Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10213.202.1 vs. uniprot
Match:
D1J765_ECTSI (Uncharacterized protein ycf47 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J765_ECTSI)
HSP 1 Score: 106 bits (264), Expect = 9.110e-29
Identity = 62/64 (96.88%), Postives = 62/64 (96.88%), Query Frame = 1
Query: 1 LLNILLISIILIRSSNEQSLQENLAPFKFFESSSRAEKSIDKLIQILTILYFIIALIYIIQSYF 192
LLNILLISIILIRS NEQSLQENLAPFKFFESSSRAEKSIDKLIQILTI YFIIALIYIIQSYF
Sbjct: 13 LLNILLISIILIRSPNEQSLQENLAPFKFFESSSRAEKSIDKLIQILTIFYFIIALIYIIQSYF 76
BLAST of mRNA_E-siliculosus-1a_F_contig10213.202.1 vs. uniprot
Match:
A0A5A4MI59_9PHAE (Uncharacterized protein n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A5A4MI59_9PHAE)
HSP 1 Score: 97.8 bits (242), Expect = 2.070e-25
Identity = 53/64 (82.81%), Postives = 60/64 (93.75%), Query Frame = 1
Query: 1 LLNILLISIILIRSSNEQSLQENLAPFKFFESSSRAEKSIDKLIQILTILYFIIALIYIIQSYF 192
LLNILLI +IL+RS NEQSLQENLAPFK FESSSRAEKSIDK IQ+LT+LYF++ALIY+IQSYF
Sbjct: 13 LLNILLILVILVRSPNEQSLQENLAPFKLFESSSRAEKSIDKFIQLLTVLYFLLALIYVIQSYF 76
BLAST of mRNA_E-siliculosus-1a_F_contig10213.202.1 vs. uniprot
Match:
A0A344PF79_9PHAE (Uncharacterized protein n=1 Tax=Endarachne binghamiae TaxID=698476 RepID=A0A344PF79_9PHAE)
HSP 1 Score: 93.6 bits (231), Expect = 9.840e-24
Identity = 52/64 (81.25%), Postives = 60/64 (93.75%), Query Frame = 1
Query: 1 LLNILLISIILIRSSNEQSLQENLAPFKFFESSSRAEKSIDKLIQILTILYFIIALIYIIQSYF 192
+LNILLI IILIRS NEQSLQENLAPF+ FESSSRAEKSIDK+IQ+LTI YF++AL+Y+IQSYF
Sbjct: 13 MLNILLILIILIRSPNEQSLQENLAPFRLFESSSRAEKSIDKVIQLLTIGYFLLALLYVIQSYF 76
BLAST of mRNA_E-siliculosus-1a_F_contig10213.202.1 vs. uniprot
Match:
A0A0R6LUQ0_UNDPI (Probable protein-export membrane protein SecG n=23 Tax=Laminariales TaxID=2886 RepID=A0A0R6LUQ0_UNDPI)
HSP 1 Score: 90.1 bits (222), Expect = 2.320e-22
Identity = 50/64 (78.12%), Postives = 56/64 (87.50%), Query Frame = 1
Query: 1 LLNILLISIILIRSSNEQSLQENLAPFKFFESSSRAEKSIDKLIQILTILYFIIALIYIIQSYF 192
+LN L+ IIL+RS NEQSLQENL PFK FESSSRAEKSIDKLIQILTILYF++AL+Y IQ YF
Sbjct: 13 ILNFSLVLIILVRSPNEQSLQENLDPFKLFESSSRAEKSIDKLIQILTILYFVLALVYTIQRYF 76
BLAST of mRNA_E-siliculosus-1a_F_contig10213.202.1 vs. uniprot
Match:
A0A6B7EUY5_9PHAE (Uncharacterized protein n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EUY5_9PHAE)
HSP 1 Score: 88.6 bits (218), Expect = 8.720e-22
Identity = 52/64 (81.25%), Postives = 55/64 (85.94%), Query Frame = 1
Query: 1 LLNILLISIILIRSSNEQSLQENLAPFKFFESSSRAEKSIDKLIQILTILYFIIALIYIIQSYF 192
LLNILLI IILIRS NEQSLQENL PFK FESS RAE SIDKL+QILTILYF IA+ Y+I SYF
Sbjct: 10 LLNILLILIILIRSPNEQSLQENLIPFKLFESSRRAETSIDKLLQILTILYFTIAICYVIGSYF 73
BLAST of mRNA_E-siliculosus-1a_F_contig10213.202.1 vs. uniprot
Match:
A0A8F0F7T2_9PHAE (Probable protein-export membrane protein SecG n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7T2_9PHAE)
HSP 1 Score: 85.1 bits (209), Expect = 2.230e-20
Identity = 48/62 (77.42%), Postives = 53/62 (85.48%), Query Frame = 1
Query: 7 NILLISIILIRSSNEQSLQENLAPFKFFESSSRAEKSIDKLIQILTILYFIIALIYIIQSYF 192
NILLI +IL+RS NEQSLQENL P K FESSS+AEKSIDKLIQIL I YF++AL Y IQSYF
Sbjct: 15 NILLILVILVRSPNEQSLQENLDPLKLFESSSKAEKSIDKLIQILAIFYFVLALCYNIQSYF 76
BLAST of mRNA_E-siliculosus-1a_F_contig10213.202.1 vs. uniprot
Match:
A0A8F0F9M4_9PHAE (Uncharacterized protein n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9M4_9PHAE)
HSP 1 Score: 81.3 bits (199), Expect = 7.440e-19
Identity = 45/64 (70.31%), Postives = 53/64 (82.81%), Query Frame = 1
Query: 1 LLNILLISIILIRSSNEQSLQENLAPFKFFESSSRAEKSIDKLIQILTILYFIIALIYIIQSYF 192
+LNI+LI +IL+RS NEQSLQENL PF FESSSRAEKSID+LI+ LT +YF +AL Y IQ YF
Sbjct: 13 ILNIVLILVILVRSPNEQSLQENLDPFNLFESSSRAEKSIDRLIKRLTFMYFFLALFYAIQGYF 76
BLAST of mRNA_E-siliculosus-1a_F_contig10213.202.1 vs. uniprot
Match:
A0A2R4QPS9_9PHAE (Hypothetical chloroplast protein ycf47 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPS9_9PHAE)
HSP 1 Score: 80.5 bits (197), Expect = 1.500e-18
Identity = 46/63 (73.02%), Postives = 54/63 (85.71%), Query Frame = 1
Query: 4 LNILLISIILIRSSNEQSLQENLAPFKFFESSSRAEKSIDKLIQILTILYFIIALIYIIQSYF 192
+NI+LI IILIRS NEQSLQENL PFKFFESSS+AE ID LIQIL +LYF +AL+Y I++YF
Sbjct: 14 INIILIFIILIRSPNEQSLQENLDPFKFFESSSKAEIFIDNLIQILVVLYFSLALLYNIKNYF 76
BLAST of mRNA_E-siliculosus-1a_F_contig10213.202.1 vs. uniprot
Match:
A0A141BSB1_9PHAE (Probable protein-export membrane protein SecG n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSB1_9PHAE)
HSP 1 Score: 76.6 bits (187), Expect = 4.640e-17
Identity = 44/63 (69.84%), Postives = 52/63 (82.54%), Query Frame = 1
Query: 1 LLNILLISIILIRSSNEQSLQENLAPFKFFESSSRAEKSIDKLIQILTILYFIIALIYIIQSY 189
++N L+ IILIRS NEQSLQENL PFK FESSS+AE SID LI+ILTI+YF IAL Y I++Y
Sbjct: 10 IVNFFLVLIILIRSPNEQSLQENLDPFKIFESSSKAENSIDNLIKILTIIYFSIALAYNIKNY 72
BLAST of mRNA_E-siliculosus-1a_F_contig10213.202.1 vs. uniprot
Match:
A0A1I9LVL0_9PHAE (Uncharacterized protein n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVL0_9PHAE)
HSP 1 Score: 76.3 bits (186), Expect = 7.120e-17
Identity = 45/63 (71.43%), Postives = 51/63 (80.95%), Query Frame = 1
Query: 4 LNILLISIILIRSSNEQSLQENLAPFKFFESSSRAEKSIDKLIQILTILYFIIALIYIIQSYF 192
LNILLISIILIRS NE SL+ENL PF FF SSS AEKSID LI +L YF++ALI+IIQ +F
Sbjct: 14 LNILLISIILIRSPNEISLKENLTPFNFFASSSSAEKSIDNLIIVLITFYFLLALIHIIQGFF 76
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10213.202.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90 )
Total hits: 14
0 1 Expect = 9.11e-29 / Id = 96.88 Expect = 2.07e-25 / Id = 82.81 Expect = 9.84e-24 / Id = 81.25 Expect = 2.32e-22 / Id = 78.13 Expect = 8.72e-22 / Id = 81.25 Expect = 2.23e-20 / Id = 77.42 Expect = 7.44e-19 / Id = 70.31 Expect = 1.50e-18 / Id = 73.02 Expect = 4.64e-17 / Id = 69.84 Expect = 7.12e-17 / Id = 71.43 Sequence D1J765_ECTSI A0A5A4MI59_9PHAE A0A344PF79_9PHAE A0A0R6LUQ0_UNDPI A0A6B7EUY5_9PHAE A0A8F0F7T2_9PHAE A0A8F0F9M4_9PHAE A0A2R4QPS9_9PHAE A0A141BSB1_9PHAE A0A1I9LVL0_9PHAE Pages
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Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10213.202.1
>prot_E-siliculosus-1a_F_contig10213.202.1 ID=prot_E-siliculosus-1a_F_contig10213.202.1|Name=mRNA_E-siliculosus-1a_F_contig10213.202.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=65bp
LLNILLISIILIRSSNEQSLQENLAPFKFFESSSRAEKSIDKLIQILTIL back to top mRNA from alignment at E-siliculosus-1a_F_contig10213:2434..2628-
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10213.202.1 ID=mRNA_E-siliculosus-1a_F_contig10213.202.1|Name=mRNA_E-siliculosus-1a_F_contig10213.202.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=195bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10213:2434..2628- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)TTACTTAATATATTATTAATATCAATTATATTAATTAGAAGCTCTAACGA
ACAAAGTTTACAAGAAAACTTAGCTCCATTTAAATTTTTTGAAAGTTCTA
GTCGTGCAGAAAAATCAATTGATAAATTAATTCAAATATTAACTATTTTA
TACTTTATAATAGCTCTAATTTATATTATTCAAAGTTATTTTTAA back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10213:2434..2628-
>mRNA_E-siliculosus-1a_F_contig10213.202.1 ID=mRNA_E-siliculosus-1a_F_contig10213.202.1|Name=mRNA_E-siliculosus-1a_F_contig10213.202.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=390bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10213:2434..2628- (Ectocarpus siliculosus Ec863f_EcPH12_90f female) back to top