mRNA_E-siliculosus-1a_F_contig10213.201.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10213.201.1
Unique NamemRNA_E-siliculosus-1a_F_contig10213.201.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig10213.201.1 vs. uniprot
Match: D1J767_ECTSI (50S ribosomal protein L19, chloroplastic n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J767_ECTSI)

HSP 1 Score: 224 bits (571), Expect = 7.320e-74
Identity = 116/120 (96.67%), Postives = 120/120 (100.00%), Query Frame = 1 
Query:    1 TFMNNQFIESVEKIYIKKNLKKLFVGDTVKVGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRRSKLYYLRNIIGKAGRLKQRVKKK 360
            TFMNN+FIESVEK+YIKKNLKKLFVGDTVK+GVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVR+SKLYYLRNIIGKAGRLKQRVKKK
Sbjct:   11 TFMNNRFIESVEKVYIKKNLKKLFVGDTVKIGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRKSKLYYLRNIIGKAGRLKQRVKKK 130
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BLAST of mRNA_E-siliculosus-1a_F_contig10213.201.1 vs. uniprot
Match: A0A1I9LVW4_9PHAE (50S ribosomal protein L19, chloroplastic n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVW4_9PHAE)

HSP 1 Score: 213 bits (541), Expect = 3.570e-69
Identity = 107/119 (89.92%), Postives = 117/119 (98.32%), Query Frame = 1 
Query:    4 FMNNQFIESVEKIYIKKNLKKLFVGDTVKVGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRRSKLYYLRNIIGKAGRLKQRVKKK 360
            F+NN+FIESVEK++IKKNLKKLFVGDTVKVGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIG+ERAFLVNSPK ASIE++KS+R+RRSKLYYLRNIIGKAGRLK+R KKK
Sbjct:   20 FINNRFIESVEKVHIKKNLKKLFVGDTVKVGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGVERAFLVNSPKFASIEVIKSSRIRRSKLYYLRNIIGKAGRLKERFKKK 138
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BLAST of mRNA_E-siliculosus-1a_F_contig10213.201.1 vs. uniprot
Match: A0A6B7EVN0_9PHAE (50S ribosomal protein L19 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EVN0_9PHAE)

HSP 1 Score: 206 bits (524), Expect = 1.070e-66
Identity = 104/119 (87.39%), Postives = 115/119 (96.64%), Query Frame = 1 
Query:    4 FMNNQFIESVEKIYIKKNLKKLFVGDTVKVGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRRSKLYYLRNIIGKAGRLKQRVKKK 360
            FMNN+FI+SVEK+++KK+LKKLFVGDTVKVGVFVEEGNKERVQFYEGIILAKSKSCINFTIS+RKVFQGIG+ERAFLVNSPK ASIE+LKS+RV +SKLYYLRNIIGKAGRLKQR  KK
Sbjct:   12 FMNNRFIKSVEKVHMKKDLKKLFVGDTVKVGVFVEEGNKERVQFYEGIILAKSKSCINFTISIRKVFQGIGVERAFLVNSPKFASIEVLKSSRVSKSKLYYLRNIIGKAGRLKQRFNKK 130
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BLAST of mRNA_E-siliculosus-1a_F_contig10213.201.1 vs. uniprot
Match: A0A7T8JK70_SCYLO (50S ribosomal protein L19, chloroplastic n=5 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A7T8JK70_SCYLO)

HSP 1 Score: 197 bits (502), Expect = 4.350e-63
Identity = 100/119 (84.03%), Postives = 112/119 (94.12%), Query Frame = 1 
Query:    4 FMNNQFIESVEKIYIKKNLKKLFVGDTVKVGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRRSKLYYLRNIIGKAGRLKQRVKKK 360
            FMNN+ IESVE++++K+NLK+LFVGDTVKVG+ VEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIG+ERAFLVNSPK  SIE+LKSARV +SKLYYLRNIIGKAGRLKQ  KK+
Sbjct:   30 FMNNKLIESVEQVHMKENLKELFVGDTVKVGISVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGVERAFLVNSPKFVSIEVLKSARVSKSKLYYLRNIIGKAGRLKQSFKKR 148
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BLAST of mRNA_E-siliculosus-1a_F_contig10213.201.1 vs. uniprot
Match: A0A0R6LUN6_UNDPI (50S ribosomal protein L19, chloroplastic n=25 Tax=Laminariales TaxID=2886 RepID=A0A0R6LUN6_UNDPI)

HSP 1 Score: 169 bits (429), Expect = 3.010e-52
Identity = 83/121 (68.60%), Postives = 106/121 (87.60%), Query Frame = 1 
Query:    1 TFMNN-QFIESVEKIYIKKNLKKLFVGDTVKVGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRRSKLYYLRNIIGKAGRLKQRVKKK 360
            TF+N+ + I+SVE ++IKKNL K+FVGDTVK+GVF++EGNKER+Q+Y+GIIL K+ S IN TISVRKVFQGIG+ER FL++SPK  SIE++KS+RVRRSKLYYLR+I+GK  RLKQR + K
Sbjct:    8 TFLNDKELIDSVESVHIKKNLSKIFVGDTVKIGVFIKEGNKERIQYYQGIILGKNNSGINLTISVRKVFQGIGVERNFLIHSPKFESIEVIKSSRVRRSKLYYLRSIVGKGSRLKQRFRTK 128
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BLAST of mRNA_E-siliculosus-1a_F_contig10213.201.1 vs. uniprot
Match: A0A8F0JYX3_9PHAE (Ribosomal protein L19 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JYX3_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 7.540e-51
Identity = 83/115 (72.17%), Postives = 100/115 (86.96%), Query Frame = 1 
Query:   16 QFIESVEKIYIKKNLKKLFVGDTVKVGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRRSKLYYLRNIIGKAGRLKQRVKKK 360
            + ++SVE  Y KKNL ++FVGDT+KVGVF++EGNKERVQ+Y+GIIL K+ S IN TISVRKVFQGIG+ER FLV+SPKL SIE++KS+RVRRSKLYYLRNIIGK  RLKQR + K
Sbjct:   16 KIMDSVESAYKKKNLSQIFVGDTIKVGVFIKEGNKERVQYYQGIILGKNNSGINLTISVRKVFQGIGVERKFLVHSPKLESIEVIKSSRVRRSKLYYLRNIIGKGSRLKQRFRTK 130
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BLAST of mRNA_E-siliculosus-1a_F_contig10213.201.1 vs. uniprot
Match: A0A8F0F7M0_9PHAE (Ribosomal protein L19 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0F7M0_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 1.450e-48
Identity = 77/115 (66.96%), Postives = 99/115 (86.09%), Query Frame = 1 
Query:   16 QFIESVEKIYIKKNLKKLFVGDTVKVGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRRSKLYYLRNIIGKAGRLKQRVKKK 360
            + ++ VE  YIKK++ K+FVGDTVK+GVF++EGNKER+Q+Y+GIIL K+ S +N TISVRKVFQGIG+ER FL++SPK  SIEI+KS+RVRRSKLYYLR+I+GK  RLKQR + K
Sbjct:   16 KIMDFVESTYIKKDVSKIFVGDTVKIGVFIKEGNKERIQYYQGIILGKNNSGVNLTISVRKVFQGIGVERRFLIHSPKFESIEIIKSSRVRRSKLYYLRSIVGKGSRLKQRFRTK 130
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BLAST of mRNA_E-siliculosus-1a_F_contig10213.201.1 vs. uniprot
Match: A0A141BSB2_9PHAE (50S ribosomal protein L19, chloroplastic n=1 Tax=Sargassum horneri TaxID=74089 RepID=A0A141BSB2_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 3.000e-44
Identity = 77/111 (69.37%), Postives = 92/111 (82.88%), Query Frame = 1 
Query:   31 VEKIYIKKNLKKLFVGDTVKVGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRRSKLYYLRNIIG-KAGRLKQRVKKK 360
            VE+ YIKKN+ K+FVGDTVK+GV ++EGNKER+Q+Y+GIILAK+ S IN TISVRK+FQGIGIER FL++SPK  S+EI+KSARVRRSKLYYLR     K  RLKQR   K
Sbjct:   24 VEQTYIKKNIPKVFVGDTVKIGVLIKEGNKERIQYYQGIILAKTNSGINLTISVRKIFQGIGIERKFLIHSPKFESVEIIKSARVRRSKLYYLRKTTTTKGSRLKQRFNTK 134
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BLAST of mRNA_E-siliculosus-1a_F_contig10213.201.1 vs. uniprot
Match: A0A8F0FAK4_9PHAE (Ribosomal protein L19 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAK4_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 5.330e-44
Identity = 73/117 (62.39%), Postives = 94/117 (80.34%), Query Frame = 1 
Query:   10 NNQFIESVEKIYIKKNLKKLFVGDTVKVGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRRSKLYYLRNIIGKAGRLKQRVKKK 360
            + + I  VE+   KK++ K+FVGDTVK+G+ ++EGNKER+Q+Y+GIIL K  S IN  ISVRKVFQGIG+ER FL++SPK  SI ++KS+RVRRSKLYYLRNIIGK  RLK+R + K
Sbjct:   14 SEKIINLVEEAQKKKDIPKIFVGDTVKIGILIKEGNKERIQYYQGIILGKKNSGINLMISVRKVFQGIGVERNFLIHSPKFESITVIKSSRVRRSKLYYLRNIIGKKSRLKERFRNK 130
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BLAST of mRNA_E-siliculosus-1a_F_contig10213.201.1 vs. uniprot
Match: A0A8F5PLI7_9STRA (50S ribosomal protein L19, chloroplastic n=4 Tax=Chaetoceros TaxID=49237 RepID=A0A8F5PLI7_9STRA)

HSP 1 Score: 146 bits (369), Expect = 3.210e-43
Identity = 74/113 (65.49%), Postives = 94/113 (83.19%), Query Frame = 1 
Query:   16 QFIESVEKIYIKKNLKKLFVGDTVKVGVFVEEGNKERVQFYEGIILAKSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRRSKLYYLRNIIGKAGRLKQRVK 354
            Q IE++ K ++KK+L K+ +GD+VK+GV + EGNKERVQFYEG I+AK  S IN TI+VRKV QGIGIER FL++SPK+ SIE+L+S++VRRSKLYYLRN+ GKA RLKQ  K
Sbjct:    8 QTIENLHKHFLKKDLPKISIGDSVKIGVKIIEGNKERVQFYEGTIIAKKNSSINTTITVRKVLQGIGIERIFLIHSPKIDSIEVLRSSKVRRSKLYYLRNLKGKASRLKQAFK 120
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10213.201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J767_ECTSI7.320e-7496.6750S ribosomal protein L19, chloroplastic n=2 Tax=E... [more]
A0A1I9LVW4_9PHAE3.570e-6989.9250S ribosomal protein L19, chloroplastic n=1 Tax=P... [more]
A0A6B7EVN0_9PHAE1.070e-6687.3950S ribosomal protein L19 n=1 Tax=Cladosiphon okam... [more]
A0A7T8JK70_SCYLO4.350e-6384.0350S ribosomal protein L19, chloroplastic n=5 Tax=S... [more]
A0A0R6LUN6_UNDPI3.010e-5268.6050S ribosomal protein L19, chloroplastic n=25 Tax=... [more]
A0A8F0JYX3_9PHAE7.540e-5172.17Ribosomal protein L19 n=1 Tax=Chorda asiatica TaxI... [more]
A0A8F0F7M0_9PHAE1.450e-4866.96Ribosomal protein L19 n=2 Tax=Laminariales TaxID=2... [more]
A0A141BSB2_9PHAE3.000e-4469.3750S ribosomal protein L19, chloroplastic n=1 Tax=S... [more]
A0A8F0FAK4_9PHAE5.330e-4462.39Ribosomal protein L19 n=1 Tax=Desmarestia aculeata... [more]
A0A8F5PLI7_9STRA3.210e-4365.4950S ribosomal protein L19, chloroplastic n=4 Tax=C... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10213contigE-siliculosus-1a_F_contig10213:582..944 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size357
Model size363
Exons1
Hectar predicted targeting categoryother localisation
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.J
EggNOG OGsCOG0335@1,KOG1698@2759
EggNOG free text desc.structural constituent of ribosome
GOsGO:0000313,GO:0000315,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0031974,GO:0032543,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
KEGG ModuleM00178
KEGG Pathwayko03010,map03010
KEGG koko:K02884
Preferred namerpl19
Seed eggNOG ortholog2880.D1J767
Seed ortholog evalue2.1e-55
Seed ortholog score221.5
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927525.7887168-UTR-E-siliculosus-1a_F_contig10213:581..5871622927525.7887168-UTR-E-siliculosus-1a_F_contig10213:581..587Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10213 582..587 +
1696318567.5584378-UTR-E-siliculosus-1a_F_contig10213:581..5871696318567.5584378-UTR-E-siliculosus-1a_F_contig10213:581..587Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10213 582..587 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927525.8086386-CDS-E-siliculosus-1a_F_contig10213:587..9441622927525.8086386-CDS-E-siliculosus-1a_F_contig10213:587..944Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10213 588..944 +
1696318567.578058-CDS-E-siliculosus-1a_F_contig10213:587..9441696318567.578058-CDS-E-siliculosus-1a_F_contig10213:587..944Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10213 588..944 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10213.201.1prot_E-siliculosus-1a_F_contig10213.201.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10213 588..944 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10213.201.1

>prot_E-siliculosus-1a_F_contig10213.201.1 ID=prot_E-siliculosus-1a_F_contig10213.201.1|Name=mRNA_E-siliculosus-1a_F_contig10213.201.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=119bp
MNNQFIESVEKIYIKKNLKKLFVGDTVKVGVFVEEGNKERVQFYEGIILA
KSKSCINFTISVRKVFQGIGIERAFLVNSPKLASIEILKSARVRRSKLYY
LRNIIGKAGRLKQRVKKK*
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mRNA from alignment at E-siliculosus-1a_F_contig10213:582..944+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10213.201.1 ID=mRNA_E-siliculosus-1a_F_contig10213.201.1|Name=mRNA_E-siliculosus-1a_F_contig10213.201.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=363bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10213:582..944+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACATTTATGAACAATCAATTTATTGAATCTGTTGAGAAAATTTATATAAA
AAAAAATTTAAAAAAATTATTTGTAGGTGACACAGTAAAAGTTGGTGTAT
TTGTTGAAGAAGGGAATAAAGAACGAGTTCAATTTTACGAAGGAATTATT
CTTGCAAAAAGTAAAAGTTGTATTAATTTTACAATATCAGTTCGGAAGGT
GTTTCAAGGTATTGGAATTGAAAGAGCCTTTTTAGTAAACTCACCTAAAT
TAGCTTCCATTGAAATTCTTAAATCAGCTCGAGTAAGGAGATCAAAATTA
TATTACTTACGTAATATCATAGGTAAAGCTGGTCGTTTAAAACAAAGGGT
TAAAAAAAAATAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10213:582..944+

>mRNA_E-siliculosus-1a_F_contig10213.201.1 ID=mRNA_E-siliculosus-1a_F_contig10213.201.1|Name=mRNA_E-siliculosus-1a_F_contig10213.201.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=714bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10213:582..944+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAACAATCAATTTATTGAATCTGTTGAGAAAATTTATATAAAAAAAAA
TTTAAAAAAATTATTTGTAGGTGACACAGTAAAAGTTGGTGTATTTGTTG
AAGAAGGGAATAAAGAACGAGTTCAATTTTACGAAGGAATTATTCTTGCA
AAAAGTAAAAGTTGTATTAATTTTACAATATCAGTTCGGAAGGTGTTTCA
AGGTATTGGAATTGAAAGAGCCTTTTTAGTAAACTCACCTAAATTAGCTT
CCATTGAAATTCTTAAATCAGCTCGAGTAAGGAGATCAAAATTATATTAC
TTACGTAATATCATAGGTAAAGCTGGTCGTTTAAAACAAAGGGTTAAAAA
AAAATAAATGAACAATCAATTTATTGAATCTGTTGAGAAAATTTATATAA
AAAAAAATTTAAAAAAATTATTTGTAGGTGACACAGTAAAAGTTGGTGTA
TTTGTTGAAGAAGGGAATAAAGAACGAGTTCAATTTTACGAAGGAATTAT
TCTTGCAAAAAGTAAAAGTTGTATTAATTTTACAATATCAGTTCGGAAGG
TGTTTCAAGGTATTGGAATTGAAAGAGCCTTTTTAGTAAACTCACCTAAA
TTAGCTTCCATTGAAATTCTTAAATCAGCTCGAGTAAGGAGATCAAAATT
ATATTACTTACGTAATATCATAGGTAAAGCTGGTCGTTTAAAACAAAGGG
TTAAAAAAAAATAA
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