mRNA_E-siliculosus-1a_F_contig10213.202.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10213.202.1
Unique NamemRNA_E-siliculosus-1a_F_contig10213.202.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10213.202.1 vs. uniprot
Match: D1J765_ECTSI (Uncharacterized protein ycf47 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J765_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 9.110e-29
Identity = 62/64 (96.88%), Postives = 62/64 (96.88%), Query Frame = 1
Query:    1 LLNILLISIILIRSSNEQSLQENLAPFKFFESSSRAEKSIDKLIQILTILYFIIALIYIIQSYF 192
            LLNILLISIILIRS NEQSLQENLAPFKFFESSSRAEKSIDKLIQILTI YFIIALIYIIQSYF
Sbjct:   13 LLNILLISIILIRSPNEQSLQENLAPFKFFESSSRAEKSIDKLIQILTIFYFIIALIYIIQSYF 76          
BLAST of mRNA_E-siliculosus-1a_F_contig10213.202.1 vs. uniprot
Match: A0A5A4MI59_9PHAE (Uncharacterized protein n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A5A4MI59_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 2.070e-25
Identity = 53/64 (82.81%), Postives = 60/64 (93.75%), Query Frame = 1
Query:    1 LLNILLISIILIRSSNEQSLQENLAPFKFFESSSRAEKSIDKLIQILTILYFIIALIYIIQSYF 192
            LLNILLI +IL+RS NEQSLQENLAPFK FESSSRAEKSIDK IQ+LT+LYF++ALIY+IQSYF
Sbjct:   13 LLNILLILVILVRSPNEQSLQENLAPFKLFESSSRAEKSIDKFIQLLTVLYFLLALIYVIQSYF 76          
BLAST of mRNA_E-siliculosus-1a_F_contig10213.202.1 vs. uniprot
Match: A0A344PF79_9PHAE (Uncharacterized protein n=1 Tax=Endarachne binghamiae TaxID=698476 RepID=A0A344PF79_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 9.840e-24
Identity = 52/64 (81.25%), Postives = 60/64 (93.75%), Query Frame = 1
Query:    1 LLNILLISIILIRSSNEQSLQENLAPFKFFESSSRAEKSIDKLIQILTILYFIIALIYIIQSYF 192
            +LNILLI IILIRS NEQSLQENLAPF+ FESSSRAEKSIDK+IQ+LTI YF++AL+Y+IQSYF
Sbjct:   13 MLNILLILIILIRSPNEQSLQENLAPFRLFESSSRAEKSIDKVIQLLTIGYFLLALLYVIQSYF 76          
BLAST of mRNA_E-siliculosus-1a_F_contig10213.202.1 vs. uniprot
Match: A0A0R6LUQ0_UNDPI (Probable protein-export membrane protein SecG n=23 Tax=Laminariales TaxID=2886 RepID=A0A0R6LUQ0_UNDPI)

HSP 1 Score: 90.1 bits (222), Expect = 2.320e-22
Identity = 50/64 (78.12%), Postives = 56/64 (87.50%), Query Frame = 1
Query:    1 LLNILLISIILIRSSNEQSLQENLAPFKFFESSSRAEKSIDKLIQILTILYFIIALIYIIQSYF 192
            +LN  L+ IIL+RS NEQSLQENL PFK FESSSRAEKSIDKLIQILTILYF++AL+Y IQ YF
Sbjct:   13 ILNFSLVLIILVRSPNEQSLQENLDPFKLFESSSRAEKSIDKLIQILTILYFVLALVYTIQRYF 76          
BLAST of mRNA_E-siliculosus-1a_F_contig10213.202.1 vs. uniprot
Match: A0A6B7EUY5_9PHAE (Uncharacterized protein n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EUY5_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 8.720e-22
Identity = 52/64 (81.25%), Postives = 55/64 (85.94%), Query Frame = 1
Query:    1 LLNILLISIILIRSSNEQSLQENLAPFKFFESSSRAEKSIDKLIQILTILYFIIALIYIIQSYF 192
            LLNILLI IILIRS NEQSLQENL PFK FESS RAE SIDKL+QILTILYF IA+ Y+I SYF
Sbjct:   10 LLNILLILIILIRSPNEQSLQENLIPFKLFESSRRAETSIDKLLQILTILYFTIAICYVIGSYF 73          
BLAST of mRNA_E-siliculosus-1a_F_contig10213.202.1 vs. uniprot
Match: A0A8F0F7T2_9PHAE (Probable protein-export membrane protein SecG n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7T2_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 2.230e-20
Identity = 48/62 (77.42%), Postives = 53/62 (85.48%), Query Frame = 1
Query:    7 NILLISIILIRSSNEQSLQENLAPFKFFESSSRAEKSIDKLIQILTILYFIIALIYIIQSYF 192
            NILLI +IL+RS NEQSLQENL P K FESSS+AEKSIDKLIQIL I YF++AL Y IQSYF
Sbjct:   15 NILLILVILVRSPNEQSLQENLDPLKLFESSSKAEKSIDKLIQILAIFYFVLALCYNIQSYF 76          
BLAST of mRNA_E-siliculosus-1a_F_contig10213.202.1 vs. uniprot
Match: A0A8F0F9M4_9PHAE (Uncharacterized protein n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9M4_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 7.440e-19
Identity = 45/64 (70.31%), Postives = 53/64 (82.81%), Query Frame = 1
Query:    1 LLNILLISIILIRSSNEQSLQENLAPFKFFESSSRAEKSIDKLIQILTILYFIIALIYIIQSYF 192
            +LNI+LI +IL+RS NEQSLQENL PF  FESSSRAEKSID+LI+ LT +YF +AL Y IQ YF
Sbjct:   13 ILNIVLILVILVRSPNEQSLQENLDPFNLFESSSRAEKSIDRLIKRLTFMYFFLALFYAIQGYF 76          
BLAST of mRNA_E-siliculosus-1a_F_contig10213.202.1 vs. uniprot
Match: A0A2R4QPS9_9PHAE (Hypothetical chloroplast protein ycf47 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPS9_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.500e-18
Identity = 46/63 (73.02%), Postives = 54/63 (85.71%), Query Frame = 1
Query:    4 LNILLISIILIRSSNEQSLQENLAPFKFFESSSRAEKSIDKLIQILTILYFIIALIYIIQSYF 192
            +NI+LI IILIRS NEQSLQENL PFKFFESSS+AE  ID LIQIL +LYF +AL+Y I++YF
Sbjct:   14 INIILIFIILIRSPNEQSLQENLDPFKFFESSSKAEIFIDNLIQILVVLYFSLALLYNIKNYF 76          
BLAST of mRNA_E-siliculosus-1a_F_contig10213.202.1 vs. uniprot
Match: A0A141BSB1_9PHAE (Probable protein-export membrane protein SecG n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSB1_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 4.640e-17
Identity = 44/63 (69.84%), Postives = 52/63 (82.54%), Query Frame = 1
Query:    1 LLNILLISIILIRSSNEQSLQENLAPFKFFESSSRAEKSIDKLIQILTILYFIIALIYIIQSY 189
            ++N  L+ IILIRS NEQSLQENL PFK FESSS+AE SID LI+ILTI+YF IAL Y I++Y
Sbjct:   10 IVNFFLVLIILIRSPNEQSLQENLDPFKIFESSSKAENSIDNLIKILTIIYFSIALAYNIKNY 72          
BLAST of mRNA_E-siliculosus-1a_F_contig10213.202.1 vs. uniprot
Match: A0A1I9LVL0_9PHAE (Uncharacterized protein n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVL0_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 7.120e-17
Identity = 45/63 (71.43%), Postives = 51/63 (80.95%), Query Frame = 1
Query:    4 LNILLISIILIRSSNEQSLQENLAPFKFFESSSRAEKSIDKLIQILTILYFIIALIYIIQSYF 192
            LNILLISIILIRS NE SL+ENL PF FF SSS AEKSID LI +L   YF++ALI+IIQ +F
Sbjct:   14 LNILLISIILIRSPNEISLKENLTPFNFFASSSSAEKSIDNLIIVLITFYFLLALIHIIQGFF 76          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10213.202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D1J765_ECTSI9.110e-2996.88Uncharacterized protein ycf47 n=2 Tax=Ectocarpus s... [more]
A0A5A4MI59_9PHAE2.070e-2582.81Uncharacterized protein n=4 Tax=Scytosiphonaceae T... [more]
A0A344PF79_9PHAE9.840e-2481.25Uncharacterized protein n=1 Tax=Endarachne bingham... [more]
A0A0R6LUQ0_UNDPI2.320e-2278.13Probable protein-export membrane protein SecG n=23... [more]
A0A6B7EUY5_9PHAE8.720e-2281.25Uncharacterized protein n=1 Tax=Cladosiphon okamur... [more]
A0A8F0F7T2_9PHAE2.230e-2077.42Probable protein-export membrane protein SecG n=2 ... [more]
A0A8F0F9M4_9PHAE7.440e-1970.31Uncharacterized protein n=1 Tax=Chorda asiatica Ta... [more]
A0A2R4QPS9_9PHAE1.500e-1873.02Hypothetical chloroplast protein ycf47 n=3 Tax=Fuc... [more]
A0A141BSB1_9PHAE4.640e-1769.84Probable protein-export membrane protein SecG n=14... [more]
A0A1I9LVL0_9PHAE7.120e-1771.43Uncharacterized protein n=1 Tax=Pleurocladia lacus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10213contigE-siliculosus-1a_F_contig10213:2434..2628 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size195
Model size195
Exons1
Hectar predicted targeting categorysignal anchor
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927525.8577511-CDS-E-siliculosus-1a_F_contig10213:2433..26281622927525.8577511-CDS-E-siliculosus-1a_F_contig10213:2433..2628Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10213 2434..2628 -
1696318567.5955281-CDS-E-siliculosus-1a_F_contig10213:2433..26281696318567.5955281-CDS-E-siliculosus-1a_F_contig10213:2433..2628Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10213 2434..2628 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10213.202.1prot_E-siliculosus-1a_F_contig10213.202.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10213 2434..2628 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10213.202.1

>prot_E-siliculosus-1a_F_contig10213.202.1 ID=prot_E-siliculosus-1a_F_contig10213.202.1|Name=mRNA_E-siliculosus-1a_F_contig10213.202.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=65bp
LLNILLISIILIRSSNEQSLQENLAPFKFFESSSRAEKSIDKLIQILTIL
YFIIALIYIIQSYF*
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mRNA from alignment at E-siliculosus-1a_F_contig10213:2434..2628-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10213.202.1 ID=mRNA_E-siliculosus-1a_F_contig10213.202.1|Name=mRNA_E-siliculosus-1a_F_contig10213.202.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=195bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10213:2434..2628- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTACTTAATATATTATTAATATCAATTATATTAATTAGAAGCTCTAACGA ACAAAGTTTACAAGAAAACTTAGCTCCATTTAAATTTTTTGAAAGTTCTA GTCGTGCAGAAAAATCAATTGATAAATTAATTCAAATATTAACTATTTTA TACTTTATAATAGCTCTAATTTATATTATTCAAAGTTATTTTTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10213:2434..2628-

>mRNA_E-siliculosus-1a_F_contig10213.202.1 ID=mRNA_E-siliculosus-1a_F_contig10213.202.1|Name=mRNA_E-siliculosus-1a_F_contig10213.202.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=390bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10213:2434..2628- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTACTTAATATATTATTAATATCAATTATATTAATTAGAAGCTCTAACGA
ACAAAGTTTACAAGAAAACTTAGCTCCATTTAAATTTTTTGAAAGTTCTA
GTCGTGCAGAAAAATCAATTGATAAATTAATTCAAATATTAACTATTTTA
TACTTTATAATAGCTCTAATTTATATTATTCAAAGTTATTTTTAATTACT
TAATATATTATTAATATCAATTATATTAATTAGAAGCTCTAACGAACAAA
GTTTACAAGAAAACTTAGCTCCATTTAAATTTTTTGAAAGTTCTAGTCGT
GCAGAAAAATCAATTGATAAATTAATTCAAATATTAACTATTTTATACTT
TATAATAGCTCTAATTTATATTATTCAAAGTTATTTTTAA
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