mRNA_E-siliculosus-1a_F_contig10215.204.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10215.204.1
Unique NamemRNA_E-siliculosus-1a_F_contig10215.204.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig10215.204.1 vs. uniprot
Match: A0A6H5JGM7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGM7_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 1.710e-14
Identity = 29/49 (59.18%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:    4 GDPLRVGECICTRPDCVGGMYKKFKRRREKEENGSRNYMVVGQASPMGR 150
            GDPL+ GECIC R DCV  +Y+++K RR++EE G+ + MV+GQ SPMGR
Sbjct:   74 GDPLKAGECICRRADCVVNLYQRYKGRRQREEKGALHTMVIGQRSPMGR 122
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BLAST of mRNA_E-siliculosus-1a_F_contig10215.204.1 vs. uniprot
Match: D7FTC1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTC1_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 4.360e-11
Identity = 31/34 (91.18%), Postives = 31/34 (91.18%), Query Frame = 3 
Query:    6 RPSQGGRVHLYTARLRRRDVQKVQEAPREGRKRV 107
            RPSQ GRVHLYTARLR RDVQKVQEAPREG KRV
Sbjct:   69 RPSQSGRVHLYTARLRWRDVQKVQEAPREGGKRV 102
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BLAST of mRNA_E-siliculosus-1a_F_contig10215.204.1 vs. uniprot
Match: A0A6H5KE39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE39_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 6.100e-7
Identity = 19/24 (79.17%), Postives = 22/24 (91.67%), Query Frame = 1 
Query:    1 QGDPLRVGECICTRPDCVGGMYKK 72
            QGDPL+VGECICTRPDC GG+ +K
Sbjct:   72 QGDPLKVGECICTRPDCAGGIVQK 95
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10215.204.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JGM7_9PHAE1.710e-1459.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTC1_ECTSI4.360e-1191.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KE39_9PHAE6.100e-779.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10215contigE-siliculosus-1a_F_contig10215:2326..2502 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size177
Model size177
Exons1
Ec32 orthologEc-05_000310.1
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927526.0183363-CDS-E-siliculosus-1a_F_contig10215:2325..25021622927526.0183363-CDS-E-siliculosus-1a_F_contig10215:2325..2502Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10215 2326..2502 -
1696318567.647155-CDS-E-siliculosus-1a_F_contig10215:2325..25021696318567.647155-CDS-E-siliculosus-1a_F_contig10215:2325..2502Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10215 2326..2502 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10215.204.1prot_E-siliculosus-1a_F_contig10215.204.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10215 2326..2502 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10215.204.1

>prot_E-siliculosus-1a_F_contig10215.204.1 ID=prot_E-siliculosus-1a_F_contig10215.204.1|Name=mRNA_E-siliculosus-1a_F_contig10215.204.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=59bp
QGDPLRVGECICTRPDCVGGMYKKFKRRREKEENGSRNYMVVGQASPMGR
YPSTGFQV*
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mRNA from alignment at E-siliculosus-1a_F_contig10215:2326..2502-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10215.204.1 ID=mRNA_E-siliculosus-1a_F_contig10215.204.1|Name=mRNA_E-siliculosus-1a_F_contig10215.204.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=177bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10215:2326..2502- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGGGAGACCCTCTCAGGGTGGGAGAGTGCATCTGTACACGGCCCGACTG
CGTCGGCGGGATGTACAAAAAGTTCAAGAGGCGCCGAGAGAAGGAAGAAA
ACGGGTCTAGAAACTACATGGTGGTTGGGCAGGCGTCACCGATGGGCCGA
TACCCTTCCACGGGCTTTCAGGTATGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10215:2326..2502-

>mRNA_E-siliculosus-1a_F_contig10215.204.1 ID=mRNA_E-siliculosus-1a_F_contig10215.204.1|Name=mRNA_E-siliculosus-1a_F_contig10215.204.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=354bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10215:2326..2502- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGGGAGACCCTCTCAGGGTGGGAGAGTGCATCTGTACACGGCCCGACTG
CGTCGGCGGGATGTACAAAAAGTTCAAGAGGCGCCGAGAGAAGGAAGAAA
ACGGGTCTAGAAACTACATGGTGGTTGGGCAGGCGTCACCGATGGGCCGA
TACCCTTCCACGGGCTTTCAGGTATGACAGGGAGACCCTCTCAGGGTGGG
AGAGTGCATCTGTACACGGCCCGACTGCGTCGGCGGGATGTACAAAAAGT
TCAAGAGGCGCCGAGAGAAGGAAGAAAACGGGTCTAGAAACTACATGGTG
GTTGGGCAGGCGTCACCGATGGGCCGATACCCTTCCACGGGCTTTCAGGT
ATGA
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