Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10212.200.1 vs. uniprot
Match:
D7FX56_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX56_ECTSI)
HSP 1 Score: 104 bits (259), Expect = 1.080e-24
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 1
Query: 1 MIYNPVVDKRTVTMHLPPSYRLALEMLEELASSSRRRAEQRTRGITRADLEEKWQAK 171
MIY+PV DKRTVTMHLPPSYRLALEMLEELASSSRR+AEQRTRGITRADLEEKW AK
Sbjct: 648 MIYDPVDDKRTVTMHLPPSYRLALEMLEELASSSRRKAEQRTRGITRADLEEKWHAK 704
BLAST of mRNA_E-siliculosus-1a_F_contig10212.200.1 vs. uniprot
Match:
D7FX69_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX69_ECTSI)
HSP 1 Score: 104 bits (259), Expect = 1.080e-24
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 1
Query: 1 MIYNPVVDKRTVTMHLPPSYRLALEMLEELASSSRRRAEQRTRGITRADLEEKWQAK 171
MIY+PV DKRTVTMHLPPSYRLALEMLEELASSSRR+AEQRTRGITRADLEEKW AK
Sbjct: 741 MIYDPVDDKRTVTMHLPPSYRLALEMLEELASSSRRKAEQRTRGITRADLEEKWHAK 797
BLAST of mRNA_E-siliculosus-1a_F_contig10212.200.1 vs. uniprot
Match:
A0A6H5KZA7_9PHAE (G domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZA7_9PHAE)
HSP 1 Score: 97.1 bits (240), Expect = 3.950e-22
Identity = 47/57 (82.46%), Postives = 54/57 (94.74%), Query Frame = 1
Query: 1 MIYNPVVDKRTVTMHLPPSYRLALEMLEELASSSRRRAEQRTRGITRADLEEKWQAK 171
+I+NPV DKR VTMH+PP Y++ALEMLEELASSSRR+AEQRTRGITRADLE+KWQAK
Sbjct: 300 IIFNPVDDKRAVTMHIPPGYQVALEMLEELASSSRRKAEQRTRGITRADLEQKWQAK 356
BLAST of mRNA_E-siliculosus-1a_F_contig10212.200.1 vs. uniprot
Match:
D7FJV1_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJV1_ECTSI)
HSP 1 Score: 79.0 bits (193), Expect = 9.180e-16
Identity = 42/57 (73.68%), Postives = 46/57 (80.70%), Query Frame = 1
Query: 1 MIYNPVVDKRTVTMHLPPSYRLALEMLEELASSSRRRAEQRTRGITRADLEEKWQAK 171
+IY+ D R VTM LP SYRLALEMLEELAS SR + EQ+TRGITRA LEEKWQAK
Sbjct: 577 IIYDSTDDTRVVTMRLPESYRLALEMLEELASCSRSKTEQQTRGITRAILEEKWQAK 633
BLAST of mRNA_E-siliculosus-1a_F_contig10212.200.1 vs. uniprot
Match:
A0A6H5JSC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSC0_9PHAE)
HSP 1 Score: 72.0 bits (175), Expect = 2.520e-13
Identity = 37/55 (67.27%), Postives = 41/55 (74.55%), Query Frame = 1
Query: 7 YNPVVDKRTVTMHLPPSYRLALEMLEELASSSRRRAEQRTRGITRADLEEKWQAK 171
YN R VTMHLP SYRLAL+MLEELAS SR + EQ RG+TRA LE+KWQ K
Sbjct: 289 YNSASRTRAVTMHLPESYRLALKMLEELASCSRSKTEQHIRGVTRAILEDKWQTK 343
BLAST of mRNA_E-siliculosus-1a_F_contig10212.200.1 vs. uniprot
Match:
A0A6H5KM38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM38_9PHAE)
HSP 1 Score: 66.2 bits (160), Expect = 1.170e-11
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 1
Query: 1 MIYNPVVDKRTVTMHLPPSYRLALEMLEELASSSR 105
MIYNPV DKRTVTMHLPPSY +ALEMLEELASSSR
Sbjct: 208 MIYNPVDDKRTVTMHLPPSYHVALEMLEELASSSR 242
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10212.200.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90 )
Total hits: 6
0 1 Expect = 1.08e-24 / Id = 92.98 Expect = 1.08e-24 / Id = 92.98 Expect = 3.95e-22 / Id = 82.46 Expect = 9.18e-16 / Id = 73.68 Expect = 2.52e-13 / Id = 67.27 Expect = 1.17e-11 / Id = 91.43 Sequence D7FX56_ECTSI D7FX69_ECTSI A0A6H5KZA7_9PHAE D7FJV1_ECTSI A0A6H5JSC0_9PHAE A0A6H5KM38_9PHAE back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Start 1 Stop 0 Cds size 171 Model size 172 Exons 2 Hectar predicted targeting category no signal peptide or anchor BRITE ko00000,ko00001,ko01000 Best eggNOG OG NA|NA|NA Best tax level Eukaryota CAZy GH1 EC 3.2.1.21 EggNOG OGs 2CYK8@1,2S4YE@2759 GOs GO:0000003,GO:0003002,GO:0003006,GO:0003674,GO:0004857,GO:0007275,GO:0007389,GO:0008150,GO:0009791,GO:0009908,GO:0022414,GO:0030234,GO:0032501,GO:0032502,GO:0043086,GO:0044092,GO:0048367,GO:0048608,GO:0048731,GO:0048832,GO:0048833,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0061458,GO:0065007,GO:0065009,GO:0090567,GO:0098772 KEGG Pathway ko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110 KEGG Reaction R00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040 KEGG ko ko:K01188 KEGG rclass RC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248 Seed eggNOG ortholog 2880.D7FX56 Seed ortholog evalue 2.4e-20 Seed ortholog score 104.0 Taxonomic scope Eukaryota
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10212.200.1
>prot_E-siliculosus-1a_F_contig10212.200.1 ID=prot_E-siliculosus-1a_F_contig10212.200.1|Name=mRNA_E-siliculosus-1a_F_contig10212.200.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=57bp
MIYNPVVDKRTVTMHLPPSYRLALEMLEELASSSRRRAEQRTRGITRADL back to top mRNA from alignment at E-siliculosus-1a_F_contig10212:1436..1903+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10212.200.1 ID=mRNA_E-siliculosus-1a_F_contig10212.200.1|Name=mRNA_E-siliculosus-1a_F_contig10212.200.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=468bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10212:1436..1903+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)ATGATATACAACCCTGTCGTTGACAAGAGGACTGTTACCATGCATCTTCC
GCCGAGCTACCGACTCGCTCTTGAGATGCTGGAGGAGCTGGCCTCTTCCA
GTAG GTAAGACCAAAGATGTCATGTATTTGTCGCCAAGTCATGCAGTCCC
AATATGTCGATATGCACGTGACCGGCTTAAGGCGATGTACGTTCGTGTTG
GCAGTGTGTTTTGTCCACATGGAGCAATAGAGTTGCTGTGCCCGCTCATG
CATTTCTGGATGGTGTACCTTACAAACCTTTGCTTGGCAGCATTTCAAGC
ATTGCGCCACGATTCTGCGTGTGTGCGTTTGTTATCATGTTGTGGTTGGG
GATGCATGATGGAAATTTCACCTCCTCTTGATCGGACCCATGCAATTTTA
GGCGCAGGGCCGAACAACGAACCCGGGGCATCACAAGAGCGGATTTGGAG
GAAAAGTGGCAAGCCAAG back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10212:1436..1903+
>mRNA_E-siliculosus-1a_F_contig10212.200.1 ID=mRNA_E-siliculosus-1a_F_contig10212.200.1|Name=mRNA_E-siliculosus-1a_F_contig10212.200.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=342bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10212:1436..1903+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female) back to top