mRNA_E-siliculosus-1a_F_contig10212.200.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10212.200.1
Unique NamemRNA_E-siliculosus-1a_F_contig10212.200.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig10212.200.1 vs. uniprot
Match: D7FX56_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX56_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 1.080e-24
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 1 
Query:    1 MIYNPVVDKRTVTMHLPPSYRLALEMLEELASSSRRRAEQRTRGITRADLEEKWQAK 171
            MIY+PV DKRTVTMHLPPSYRLALEMLEELASSSRR+AEQRTRGITRADLEEKW AK
Sbjct:  648 MIYDPVDDKRTVTMHLPPSYRLALEMLEELASSSRRKAEQRTRGITRADLEEKWHAK 704
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BLAST of mRNA_E-siliculosus-1a_F_contig10212.200.1 vs. uniprot
Match: D7FX69_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX69_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 1.080e-24
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 1 
Query:    1 MIYNPVVDKRTVTMHLPPSYRLALEMLEELASSSRRRAEQRTRGITRADLEEKWQAK 171
            MIY+PV DKRTVTMHLPPSYRLALEMLEELASSSRR+AEQRTRGITRADLEEKW AK
Sbjct:  741 MIYDPVDDKRTVTMHLPPSYRLALEMLEELASSSRRKAEQRTRGITRADLEEKWHAK 797
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BLAST of mRNA_E-siliculosus-1a_F_contig10212.200.1 vs. uniprot
Match: A0A6H5KZA7_9PHAE (G domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZA7_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 3.950e-22
Identity = 47/57 (82.46%), Postives = 54/57 (94.74%), Query Frame = 1 
Query:    1 MIYNPVVDKRTVTMHLPPSYRLALEMLEELASSSRRRAEQRTRGITRADLEEKWQAK 171
            +I+NPV DKR VTMH+PP Y++ALEMLEELASSSRR+AEQRTRGITRADLE+KWQAK
Sbjct:  300 IIFNPVDDKRAVTMHIPPGYQVALEMLEELASSSRRKAEQRTRGITRADLEQKWQAK 356
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BLAST of mRNA_E-siliculosus-1a_F_contig10212.200.1 vs. uniprot
Match: D7FJV1_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJV1_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 9.180e-16
Identity = 42/57 (73.68%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    1 MIYNPVVDKRTVTMHLPPSYRLALEMLEELASSSRRRAEQRTRGITRADLEEKWQAK 171
            +IY+   D R VTM LP SYRLALEMLEELAS SR + EQ+TRGITRA LEEKWQAK
Sbjct:  577 IIYDSTDDTRVVTMRLPESYRLALEMLEELASCSRSKTEQQTRGITRAILEEKWQAK 633
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BLAST of mRNA_E-siliculosus-1a_F_contig10212.200.1 vs. uniprot
Match: A0A6H5JSC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSC0_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 2.520e-13
Identity = 37/55 (67.27%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:    7 YNPVVDKRTVTMHLPPSYRLALEMLEELASSSRRRAEQRTRGITRADLEEKWQAK 171
            YN     R VTMHLP SYRLAL+MLEELAS SR + EQ  RG+TRA LE+KWQ K
Sbjct:  289 YNSASRTRAVTMHLPESYRLALKMLEELASCSRSKTEQHIRGVTRAILEDKWQTK 343
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BLAST of mRNA_E-siliculosus-1a_F_contig10212.200.1 vs. uniprot
Match: A0A6H5KM38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM38_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.170e-11
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:    1 MIYNPVVDKRTVTMHLPPSYRLALEMLEELASSSR 105
            MIYNPV DKRTVTMHLPPSY +ALEMLEELASSSR
Sbjct:  208 MIYNPVDDKRTVTMHLPPSYHVALEMLEELASSSR 242
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10212.200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FX56_ECTSI1.080e-2492.98LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D7FX69_ECTSI1.080e-2492.98LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5KZA7_9PHAE3.950e-2282.46G domain-containing protein n=1 Tax=Ectocarpus sp.... [more]
D7FJV1_ECTSI9.180e-1673.68LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5JSC0_9PHAE2.520e-1367.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KM38_9PHAE1.170e-1191.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10212contigE-siliculosus-1a_F_contig10212:1436..1903 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size171
Model size172
Exons2
Hectar predicted targeting categoryno signal peptide or anchor
BRITEko00000,ko00001,ko01000
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
CAZyGH1
EC3.2.1.21
EggNOG OGs2CYK8@1,2S4YE@2759
GOsGO:0000003,GO:0003002,GO:0003006,GO:0003674,GO:0004857,GO:0007275,GO:0007389,GO:0008150,GO:0009791,GO:0009908,GO:0022414,GO:0030234,GO:0032501,GO:0032502,GO:0043086,GO:0044092,GO:0048367,GO:0048608,GO:0048731,GO:0048832,GO:0048833,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0061458,GO:0065007,GO:0065009,GO:0090567,GO:0098772
KEGG Pathwayko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110
KEGG ReactionR00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040
KEGG koko:K01188
KEGG rclassRC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248
Seed eggNOG ortholog2880.D7FX56
Seed ortholog evalue2.4e-20
Seed ortholog score104.0
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927525.7449605-CDS-E-siliculosus-1a_F_contig10212:1435..15391622927525.7449605-CDS-E-siliculosus-1a_F_contig10212:1435..1539Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10212 1436..1539 +
1696318567.52923-CDS-E-siliculosus-1a_F_contig10212:1435..15391696318567.52923-CDS-E-siliculosus-1a_F_contig10212:1435..1539Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10212 1436..1539 +
1622927525.7565193-CDS-E-siliculosus-1a_F_contig10212:1836..19031622927525.7565193-CDS-E-siliculosus-1a_F_contig10212:1836..1903Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10212 1837..1903 +
1696318567.5436165-CDS-E-siliculosus-1a_F_contig10212:1836..19031696318567.5436165-CDS-E-siliculosus-1a_F_contig10212:1836..1903Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10212 1837..1903 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10212.200.1prot_E-siliculosus-1a_F_contig10212.200.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10212 1436..1903 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10212.200.1

>prot_E-siliculosus-1a_F_contig10212.200.1 ID=prot_E-siliculosus-1a_F_contig10212.200.1|Name=mRNA_E-siliculosus-1a_F_contig10212.200.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=57bp
MIYNPVVDKRTVTMHLPPSYRLALEMLEELASSSRRRAEQRTRGITRADL
EEKWQAK
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mRNA from alignment at E-siliculosus-1a_F_contig10212:1436..1903+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10212.200.1 ID=mRNA_E-siliculosus-1a_F_contig10212.200.1|Name=mRNA_E-siliculosus-1a_F_contig10212.200.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=468bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10212:1436..1903+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGATATACAACCCTGTCGTTGACAAGAGGACTGTTACCATGCATCTTCC
GCCGAGCTACCGACTCGCTCTTGAGATGCTGGAGGAGCTGGCCTCTTCCA
GTAGGTAAGACCAAAGATGTCATGTATTTGTCGCCAAGTCATGCAGTCCC
AATATGTCGATATGCACGTGACCGGCTTAAGGCGATGTACGTTCGTGTTG
GCAGTGTGTTTTGTCCACATGGAGCAATAGAGTTGCTGTGCCCGCTCATG
CATTTCTGGATGGTGTACCTTACAAACCTTTGCTTGGCAGCATTTCAAGC
ATTGCGCCACGATTCTGCGTGTGTGCGTTTGTTATCATGTTGTGGTTGGG
GATGCATGATGGAAATTTCACCTCCTCTTGATCGGACCCATGCAATTTTA
GGCGCAGGGCCGAACAACGAACCCGGGGCATCACAAGAGCGGATTTGGAG
GAAAAGTGGCAAGCCAAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10212:1436..1903+

>mRNA_E-siliculosus-1a_F_contig10212.200.1 ID=mRNA_E-siliculosus-1a_F_contig10212.200.1|Name=mRNA_E-siliculosus-1a_F_contig10212.200.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=342bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10212:1436..1903+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGATATACAACCCTGTCGTTGACAAGAGGACTGTTACCATGCATCTTCC
GCCGAGCTACCGACTCGCTCTTGAGATGCTGGAGGAGCTGGCCTCTTCCA
GTAGATGATATACAACCCTGTCGTTGACAAGAGGACTGTTACCATGCATC
TTCCGCCGAGCTACCGACTCGCTCTTGAGATGCTGGAGGAGCTGGCCTCT
TCCAGTAGGCGCAGGGCCGAACAACGAACCCGGGGCATCACAAGAGCGGA
TTTGGAGGAAAAGTGGCAAGCCAAGGCGCAGGGCCGAACAACGAACCCGG
GGCATCACAAGAGCGGATTTGGAGGAAAAGTGGCAAGCCAAG
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