mRNA_E-siliculosus-1a_F_contig1020.196.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1020.196.1
Unique NamemRNA_E-siliculosus-1a_F_contig1020.196.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1020.196.1 vs. uniprot
Match: D8LQ91_ECTSI (Lipase_3 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ91_ECTSI)

HSP 1 Score: 679 bits (1753), Expect = 3.640e-240
Identity = 372/425 (87.53%), Postives = 376/425 (88.47%), Query Frame = 1 
Query:    1 GHSLGAGTAILLKILLERNATEALMRGFRLAKDKTAAKTARLDVGRPVRVECYAFAPPPVFSVPGATWMRDVYSFVNG---------------------ADCVPTMSLGSLYSLCRTIQHVDKLPLDVYKRAEFVLDSRVRVQQSEQGLGAAGNEDGRRKIASDILGLREHPSLAFLAGDAYDISDDEYDXXXXXXXXXXXXXXXXXXXXXXXXXXATEENEDSTSIGSYLSAIRAQVVRSTISKFGEEWARFTQDVGEATESLLAAVNTAGSSAESLYKDVSRVTDGVRSMSSDEVALTLLLLKQLAAGGGPSPDEMLPMVERCEREGVRPQGGKRRSSDTMTVGDLIIPGVVFLLEGWDAGSESSAGKDGLVTVRKTSAEELGGIRLNSSMMADHAMGAYEPAILGAALKYRKRKRQADRKGH 1212
            GHSLGAGTAILLKILLERNA EAL  GFRLAKDKTAAKTARLDVGRPVRVECYAFAPPPVFSVPGATWMRDVYSFVNG                     ADCVPTMSLGSLYSLCRTIQHVDKLPLDVYKRAEFVLDSRVRVQQSEQGLGAAGNED RRKIASDILGLR HPSLAFLAGDAYDI+DDEYDXXXXXXX                    TEE EDSTSIGSYLSAIRAQVVRSTISKFG+EWARFTQDVGEATESLLAAVNTAGSSAESLYKDVSRVTDGVRSMSSDEVALTLLLLKQLA GGGPSPDEMLPMVERCEREGVRP+GGKRRSSDTMTVGDLI PGVVFLLEGWDAGSESSAGKDGLVTVRKTS+EELGGIRLNSSMMADHAMGAYEPAILGAALKYRKRKRQADRKGH
Sbjct:  276 GHSLGAGTAILLKILLERNAMEALKGGFRLAKDKTAAKTARLDVGRPVRVECYAFAPPPVFSVPGATWMRDVYSFVNGLMQHPLSRAIARRWFWRRHDRADCVPTMSLGSLYSLCRTIQHVDKLPLDVYKRAEFVLDSRVRVQQSEQGLGAAGNEDDRRKIASDILGLRAHPSLAFLAGDAYDIADDEYDXXXXXXXAGSKLPEEVIGGEQGEDQ-GTEEKEDSTSIGSYLSAIRAQVVRSTISKFGQEWARFTQDVGEATESLLAAVNTAGSSAESLYKDVSRVTDGVRSMSSDEVALTLLLLKQLATGGGPSPDEMLPMVERCEREGVRPKGGKRRSSDTMTVGDLINPGVVFLLEGWDAGSESSAGKDGLVTVRKTSSEELGGIRLNSSMMADHAMGAYEPAILGAALKYRKRKRQADRKGH 699
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BLAST of mRNA_E-siliculosus-1a_F_contig1020.196.1 vs. uniprot
Match: A0A7S1AQP4_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1AQP4_NOCSC)

HSP 1 Score: 65.1 bits (157), Expect = 7.950e-8
Identity = 43/132 (32.58%), Postives = 70/132 (53.03%), Query Frame = 1 
Query:    1 GHSLGAGTAILLKILLERNATEALMRGFRLAKDKTAAKTARLDVGRPVRVECYAFAPPPVFSVPGAT--WMR-DVYSFVNGADCVPTMSLGSLYSLCRTIQHVDKLPLDVYKRAEFVL--DSRVRVQQSEQG 381
            GHSLGAGTA+L+ ++L   +      G+          +A    GR     C+AFA PPVF  P     W   ++++FV+  D +P + L +++SLC+  + VD++ +   +RA F+   D+  RVQ  + G
Sbjct:  217 GHSLGAGTAVLVMLMLCGES------GY----------SAPFSAGR--NTTCWAFAAPPVFGPPEKIPRWTSSNIFAFVHHVDMIPRLGLAAVFSLCQAEKIVDEMDISASERASFLFNYDTSFRVQLPDHG 330
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BLAST of mRNA_E-siliculosus-1a_F_contig1020.196.1 vs. uniprot
Match: A0A553P330_TIGCA (Lipase_3 domain-containing protein n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553P330_TIGCA)

HSP 1 Score: 60.1 bits (144), Expect = 4.260e-6
Identity = 47/156 (30.13%), Postives = 73/156 (46.79%), Query Frame = 1 
Query:    1 GHSLGAGTAILLKILLERNATEALMRGFRLAKDKTAAKTARLDVGRPVRVECYAFAPPPVFSVPGATW--MRDVYS-FVNGADCVPTMSLGSLYSLCRTIQHVDKLPLDVYKRAEFVLDSRVRVQQSEQGLGAAGNEDGRRKIASDILGLREHPSL 459
            GHSLGAGTA LL +++ +             K+K   K           ++C A APPPV+         M+D  + ++N  DCVP M LGS+  L   ++ VDKL ++  KR +F +       +++Q    A  +   ++I  D     EHP +
Sbjct:  392 GHSLGAGTAELLTMVILKE------------KEKYVPKE--------TEIQCVAIAPPPVYRTDSQVPKDMKDAINIYINNQDCVPRMCLGSIAKLLAMVRAVDKLNIE--KRDQFKVFIGYDDDETKQNF--ARIQSVIQEIKQDRFPFLEHPGI 523
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1020.196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LQ91_ECTSI3.640e-24087.53Lipase_3 domain-containing protein n=2 Tax=Ectocar... [more]
A0A7S1AQP4_NOCSC7.950e-832.58Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A553P330_TIGCA4.260e-630.13Lipase_3 domain-containing protein n=1 Tax=Tigriop... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1020contigE-siliculosus-1a_F_contig1020:36613..38861 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size1215
Model size1215
Exons3
Ec32 orthologEc-26_005700.1
Ec32 ortholog descriptionFungal lipase-like domain
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGsKOG2088@1,KOG2088@2759
EggNOG free text desc.retrograde trans-synaptic signaling by lipid
Seed eggNOG ortholog2880.D8LQ91
Seed ortholog evalue5.2e-194
Seed ortholog score683.7
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1020.196.1prot_E-siliculosus-1a_F_contig1020.196.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1020 36613..38861 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927524.9444892-CDS-E-siliculosus-1a_F_contig1020:36612..374151622927524.9444892-CDS-E-siliculosus-1a_F_contig1020:36612..37415Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1020 36613..37415 -
1696318567.084579-CDS-E-siliculosus-1a_F_contig1020:36612..374151696318567.084579-CDS-E-siliculosus-1a_F_contig1020:36612..37415Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1020 36613..37415 -
1622927524.961222-CDS-E-siliculosus-1a_F_contig1020:37779..379581622927524.961222-CDS-E-siliculosus-1a_F_contig1020:37779..37958Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1020 37780..37958 -
1696318567.0983887-CDS-E-siliculosus-1a_F_contig1020:37779..379581696318567.0983887-CDS-E-siliculosus-1a_F_contig1020:37779..37958Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1020 37780..37958 -
1622927524.9760926-CDS-E-siliculosus-1a_F_contig1020:38628..388611622927524.9760926-CDS-E-siliculosus-1a_F_contig1020:38628..38861Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1020 38629..38861 -
1696318567.1060488-CDS-E-siliculosus-1a_F_contig1020:38628..388611696318567.1060488-CDS-E-siliculosus-1a_F_contig1020:38628..38861Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1020 38629..38861 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1020.196.1

>prot_E-siliculosus-1a_F_contig1020.196.1 ID=prot_E-siliculosus-1a_F_contig1020.196.1|Name=mRNA_E-siliculosus-1a_F_contig1020.196.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=405bp
GHSLGAGTAILLKILLERNATEALMRGFRLAKDKTAAKTARLDVGRPVRV
ECYAFAPPPVFSVPGATWMRDVYSFVNGADCVPTMSLGSLYSLCRTIQHV
DKLPLDVYKRAEFVLDSRVRVQQSEQGLGAAGNEDGRRKIASDILGLREH
PSLAFLAGDAYDISDDEYDDDDDEEEQRRSKLPEEVIGGEQEEDQATEEN
EDSTSIGSYLSAIRAQVVRSTISKFGEEWARFTQDVGEATESLLAAVNTA
GSSAESLYKDVSRVTDGVRSMSSDEVALTLLLLKQLAAGGGPSPDEMLPM
VERCEREGVRPQGGKRRSSDTMTVGDLIIPGVVFLLEGWDAGSESSAGKD
GLVTVRKTSAEELGGIRLNSSMMADHAMGAYEPAILGAALKYRKRKRQAD
RKGH*
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mRNA from alignment at E-siliculosus-1a_F_contig1020:36613..38861-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1020.196.1 ID=mRNA_E-siliculosus-1a_F_contig1020.196.1|Name=mRNA_E-siliculosus-1a_F_contig1020.196.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2249bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1020:36613..38861- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGGCACAGTCTGGGAGCGGGCACGGCGATCTTGTTGAAGATTCTTCTGGA
GCGAAACGCGACGGAGGCGTTGATGAGAGGCTTCAGACTCGCGAAAGACA
AGACGGCGGCGAAAACGGCAAGGCTCGACGTCGGCCGCCCGGTGCGCGTG
GAGTGCTACGCCTTCGCGCCGCCGCCGGTGTTCTCGGTGCCTGGGGCAAC
ATGGATGCGGGACGTGTACTCCTTCGTCAACGGGTGAGCCAAAGTGGTAA
AGTCTTGCATTGCTTTCACGACACGCACTCCCTTGGGGGGGCCAAGTAGG
GAAGGGCGAAAAAATCGCGGCCTACACGTGGCTTGCACGAGGGGCAGCCA
GTCCATCCCCCAGGTTGTGTCCTCCACCCCCGAAACGATTGATTTTGTAT
ACCACCTGGTGGTTTTTCGCCCCAGCAGTGATTTGGTTGGATCTATGTTT
TGTCGCACTAGCAGGAGATCAGAGACGGAGTGCGTTCGAGTAGGGGCTTA
CGGCAAGCATGTCGTCGGTCGTGCTTGCGACGTGCTCTTTTTGTGCGCAA
ACCGGACCCGCGGAGGTCAAACGACAGCGATGTCTTATTTGTTGCTGATG
CCGGTTGCTATAGCAACCCTTGAGCAGCGCTAGCGAGAGTCACAACTTAT
GGTGGACAATGTTCGTCACGAGAATGGCTGCCGTCAGCGGTCTGGCCGTT
TGTTTGGCAGTTTCGAATTTTTTCACGCAACCCTGTGTATAGGCCATGGC
CCATACCATGTTCGAATCGCATGGGAATGTTAAGACCATCAAAGTTGCTT
TCTCTGATGACCCCTCCTCCAAGCGAAACACATCTGTCAGCTTGATGCAA
CACCCCCTTTCCCGTGCGATTGCACGTCGGTGGTTTTGGCGGCGTCACGA
TAGGGCTGATTGCGTTCCAACCATGAGCCTGGGATCGCTTTACAGCTTGT
GCCGAACGATCCAACACGTCGACAAGCTCCCGCTGGACGTCTACAAGCGG
GCTGAGTTCGTGCTGGACTCTCGGGTGCGCGTTCAGCAGAGCGAGCAAGG
GCTCGGGGCGGCGGGGAACGAGGATGGCAGACGTGAGCGAGCAACGACTC
GTTTTTTTGTTTTGTCACTTCGAAAGTTGTTGGTGTTTCGGTTTCCGTCC
ACCAAGAACACCCTGCCATTCGCATTTGACTCGCTGCTGTGTGTGCCCAG
ATGAGAACAGGCGGTCACATATTTGATGCGGGAGGGTAGAGACAGCAATG
TGCGACGAAGGATGCTTGCAGTCTATAGGACGAAATCTCATGCGGGTCTG
TGCACACTTATTTACACCTGTCAAACGCCTTCGAGGGTGACATAGAGTTG
ACGAAGGACGATCACGTATCACTCTCATGGCACCCTGTGCTAACTGCTGC
CGTGATTCCCTCCCCACGCGAAACCCTACCGCCGGACGGGAAACAGGCAA
GATCGCAAGCGACATCCTGGGACTGCGCGAGCACCCTTCCCTCGCGTTCC
TCGCTGGCGACGCTTACGACATCTCCGACGATGAGTACGATGATGATGAC
GACGAAGAGGAACAAAGAAGAAGCAAGCTCCCTGAGGAGGTCATTGGCGG
CGAACAAGAGGAGGACCAAGCGACGGAAGAGAACGAAGACAGCACGAGCA
TCGGCAGCTACCTCAGCGCCATCAGGGCGCAAGTCGTTCGGAGCACGATC
TCCAAGTTCGGGGAGGAGTGGGCGAGGTTCACGCAGGACGTGGGGGAGGC
CACCGAGAGCCTGCTCGCCGCCGTAAACACGGCGGGATCCTCGGCGGAAA
GCCTCTACAAGGACGTCAGCCGCGTCACGGACGGCGTACGCAGCATGTCG
TCCGACGAGGTCGCCCTGACTCTCTTGCTCCTCAAGCAGCTAGCGGCGGG
GGGTGGACCCTCCCCGGATGAGATGCTCCCCATGGTCGAGAGATGCGAAC
GGGAAGGGGTTAGGCCGCAAGGGGGCAAGCGCCGTTCCTCCGACACGATG
ACGGTCGGAGATCTGATCATCCCGGGCGTCGTGTTCTTGTTGGAAGGGTG
GGATGCGGGAAGCGAGTCTTCGGCCGGAAAGGACGGCTTGGTGACGGTGC
GGAAGACGAGCGCGGAAGAGCTGGGAGGCATCCGCCTCAACAGCAGCATG
ATGGCCGACCATGCCATGGGTGCCTACGAACCCGCAATTCTCGGAGCGGC
GCTGAAATACCGGAAACGAAAGCGCCAAGCGGACAGGAAGGGGCATTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1020:36613..38861-

>mRNA_E-siliculosus-1a_F_contig1020.196.1 ID=mRNA_E-siliculosus-1a_F_contig1020.196.1|Name=mRNA_E-siliculosus-1a_F_contig1020.196.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2430bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1020:36613..38861- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGGCACAGTCTGGGAGCGGGCACGGCGATCTTGTTGAAGATTCTTCTGGA
GCGAAACGCGACGGAGGCGTTGATGAGAGGCTTCAGACTCGCGAAAGACA
AGACGGCGGCGAAAACGGCAAGGCTCGACGTCGGCCGCCCGGTGCGCGTG
GAGTGCTACGCCTTCGCGCCGCCGCCGGTGTTCTCGGTGCCTGGGGCAAC
ATGGATGCGGGACGTGTACTCCTTCGTCAACGGGGGCACAGTCTGGGAGC
GGGCACGGCGATCTTGTTGAAGATTCTTCTGGAGCGAAACGCGACGGAGG
CGTTGATGAGAGGCTTCAGACTCGCGAAAGACAAGACGGCGGCGAAAACG
GCAAGGCTCGACGTCGGCCGCCCGGTGCGCGTGGAGTGCTACGCCTTCGC
GCCGCCGCCGGTGTTCTCGGTGCCTGGGGCAACATGGATGCGGGACGTGT
ACTCCTTCGTCAACGGGGCTGATTGCGTTCCAACCATGAGCCTGGGATCG
CTTTACAGCTTGTGCCGAACGATCCAACACGTCGACAAGCTCCCGCTGGA
CGTCTACAAGCGGGCTGAGTTCGTGCTGGACTCTCGGGTGCGCGTTCAGC
AGAGCGAGCAAGGGCTCGGGGCGGCGGGGAACGAGGATGGCAGACGGCTG
ATTGCGTTCCAACCATGAGCCTGGGATCGCTTTACAGCTTGTGCCGAACG
ATCCAACACGTCGACAAGCTCCCGCTGGACGTCTACAAGCGGGCTGAGTT
CGTGCTGGACTCTCGGGTGCGCGTTCAGCAGAGCGAGCAAGGGCTCGGGG
CGGCGGGGAACGAGGATGGCAGACGCAAGATCGCAAGCGACATCCTGGGA
CTGCGCGAGCACCCTTCCCTCGCGTTCCTCGCTGGCGACGCTTACGACAT
CTCCGACGATGAGTACGATGATGATGACGACGAAGAGGAACAAAGAAGAA
GCAAGCTCCCTGAGGAGGTCATTGGCGGCGAACAAGAGGAGGACCAAGCG
ACGGAAGAGAACGAAGACAGCACGAGCATCGGCAGCTACCTCAGCGCCAT
CAGGGCGCAAGTCGTTCGGAGCACGATCTCCAAGTTCGGGGAGGAGTGGG
CGAGGTTCACGCAGGACGTGGGGGAGGCCACCGAGAGCCTGCTCGCCGCC
GTAAACACGGCGGGATCCTCGGCGGAAAGCCTCTACAAGGACGTCAGCCG
CGTCACGGACGGCGTACGCAGCATGTCGTCCGACGAGGTCGCCCTGACTC
TCTTGCTCCTCAAGCAGCTAGCGGCGGGGGGTGGACCCTCCCCGGATGAG
ATGCTCCCCATGGTCGAGAGATGCGAACGGGAAGGGGTTAGGCCGCAAGG
GGGCAAGCGCCGTTCCTCCGACACGATGACGGTCGGAGATCTGATCATCC
CGGGCGTCGTGTTCTTGTTGGAAGGGTGGGATGCGGGAAGCGAGTCTTCG
GCCGGAAAGGACGGCTTGGTGACGGTGCGGAAGACGAGCGCGGAAGAGCT
GGGAGGCATCCGCCTCAACAGCAGCATGATGGCCGACCATGCCATGGGTG
CCTACGAACCCGCAATTCTCGGAGCGGCGCTGAAATACCGGAAACGAAAG
CGCCAAGCGGACAGGAAGGGGCATTGAGCAAGATCGCAAGCGACATCCTG
GGACTGCGCGAGCACCCTTCCCTCGCGTTCCTCGCTGGCGACGCTTACGA
CATCTCCGACGATGAGTACGATGATGATGACGACGAAGAGGAACAAAGAA
GAAGCAAGCTCCCTGAGGAGGTCATTGGCGGCGAACAAGAGGAGGACCAA
GCGACGGAAGAGAACGAAGACAGCACGAGCATCGGCAGCTACCTCAGCGC
CATCAGGGCGCAAGTCGTTCGGAGCACGATCTCCAAGTTCGGGGAGGAGT
GGGCGAGGTTCACGCAGGACGTGGGGGAGGCCACCGAGAGCCTGCTCGCC
GCCGTAAACACGGCGGGATCCTCGGCGGAAAGCCTCTACAAGGACGTCAG
CCGCGTCACGGACGGCGTACGCAGCATGTCGTCCGACGAGGTCGCCCTGA
CTCTCTTGCTCCTCAAGCAGCTAGCGGCGGGGGGTGGACCCTCCCCGGAT
GAGATGCTCCCCATGGTCGAGAGATGCGAACGGGAAGGGGTTAGGCCGCA
AGGGGGCAAGCGCCGTTCCTCCGACACGATGACGGTCGGAGATCTGATCA
TCCCGGGCGTCGTGTTCTTGTTGGAAGGGTGGGATGCGGGAAGCGAGTCT
TCGGCCGGAAAGGACGGCTTGGTGACGGTGCGGAAGACGAGCGCGGAAGA
GCTGGGAGGCATCCGCCTCAACAGCAGCATGATGGCCGACCATGCCATGG
GTGCCTACGAACCCGCAATTCTCGGAGCGGCGCTGAAATACCGGAAACGA
AAGCGCCAAGCGGACAGGAAGGGGCATTGA
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