Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10213.201.1 vs. uniprot
Match:
D1J767_ECTSI (50S ribosomal protein L19, chloroplastic n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J767_ECTSI)
HSP 1 Score: 224 bits (571), Expect = 7.320e-74
Identity = 116/120 (96.67%), Postives = 120/120 (100.00%), Query Frame = 1
Query: 1 TFMNNQFIESVEKIYIKKNLKKLFVGDTVKVGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRRSKLYYLRNIIGKAGRLKQRVKKK 360
TFMNN+FIESVEK+YIKKNLKKLFVGDTVK+GVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVR+SKLYYLRNIIGKAGRLKQRVKKK
Sbjct: 11 TFMNNRFIESVEKVYIKKNLKKLFVGDTVKIGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRKSKLYYLRNIIGKAGRLKQRVKKK 130
BLAST of mRNA_E-siliculosus-1a_F_contig10213.201.1 vs. uniprot
Match:
A0A1I9LVW4_9PHAE (50S ribosomal protein L19, chloroplastic n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVW4_9PHAE)
HSP 1 Score: 213 bits (541), Expect = 3.570e-69
Identity = 107/119 (89.92%), Postives = 117/119 (98.32%), Query Frame = 1
Query: 4 FMNNQFIESVEKIYIKKNLKKLFVGDTVKVGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRRSKLYYLRNIIGKAGRLKQRVKKK 360
F+NN+FIESVEK++IKKNLKKLFVGDTVKVGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIG+ERAFLVNSPK ASIE++KS+R+RRSKLYYLRNIIGKAGRLK+R KKK
Sbjct: 20 FINNRFIESVEKVHIKKNLKKLFVGDTVKVGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGVERAFLVNSPKFASIEVIKSSRIRRSKLYYLRNIIGKAGRLKERFKKK 138
BLAST of mRNA_E-siliculosus-1a_F_contig10213.201.1 vs. uniprot
Match:
A0A6B7EVN0_9PHAE (50S ribosomal protein L19 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EVN0_9PHAE)
HSP 1 Score: 206 bits (524), Expect = 1.070e-66
Identity = 104/119 (87.39%), Postives = 115/119 (96.64%), Query Frame = 1
Query: 4 FMNNQFIESVEKIYIKKNLKKLFVGDTVKVGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRRSKLYYLRNIIGKAGRLKQRVKKK 360
FMNN+FI+SVEK+++KK+LKKLFVGDTVKVGVFVEEGNKERVQFYEGIILAKSKSCINFTIS+RKVFQGIG+ERAFLVNSPK ASIE+LKS+RV +SKLYYLRNIIGKAGRLKQR KK
Sbjct: 12 FMNNRFIKSVEKVHMKKDLKKLFVGDTVKVGVFVEEGNKERVQFYEGIILAKSKSCINFTISIRKVFQGIGVERAFLVNSPKFASIEVLKSSRVSKSKLYYLRNIIGKAGRLKQRFNKK 130
BLAST of mRNA_E-siliculosus-1a_F_contig10213.201.1 vs. uniprot
Match:
A0A7T8JK70_SCYLO (50S ribosomal protein L19, chloroplastic n=5 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A7T8JK70_SCYLO)
HSP 1 Score: 197 bits (502), Expect = 4.350e-63
Identity = 100/119 (84.03%), Postives = 112/119 (94.12%), Query Frame = 1
Query: 4 FMNNQFIESVEKIYIKKNLKKLFVGDTVKVGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRRSKLYYLRNIIGKAGRLKQRVKKK 360
FMNN+ IESVE++++K+NLK+LFVGDTVKVG+ VEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIG+ERAFLVNSPK SIE+LKSARV +SKLYYLRNIIGKAGRLKQ KK+
Sbjct: 30 FMNNKLIESVEQVHMKENLKELFVGDTVKVGISVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGVERAFLVNSPKFVSIEVLKSARVSKSKLYYLRNIIGKAGRLKQSFKKR 148
BLAST of mRNA_E-siliculosus-1a_F_contig10213.201.1 vs. uniprot
Match:
A0A0R6LUN6_UNDPI (50S ribosomal protein L19, chloroplastic n=25 Tax=Laminariales TaxID=2886 RepID=A0A0R6LUN6_UNDPI)
HSP 1 Score: 169 bits (429), Expect = 3.010e-52
Identity = 83/121 (68.60%), Postives = 106/121 (87.60%), Query Frame = 1
Query: 1 TFMNN-QFIESVEKIYIKKNLKKLFVGDTVKVGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRRSKLYYLRNIIGKAGRLKQRVKKK 360
TF+N+ + I+SVE ++IKKNL K+FVGDTVK+GVF++EGNKER+Q+Y+GIIL K+ S IN TISVRKVFQGIG+ER FL++SPK SIE++KS+RVRRSKLYYLR+I+GK RLKQR + K
Sbjct: 8 TFLNDKELIDSVESVHIKKNLSKIFVGDTVKIGVFIKEGNKERIQYYQGIILGKNNSGINLTISVRKVFQGIGVERNFLIHSPKFESIEVIKSSRVRRSKLYYLRSIVGKGSRLKQRFRTK 128
BLAST of mRNA_E-siliculosus-1a_F_contig10213.201.1 vs. uniprot
Match:
A0A8F0JYX3_9PHAE (Ribosomal protein L19 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JYX3_9PHAE)
HSP 1 Score: 166 bits (420), Expect = 7.540e-51
Identity = 83/115 (72.17%), Postives = 100/115 (86.96%), Query Frame = 1
Query: 16 QFIESVEKIYIKKNLKKLFVGDTVKVGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRRSKLYYLRNIIGKAGRLKQRVKKK 360
+ ++SVE Y KKNL ++FVGDT+KVGVF++EGNKERVQ+Y+GIIL K+ S IN TISVRKVFQGIG+ER FLV+SPKL SIE++KS+RVRRSKLYYLRNIIGK RLKQR + K
Sbjct: 16 KIMDSVESAYKKKNLSQIFVGDTIKVGVFIKEGNKERVQYYQGIILGKNNSGINLTISVRKVFQGIGVERKFLVHSPKLESIEVIKSSRVRRSKLYYLRNIIGKGSRLKQRFRTK 130
BLAST of mRNA_E-siliculosus-1a_F_contig10213.201.1 vs. uniprot
Match:
A0A8F0F7M0_9PHAE (Ribosomal protein L19 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7M0_9PHAE)
HSP 1 Score: 160 bits (405), Expect = 1.450e-48
Identity = 77/115 (66.96%), Postives = 99/115 (86.09%), Query Frame = 1
Query: 16 QFIESVEKIYIKKNLKKLFVGDTVKVGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRRSKLYYLRNIIGKAGRLKQRVKKK 360
+ ++ VE YIKK++ K+FVGDTVK+GVF++EGNKER+Q+Y+GIIL K+ S +N TISVRKVFQGIG+ER FL++SPK SIEI+KS+RVRRSKLYYLR+I+GK RLKQR + K
Sbjct: 16 KIMDFVESTYIKKDVSKIFVGDTVKIGVFIKEGNKERIQYYQGIILGKNNSGVNLTISVRKVFQGIGVERRFLIHSPKFESIEIIKSSRVRRSKLYYLRSIVGKGSRLKQRFRTK 130
BLAST of mRNA_E-siliculosus-1a_F_contig10213.201.1 vs. uniprot
Match:
A0A141BSB2_9PHAE (50S ribosomal protein L19, chloroplastic n=1 Tax=Sargassum horneri TaxID=74089 RepID=A0A141BSB2_9PHAE)
HSP 1 Score: 149 bits (377), Expect = 3.000e-44
Identity = 77/111 (69.37%), Postives = 92/111 (82.88%), Query Frame = 1
Query: 31 VEKIYIKKNLKKLFVGDTVKVGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRRSKLYYLRNIIG-KAGRLKQRVKKK 360
VE+ YIKKN+ K+FVGDTVK+GV ++EGNKER+Q+Y+GIILAK+ S IN TISVRK+FQGIGIER FL++SPK S+EI+KSARVRRSKLYYLR K RLKQR K
Sbjct: 24 VEQTYIKKNIPKVFVGDTVKIGVLIKEGNKERIQYYQGIILAKTNSGINLTISVRKIFQGIGIERKFLIHSPKFESVEIIKSARVRRSKLYYLRKTTTTKGSRLKQRFNTK 134
BLAST of mRNA_E-siliculosus-1a_F_contig10213.201.1 vs. uniprot
Match:
A0A8F0FAK4_9PHAE (Ribosomal protein L19 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAK4_9PHAE)
HSP 1 Score: 149 bits (375), Expect = 5.330e-44
Identity = 73/117 (62.39%), Postives = 94/117 (80.34%), Query Frame = 1
Query: 10 NNQFIESVEKIYIKKNLKKLFVGDTVKVGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRRSKLYYLRNIIGKAGRLKQRVKKK 360
+ + I VE+ KK++ K+FVGDTVK+G+ ++EGNKER+Q+Y+GIIL K S IN ISVRKVFQGIG+ER FL++SPK SI ++KS+RVRRSKLYYLRNIIGK RLK+R + K
Sbjct: 14 SEKIINLVEEAQKKKDIPKIFVGDTVKIGILIKEGNKERIQYYQGIILGKKNSGINLMISVRKVFQGIGVERNFLIHSPKFESITVIKSSRVRRSKLYYLRNIIGKKSRLKERFRNK 130
BLAST of mRNA_E-siliculosus-1a_F_contig10213.201.1 vs. uniprot
Match:
A0A8F5PLI7_9STRA (50S ribosomal protein L19, chloroplastic n=4 Tax=Chaetoceros TaxID=49237 RepID=A0A8F5PLI7_9STRA)
HSP 1 Score: 146 bits (369), Expect = 3.210e-43
Identity = 74/113 (65.49%), Postives = 94/113 (83.19%), Query Frame = 1
Query: 16 QFIESVEKIYIKKNLKKLFVGDTVKVGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRRSKLYYLRNIIGKAGRLKQRVK 354
Q IE++ K ++KK+L K+ +GD+VK+GV + EGNKERVQFYEG I+AK S IN TI+VRKV QGIGIER FL++SPK+ SIE+L+S++VRRSKLYYLRN+ GKA RLKQ K
Sbjct: 8 QTIENLHKHFLKKDLPKISIGDSVKIGVKIIEGNKERVQFYEGTIIAKKNSSINTTITVRKVLQGIGIERIFLIHSPKIDSIEVLRSSKVRRSKLYYLRNLKGKASRLKQAFK 120
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10213.201.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90 )
Total hits: 25
0 1 Expect = 7.32e-74 / Id = 96.67 Expect = 3.57e-69 / Id = 89.92 Expect = 1.07e-66 / Id = 87.39 Expect = 4.35e-63 / Id = 84.03 Expect = 3.01e-52 / Id = 68.60 Expect = 7.54e-51 / Id = 72.17 Expect = 1.45e-48 / Id = 66.96 Expect = 3.00e-44 / Id = 69.37 Expect = 5.33e-44 / Id = 62.39 Expect = 3.21e-43 / Id = 65.49 Sequence D1J767_ECTSI A0A1I9LVW4_9PHAE A0A6B7EVN0_9PHAE A0A7T8JK70_SCYLO A0A0R6LUN6_UNDPI A0A8F0JYX3_9PHAE A0A8F0F7M0_9PHAE A0A141BSB2_9PHAE A0A8F0FAK4_9PHAE A0A8F5PLI7_9STRA Pages
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Start 1 Stop 1 Cds size 357 Model size 363 Exons 1 Hectar predicted targeting category other localisation BRITE br01610,ko00000,ko00001,ko00002,ko03011 Best eggNOG OG NA|NA|NA Best tax level Eukaryota COG Functional cat. J EggNOG OGs COG0335@1,KOG1698@2759 EggNOG free text desc. structural constituent of ribosome GOs GO:0000313,GO:0000315,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0031974,GO:0032543,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904 KEGG Module M00178 KEGG Pathway ko03010,map03010 KEGG ko ko:K02884 Preferred name rpl19 Seed eggNOG ortholog 2880.D1J767 Seed ortholog evalue 2.1e-55 Seed ortholog score 221.5 Taxonomic scope Eukaryota
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927525.7887168-UTR-E-siliculosus-1a_F_contig10213:581..587 1622927525.7887168-UTR-E-siliculosus-1a_F_contig10213:581..587 Ectocarpus siliculosus Ec863f_EcPH12_90f female UTR E-siliculosus-1a_F_contig10213 582..587 + 1696318567.5584378-UTR-E-siliculosus-1a_F_contig10213:581..587 1696318567.5584378-UTR-E-siliculosus-1a_F_contig10213:581..587 Ectocarpus siliculosus Ec863f_EcPH12_90f female UTR E-siliculosus-1a_F_contig10213 582..587 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927525.8086386-CDS-E-siliculosus-1a_F_contig10213:587..944 1622927525.8086386-CDS-E-siliculosus-1a_F_contig10213:587..944 Ectocarpus siliculosus Ec863f_EcPH12_90f female CDS E-siliculosus-1a_F_contig10213 588..944 + 1696318567.578058-CDS-E-siliculosus-1a_F_contig10213:587..944 1696318567.578058-CDS-E-siliculosus-1a_F_contig10213:587..944 Ectocarpus siliculosus Ec863f_EcPH12_90f female CDS E-siliculosus-1a_F_contig10213 588..944 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10213.201.1
>prot_E-siliculosus-1a_F_contig10213.201.1 ID=prot_E-siliculosus-1a_F_contig10213.201.1|Name=mRNA_E-siliculosus-1a_F_contig10213.201.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=119bp
MNNQFIESVEKIYIKKNLKKLFVGDTVKVGVFVEEGNKERVQFYEGIILA back to top mRNA from alignment at E-siliculosus-1a_F_contig10213:582..944+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10213.201.1 ID=mRNA_E-siliculosus-1a_F_contig10213.201.1|Name=mRNA_E-siliculosus-1a_F_contig10213.201.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=363bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10213:582..944+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)ACATTT ATGAACAATCAATTTATTGAATCTGTTGAGAAAATTTATATAAA
AAAAAATTTAAAAAAATTATTTGTAGGTGACACAGTAAAAGTTGGTGTAT
TTGTTGAAGAAGGGAATAAAGAACGAGTTCAATTTTACGAAGGAATTATT
CTTGCAAAAAGTAAAAGTTGTATTAATTTTACAATATCAGTTCGGAAGGT
GTTTCAAGGTATTGGAATTGAAAGAGCCTTTTTAGTAAACTCACCTAAAT
TAGCTTCCATTGAAATTCTTAAATCAGCTCGAGTAAGGAGATCAAAATTA
TATTACTTACGTAATATCATAGGTAAAGCTGGTCGTTTAAAACAAAGGGT
TAAAAAAAAATAA back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10213:582..944+
>mRNA_E-siliculosus-1a_F_contig10213.201.1 ID=mRNA_E-siliculosus-1a_F_contig10213.201.1|Name=mRNA_E-siliculosus-1a_F_contig10213.201.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=714bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10213:582..944+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female) back to top