ko00002,ko01000,ko01003
Best eggNOG OG	NA\|NA\|NA
Best tax level	Eukaryota
CAZy	GT1
COG Functional cat.	G
EC	2.4.1.17
EggNOG OGs	KOG1192@1,KOG1192@2759
EggNOG free text desc.	transferase activity, transferring hexosyl groups
KEGG Module	M00014,M00129
KEGG Pathway	ko00040,ko00053,ko00140,ko00830,ko00860,ko00980,ko00982,ko00983,ko01100,ko01110,ko05204,map00040,map00053,map00140,map00830,map00860,map00980,map00982,map00983,map01100,map01110,map05204
KEGG Reaction	R01383,R02358,R02389,R02478,R02502,R02902,R03091,R04352,R04353,R04354,R04683,R07106,R08259,R08261,R08262,R08263,R08615,R09426,R09427,R09428
KEGG ko	ko:K00699
KEGG rclass	RC00005,RC00033,RC00049,RC00059,RC00078,RC00171,RC00397,RC00523,RC00529,RC00708,RC02748
Seed eggNOG ortholog	2880.D7FVF1
Seed ortholog evalue	4.4e-280
Seed ortholog score	969.9
Taxonomic scope	Eukaryota

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_F_contig1024.213.1	prot_E-siliculosus-1a_F_contig1024.213.1	Ectocarpus siliculosus Ec863f_EcPH12_90f female	polypeptide	E-siliculosus-1a_F_contig1024 5760..10742 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927527.2604537-UTR-E-siliculosus-1a_F_contig1024:5748..5759	1622927527.2604537-UTR-E-siliculosus-1a_F_contig1024:5748..5759	Ectocarpus siliculosus Ec863f_EcPH12_90f female	UTR	E-siliculosus-1a_F_contig1024 5749..5759 +
1696318568.551226-UTR-E-siliculosus-1a_F_contig1024:5748..5759	1696318568.551226-UTR-E-siliculosus-1a_F_contig1024:5748..5759	Ectocarpus siliculosus Ec863f_EcPH12_90f female	UTR	E-siliculosus-1a_F_contig1024 5749..5759 +
1622927527.3952143-UTR-E-siliculosus-1a_F_contig1024:10742..10947	1622927527.3952143-UTR-E-siliculosus-1a_F_contig1024:10742..10947	Ectocarpus siliculosus Ec863f_EcPH12_90f female	UTR	E-siliculosus-1a_F_contig1024 10743..10947 +
1696318568.6495419-UTR-E-siliculosus-1a_F_contig1024:10742..10947	1696318568.6495419-UTR-E-siliculosus-1a_F_contig1024:10742..10947	Ectocarpus siliculosus Ec863f_EcPH12_90f female	UTR	E-siliculosus-1a_F_contig1024 10743..10947 +

The following CDS feature(s) are a part of this mRNA:

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-siliculosus-1a_F_contig1024:5749..10947+
coding sequence from alignment at E-siliculosus-1a_F_contig1024:5749..10947+

protein sequence of mRNA_E-siliculosus-1a_F_contig1024.213.1

>prot_E-siliculosus-1a_F_contig1024.213.1 ID=prot_E-siliculosus-1a_F_contig1024.213.1|Name=mRNA_E-siliculosus-1a_F_contig1024.213.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=491bp
MACPPLSLVLCCVPCYGHAKPLVLLAEHLAEAGHEVTFVTSQPMVARIQG
MCRDPRVAVLGLQDELVPESDHFLLGMQPHVKKHPVWYAEEKMTPSLVAL
IKGMPRPPDMMISDHLTWAGANAARIVGVKHACHVAWPLFMLEQCGFLPA
RSLSGVLGAAARALRSSRLAPGFLKPPGPPRAMLDRVRQQCLGVEEGSAG
LVLVNSFGIEPPRALPPCLKVIGRGHLPETVEALEEHPELKTFLDSNDAV
VYVTFGSRVTPPPSLVRTVAEGLVTGGWAVVWSLKEADASHLPPAALASG
RFFVRPWLPQGAALAHPHVKVAVTHCGMGGLYECAVNAVPIVPLPFSLSA
DQPVNAAIAEAAGFAVRPRPLSRKATDLLKFWKRRGDPEYAPAAIHDAVL
KILRDPSLAEGARRAKRAALAAGYGRVAVDAVESTCLYGTDNLSAGNGGI
RNAAGATQTLRGIVGGVVVGAVLSGLLAVKLSHGGCRRTR*

mRNA from alignment at E-siliculosus-1a_F_contig1024:5749..10947+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-siliculosus-1a_F_contig1024.213.1 ID=mRNA_E-siliculosus-1a_F_contig1024.213.1|Name=mRNA_E-siliculosus-1a_F_contig1024.213.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5199bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1024:5749..10947+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CACACATCGTCATGGCGTGTCCTCCACTGAGCCTCGTGCTCTGCTGCGTA
CCTTGCTATGGCCATGCAAAGCCGCTGGTTCTCCTGGCGGAACATCTGGC
AGAGGCTGGTCACGAGGTATGTAGCGCCACGGCTGCTGAGTACCGCTCTC
CGCGCATGATCCGCTGCACCCAACCGTGATTTGTTCCGCGTCGCGATGTG
TTTGAAATTGATTTGTTCTTGCGTCTCATGGGTCGAACCTGGGAGACGGG
GTGGATGCAAGCTCCTGCTGCGTGTGCCTTCTGTTGCCATGGAAACCTGA
GGGTGGCGAAGACGTGTCATCTCCAGCTTGAAGTCGTTGCGTGCAAGGTG
GACGTGATGTACAACAATGCACACATCCCACTTCTGTTTTTCGATGTCAA
TGCGTGATCGTCGACACTAACTATGCATACAGCGCTTTCCCGTGTTCATG
TCACGTGTACACGTAGCTTTGCATGTTACGTAATCCACATCCAAGCTTTC
TACGTCCCGCTACCCAGCTGCGTGACATCGTGCACCTATACCCCAAGTAT
TGTGACGTCCCAGGAATAAAATCTGTGCTGCGGATTACGCTCTTCGTCAC
TTGCCGACAACAGCAATAAATCGTGAACTGAACATTAGAGTAATAAACTA
AGAGTTCGAGGATGGACACATGGACACACAGAAATCCAACAATGCCGCCC
CGTCCCGTCCGTCCCCGGTTGATCGTAAATCGTTTTGTTGCACCAACACA
GGTCACCTTCGTCACATCGCAGCCCATGGTAGCTCGCATACAAGGGATGT
GCAGGGACCCTCGCGTGGCGGTATTGGGACTGCAAGACGAGCTTGTACCC
GAGAGCGATCACTTCCTACTAGGAATGGTAAGACGAGAGCTTGAGAGTGG
TCGCCGGCCTGTCAAACCACAAGAGCCAGTGAGATGGCACCTGTAGTATC
TACTTTGAATGTCCACGCTTCGTCGCTGCGCGTGTGTTCGATTTGTCGCG
TGGCGTTTCTGCGTCCGAAGGGGTTGTCGGGATCGAAAGGAAATGGCTAG
GTGAAGTTTTTTTTCGTCCTCATTCGTCGCTTCTCCTCCAACCGTCTTGA
CTGTCAACGGACTCGGGCAACAGGGTTCGGCAGCCTCTGTGAAGGTGTAC
AGTGTTGGAGTATTTGTGTACAAGAACGACTGGTTCTACTGCACGGGTTC
TGTGCAGTATTGTGAAGGCGTGTTTCCAAGTCTGTAACCGTCACGTGAAG
ACAGCTTGGGCGTCTGAGTGCGGATAATAAATCACTCTGTGTTTACCCTA
CCTACACCTCGCATGAACAACGCCACCAGCTCGAGAGGACAGCGTCCCTC
GCTGCACAGCGTAAGCCACTTCGCCCAACAGGTTATGAGCCAACGTGGTA
GGTAAACCACATCGAGTCACAATGTCCTCCGCCAACCCTATCCTGAAGGG
ATACGCGCCGTTCAGCGGAAAGCCGGCGCACTACAGCAGTTGGATGTCTC
TCCAGCGAGCCCTCATGTTCGAAGCAGGCCTGGGAGAGATCATGACAGTA
TTGCTATTATTTATTTGGGTCGTATGCATACGGCATGATGGTTCGTGCAA
ATAGGTCACCTCGCCAGTGCCAGCTTATGCATATGTAGACTGCACACCCA
CTGGTATACCCGACCTCTCTTCCTACATCCCTCCCTGCTGCTGTGCTCTA
TCCCCCTTGATACCACCTGATGGACACGGCAGCAACCGCACGTGAAGAAA
CACCCGGTTTGGTACGCGGAGGAGAAAATGACCCCTTCCTTGGTGGCGTT
GATCAAGGGCATGCCTCGCCCTCCGGACATGATGGTACGTACGATACGCA
GGGCGAGGCTCCAACCCCTTCCCCCCGTAGACCAAAATATTGGCGAGAGA
CAGAGATGCCACTTCTTGTTTGTCCTGCTTCGGTCTTGCTAGGATAGCGC
ATGGTGCTCTTTGGATTTAACTGCTGGTAGCAAATGCTCCGAAGAATCCA
ACGTACTCTTCGTGCAATATTTTCGTTGTTATTGTAAGACTTTGCCTGCC
AACAGTATTCCCGGCAACCGATATTTAGTTTTAGTCATGGCATGATTTCA
AAAGTGGCACGTGTGCCGATCGTCGATCGGCAGAACCACGTCGTTGGATT
GTAACGTTTATTACGGGGATGCTTCTGTTTGTGTGTGTGGTGCGTTGGGG
GTGGCGGGAGGCATGCACTGAGAGCAAACCACATATCTTCACACTTCCAA
CTCAACCCAAAAATAGTCGGCAGCTGCACGTGTAGCTTTTCCAAGTACAA
CACGCAGTACACCCAGCATCAAAACGTTTAGTGCGTGAGCTGTTGATTCC
TGTGCTTGGTTGTAAGGTGAAAATCTTGAGGAATTCACCCCCTCCGTTCA
CTTCCTTCCCGCCACGCACCACCACCTCGAGACAGATCAGCGACCACCTG
ACGTGGGCGGGGGCGAACGCGGCGAGGATCGTCGGGGTGAAACACGCCTG
CCACGTCGCGTGGCCGCTCTTCATGCTCGAGCAGTGCGGCTTCCTGCCCG
CGCGCTCTCTCTCGGGCGTCCTCGGGGCCGCTGCCCGCGCCCTCCGCTCC
AGCCGCCTCGCCCCCGGTTTCTTGAAACCGCCAGGGCCGCCGAGGGCGAT
GCTGGACCGCGTCCGACAACAATGCTTGGGGGTCGAAGAGGGCTCGGCGG
GGCTGGTGCTGGTGAACTCTTTCGGGATCGAGCCTCCGCGGGCCTTGCCA
CCGTGCCTTAAGGTCATCGGTCGCGGGCACCTGCCGGAGACGGTGGAGGC
CCTGGAGGAACACCCGGAGCTCAAGGTACGGTTTGGTGCACGGGATGGGG
GGTCGGAAAGTGGAAACCGCGGGGGGTGTCTGTCTTGGGGTCTGGTGCGT
CGGTTGCGAATGCGTGGAGATTGTTCGCGCAGCCTTTGAATGAACTGTCT
CTGTTTGACTTTTCTCGGTGGAAGGAAGGGTGTTGGGTTTTTTTTTTTGC
TAATGCGTTTCATTCTCAAGCAACCCATTCCCCGACCGCGTGTTCTCGTT
AATCTCACCCCGCACACGAGTTCGAAGGGGGCCTTGTTTCACCCACCCAC
CGCTCCCGTTGTCCTGTTGCCACCGGTGGTGCCGCGATCGTTGGGCAGAC
TTTCCTCGACAGCAACGACGCCGTAGTGTACGTGACGTTCGGGAGCCGCG
TTACTCCCCCCCCTTCCCTCGTGCGGACCGTGGCGGAAGGGCTGGTGACC
GGAGGTTGGGCTGTGGTATGGTCGCTGAAGGAGGCCGATGCTTCACACCT
TCCTCCGGGTGAGTTTACGGCAGCAGGTCCGAGTCTTTGCACACCCAGAT
AAGACAGTCCTGCTGTAGTCTAGTGGTGTGGATATTACGAGCGACGGACA
CTCTCGTTGCATCCCAGACGGATCTTCACGCGCCGTTGTTTAGGAACAGG
CGTGCTGTAGACGCTGCGGTTTGCAAGATGAGATGGGGTGATGCTTAAGA
CCCGGACGGGTCACGGCGGACGAATCTCGTACAATCCACGTGGTGCTTTC
GTGTGTTACACGAAAGACCTAGTTCGTTCAGTTGCTGACAAGGCCTGCAG
TACGAAGGAAGGGAAGGAGTTAACTCGTCAGTCATGTGCTTGCCACCGAG
TCCTTTTCGTTTTCCCTTAGCTGAGTCCGTCCGATATCATCCCACGCGCT
GGCAAACGTTCGTGATGCTGTTTGTTTTCTACAGCCGCTCTCGCGTCAGG
GAGGTTCTTCGTTCGCCCGTGGCTTCCCCAGGGTGCCGCACTCGCCCACC
CGCACGTCAAGGTCGCGGTAAGTGAACGAAAAAAAAACTGTCGGGGCCGT
TTGCGGCAGTGCTCGTGTTCCATGAACGGAGAGGCGAATACTACCTCTTC
GAGGTTTTTGGGAGTATTTCCGTGAGGATTAATCTCTGCGTACAGATGCA
GACGGAGTTAGTTTACCGGACTTGTCGTGATCCAACGTCAGATGAGAGAA
CGTTTCACAACAAGGCATGTATACCAGGGGTCGAGACCGCGGTTCGTGCG
TCCCGATCAAGCGCTAAAGGGCCTCCTTCAAGCACATTCCTCACCCCATC
TCCCGGCCAACCAACCAACCAACCCCTCTCCACCCCGTCTCTAGGTGACG
CACTGCGGGATGGGAGGGCTCTACGAGTGTGCGGTGAACGCCGTCCCCAT
CGTGCCGCTCCCTTTCTCCCTGTCCGCGGACCAGCCGGTCAACGCGGCCA
TCGCGGAGGCGGCGGGTTTCGCGGTCCGCCCGCGCCCCCTCTCCAGGAAA
GCCACCGATTTACTCAAGTTTTGGAAGCGTCGCGGTGACCCGGAGTACGC
TCCCGCGGCCATTCACGACGCCGTGCTGAAGATTTTGCGGGACCCGTCTC
TGGCGGAGGGCGCACGCAGGGCGAAGCGCGCCGCGCTTGCGGCGGGCTAC
GGGCGCGTGGCGGTGGATGCTGTGGAGTCGACGTGAGTGTGTGTTGCTGA
GTATGGATGCTGCTTGTGCGATTCAATTGTGCCCCTGTGGGTTGGACTGT
CGTGGCTTGTTGGTGTCGAGGGTTTGGGATTGAATTTCCCCCGGAATGGA
GATGTTCGGTCTGTGGGGCAACCAGCACTCAGAGCTGAGCATCCCGGGGT
AAATCAGTTCCCGACACGACGGCTTTCGACTCGTAGCTGTCTTGGACGTA
TCACCCGCCCTTCACCCACACGCGACACATGAACCTGATGTGATTTCGCC
AACTCGCTCGCGCACACAACAAAAACTCACCCACCGCCGTTCGTCCACCC
ACGTCCCACCCAACCCTACCAACAGCTGTCTTTACGGCACAGATAACCTG
TCCGCGGGAAACGGAGGGATCAGAAATGCTGCCGGGGCGACGCAAACGTT
GCGGGGTATTGTTGGGGGAGTCGTGGTTGGCGCGGTATTGTCAGGGTTGT
TGGCCGTCAAGCTGTCGCATGGCGGGTGCCGCCGAACACGGTAAATTGCG
TGAACCCCGTTTCCACCGGTGGAAATTTTTGTAGTTTTCCGTCTGTGTCA
AGCGTATCCCGCACTGGCGGACGTCCCGAGGCATGTACAATAGGGTCTTG
GACTTTTGATGTCGGCGGTGTGGCACCGAGTGTACCCGGGCTCAGTTGTA
GCCCATCCCGATGTGATTATTGAAAGTTTGACAAATCAACCAATCAACC

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1024:5749..10947+

>mRNA_E-siliculosus-1a_F_contig1024.213.1 ID=mRNA_E-siliculosus-1a_F_contig1024.213.1|Name=mRNA_E-siliculosus-1a_F_contig1024.213.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2946bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1024:5749..10947+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCGTGTCCTCCACTGAGCCTCGTGCTCTGCTGCGTACCTTGCTATGG
CCATGCAAAGCCGCTGGTTCTCCTGGCGGAACATCTGGCAGAGGCTGGTC
ACGAGATGGCGTGTCCTCCACTGAGCCTCGTGCTCTGCTGCGTACCTTGC
TATGGCCATGCAAAGCCGCTGGTTCTCCTGGCGGAACATCTGGCAGAGGC
TGGTCACGAGGTCACCTTCGTCACATCGCAGCCCATGGTAGCTCGCATAC
AAGGGATGTGCAGGGACCCTCGCGTGGCGGTATTGGGACTGCAAGACGAG
CTTGTACCCGAGAGCGATCACTTCCTACTAGGAATGGTCACCTTCGTCAC
ATCGCAGCCCATGGTAGCTCGCATACAAGGGATGTGCAGGGACCCTCGCG
TGGCGGTATTGGGACTGCAAGACGAGCTTGTACCCGAGAGCGATCACTTC
CTACTAGGAATGCAACCGCACGTGAAGAAACACCCGGTTTGGTACGCGGA
GGAGAAAATGACCCCTTCCTTGGTGGCGTTGATCAAGGGCATGCCTCGCC
CTCCGGACATGATGCAACCGCACGTGAAGAAACACCCGGTTTGGTACGCG
GAGGAGAAAATGACCCCTTCCTTGGTGGCGTTGATCAAGGGCATGCCTCG
CCCTCCGGACATGATGATCAGCGACCACCTGACGTGGGCGGGGGCGAACG
CGGCGAGGATCGTCGGGGTGAAACACGCCTGCCACGTCGCGTGGCCGCTC
TTCATGCTCGAGCAGTGCGGCTTCCTGCCCGCGCGCTCTCTCTCGGGCGT
CCTCGGGGCCGCTGCCCGCGCCCTCCGCTCCAGCCGCCTCGCCCCCGGTT
TCTTGAAACCGCCAGGGCCGCCGAGGGCGATGCTGGACCGCGTCCGACAA
CAATGCTTGGGGGTCGAAGAGGGCTCGGCGGGGCTGGTGCTGGTGAACTC
TTTCGGGATCGAGCCTCCGCGGGCCTTGCCACCGTGCCTTAAGGTCATCG
GTCGCGGGCACCTGCCGGAGACGGTGGAGGCCCTGGAGGAACACCCGGAG
CTCAAGATCAGCGACCACCTGACGTGGGCGGGGGCGAACGCGGCGAGGAT
CGTCGGGGTGAAACACGCCTGCCACGTCGCGTGGCCGCTCTTCATGCTCG
AGCAGTGCGGCTTCCTGCCCGCGCGCTCTCTCTCGGGCGTCCTCGGGGCC
GCTGCCCGCGCCCTCCGCTCCAGCCGCCTCGCCCCCGGTTTCTTGAAACC
GCCAGGGCCGCCGAGGGCGATGCTGGACCGCGTCCGACAACAATGCTTGG
GGGTCGAAGAGGGCTCGGCGGGGCTGGTGCTGGTGAACTCTTTCGGGATC
GAGCCTCCGCGGGCCTTGCCACCGTGCCTTAAGGTCATCGGTCGCGGGCA
CCTGCCGGAGACGGTGGAGGCCCTGGAGGAACACCCGGAGCTCAAGACTT
TCCTCGACAGCAACGACGCCGTAGTGTACGTGACGTTCGGGAGCCGCGTT
ACTCCCCCCCCTTCCCTCGTGCGGACCGTGGCGGAAGGGCTGGTGACCGG
AGGTTGGGCTGTGGTATGGTCGCTGAAGGAGGCCGATGCTTCACACCTTC
CTCCGGACTTTCCTCGACAGCAACGACGCCGTAGTGTACGTGACGTTCGG
GAGCCGCGTTACTCCCCCCCCTTCCCTCGTGCGGACCGTGGCGGAAGGGC
TGGTGACCGGAGGTTGGGCTGTGGTATGGTCGCTGAAGGAGGCCGATGCT
TCACACCTTCCTCCGGCCGCTCTCGCGTCAGGGAGGTTCTTCGTTCGCCC
GTGGCTTCCCCAGGGTGCCGCACTCGCCCACCCGCACGTCAAGGTCGCGC
CGCTCTCGCGTCAGGGAGGTTCTTCGTTCGCCCGTGGCTTCCCCAGGGTG
CCGCACTCGCCCACCCGCACGTCAAGGTCGCGGTGACGCACTGCGGGATG
GGAGGGCTCTACGAGTGTGCGGTGAACGCCGTCCCCATCGTGCCGCTCCC
TTTCTCCCTGTCCGCGGACCAGCCGGTCAACGCGGCCATCGCGGAGGCGG
CGGGTTTCGCGGTCCGCCCGCGCCCCCTCTCCAGGAAAGCCACCGATTTA
CTCAAGTTTTGGAAGCGTCGCGGTGACCCGGAGTACGCTCCCGCGGCCAT
TCACGACGCCGTGCTGAAGATTTTGCGGGACCCGTCTCTGGCGGAGGGCG
CACGCAGGGCGAAGCGCGCCGCGCTTGCGGCGGGCTACGGGCGCGTGGCG
GTGGATGCTGTGGAGTCGACGTGACGCACTGCGGGATGGGAGGGCTCTAC
GAGTGTGCGGTGAACGCCGTCCCCATCGTGCCGCTCCCTTTCTCCCTGTC
CGCGGACCAGCCGGTCAACGCGGCCATCGCGGAGGCGGCGGGTTTCGCGG
TCCGCCCGCGCCCCCTCTCCAGGAAAGCCACCGATTTACTCAAGTTTTGG
AAGCGTCGCGGTGACCCGGAGTACGCTCCCGCGGCCATTCACGACGCCGT
GCTGAAGATTTTGCGGGACCCGTCTCTGGCGGAGGGCGCACGCAGGGCGA
AGCGCGCCGCGCTTGCGGCGGGCTACGGGCGCGTGGCGGTGGATGCTGTG
GAGTCGACCTGTCTTTACGGCACAGATAACCTGTCCGCGGGAAACGGAGG
GATCAGAAATGCTGCCGGGGCGACGCAAACGTTGCGGGGTATTGTTGGGG
GAGTCGTGGTTGGCGCGGTATTGTCAGGGTTGTTGGCCGTCAAGCTGTCG
CATGGCGGGTGCCGCCGAACACGGTAACTGTCTTTACGGCACAGATAACC
TGTCCGCGGGAAACGGAGGGATCAGAAATGCTGCCGGGGCGACGCAAACG
TTGCGGGGTATTGTTGGGGGAGTCGTGGTTGGCGCGGTATTGTCAGGGTT
GTTGGCCGTCAAGCTGTCGCATGGCGGGTGCCGCCGAACACGGTAA