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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10215.204.1 vs. uniprot
Match: A0A6H5JGM7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGM7_9PHAE) HSP 1 Score: 71.2 bits (173), Expect = 1.710e-14 Identity = 29/49 (59.18%), Postives = 39/49 (79.59%), Query Frame = 1 Query: 4 GDPLRVGECICTRPDCVGGMYKKFKRRREKEENGSRNYMVVGQASPMGR 150
GDPL+ GECIC R DCV +Y+++K RR++EE G+ + MV+GQ SPMGR
Sbjct: 74 GDPLKAGECICRRADCVVNLYQRYKGRRQREEKGALHTMVIGQRSPMGR 122
BLAST of mRNA_E-siliculosus-1a_F_contig10215.204.1 vs. uniprot
Match: D7FTC1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTC1_ECTSI) HSP 1 Score: 62.0 bits (149), Expect = 4.360e-11 Identity = 31/34 (91.18%), Postives = 31/34 (91.18%), Query Frame = 3 Query: 6 RPSQGGRVHLYTARLRRRDVQKVQEAPREGRKRV 107
RPSQ GRVHLYTARLR RDVQKVQEAPREG KRV
Sbjct: 69 RPSQSGRVHLYTARLRWRDVQKVQEAPREGGKRV 102
BLAST of mRNA_E-siliculosus-1a_F_contig10215.204.1 vs. uniprot
Match: A0A6H5KE39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE39_9PHAE) HSP 1 Score: 51.6 bits (122), Expect = 6.100e-7 Identity = 19/24 (79.17%), Postives = 22/24 (91.67%), Query Frame = 1 Query: 1 QGDPLRVGECICTRPDCVGGMYKK 72
QGDPL+VGECICTRPDC GG+ +K
Sbjct: 72 QGDPLKVGECICTRPDCAGGIVQK 95
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 0 |
| Stop | 1 |
| Cds size | 177 |
| Model size | 177 |
| Exons | 1 |
| Ec32 ortholog | Ec-05_000310.1 |
| Ec32 ortholog description | expressed unknown protein |
| Hectar predicted targeting category | no signal peptide or anchor |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927526.0183363-CDS-E-siliculosus-1a_F_contig10215:2325..2502 | 1622927526.0183363-CDS-E-siliculosus-1a_F_contig10215:2325..2502 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig10215 2326..2502 - |
| 1696318567.647155-CDS-E-siliculosus-1a_F_contig10215:2325..2502 | 1696318567.647155-CDS-E-siliculosus-1a_F_contig10215:2325..2502 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig10215 2326..2502 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10215.204.1 >prot_E-siliculosus-1a_F_contig10215.204.1 ID=prot_E-siliculosus-1a_F_contig10215.204.1|Name=mRNA_E-siliculosus-1a_F_contig10215.204.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=59bp
QGDPLRVGECICTRPDCVGGMYKKFKRRREKEENGSRNYMVVGQASPMGR
YPSTGFQV* back to topmRNA from alignment at E-siliculosus-1a_F_contig10215:2326..2502- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig10215.204.1 ID=mRNA_E-siliculosus-1a_F_contig10215.204.1|Name=mRNA_E-siliculosus-1a_F_contig10215.204.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=177bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10215:2326..2502- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGGGAGACCCTCTCAGGGTGGGAGAGTGCATCTGTACACGGCCCGACTG
CGTCGGCGGGATGTACAAAAAGTTCAAGAGGCGCCGAGAGAAGGAAGAAA
ACGGGTCTAGAAACTACATGGTGGTTGGGCAGGCGTCACCGATGGGCCGA
TACCCTTCCACGGGCTTTCAGGTATGA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10215:2326..2502- >mRNA_E-siliculosus-1a_F_contig10215.204.1 ID=mRNA_E-siliculosus-1a_F_contig10215.204.1|Name=mRNA_E-siliculosus-1a_F_contig10215.204.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=354bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10215:2326..2502- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGGGAGACCCTCTCAGGGTGGGAGAGTGCATCTGTACACGGCCCGACTG
CGTCGGCGGGATGTACAAAAAGTTCAAGAGGCGCCGAGAGAAGGAAGAAA
ACGGGTCTAGAAACTACATGGTGGTTGGGCAGGCGTCACCGATGGGCCGA
TACCCTTCCACGGGCTTTCAGGTATGACAGGGAGACCCTCTCAGGGTGGG
AGAGTGCATCTGTACACGGCCCGACTGCGTCGGCGGGATGTACAAAAAGT
TCAAGAGGCGCCGAGAGAAGGAAGAAAACGGGTCTAGAAACTACATGGTG
GTTGGGCAGGCGTCACCGATGGGCCGATACCCTTCCACGGGCTTTCAGGT
ATGA back to top
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