mRNA_E-siliculosus-1a_F_contig102.188.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig102.188.1
Unique NamemRNA_E-siliculosus-1a_F_contig102.188.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig102.188.1 vs. uniprot
Match: D7FZ51_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ51_ECTSI)

HSP 1 Score: 556 bits (1434), Expect = 3.130e-194
Identity = 356/448 (79.46%), Postives = 364/448 (81.25%), Query Frame = 1
Query:  115 MHRHKLPDNWQEDTRFDGPEHWGIEKRWKSLFPKTGFKTKSGGGI-DSSRDKDGGRSRAKGTMNAAVDMTPEGDDDTVTCSLQSGGDTDHFANFKQASRAARRTVPETAPEDPEEEMPLPSYRRPNAKTTATSGSSINTSSIGKAHLDEDEEPTTGQRRWRIHPRSTEPASSSRAGSRARDSVLLPSSSEXXXXXXFDESEANITGHERNNSRSPIPRPREQKNGGVADESPPYPLPPHSNKKGKGSRCSPGSGAAAFPYGDDSPSRQRHEEEIESSGSESCGGLSNSEFDGSEGEGRKPSXXXXXXXXXXXXXXXXXXXXGEGTRRTNGRGTK-GKGRVVREGGRRRKGSSSHSRMGSHTSSSPIPGSAQGARARSAPSGSKKARKVVRAQGNEQGWIAKGGGSXXXXXXXGRARDPVLSFQGSQVSMRKNNERSLTQSKLNFPVVL 1452
            M RHKLPDNWQEDTRFDGPEHWGIEKRWKSLFPKTGFKTKS GGI D+SRDKDGGRSRAKGT NA VDMT EG DDTVTCSLQSG D  HFANF Q SRAARRTVPETAPEDPEEEM +PSYRRPNAKTTATSGSSINTSSIGKA L EDEEPTTGQRRWRI PRSTEPASSSRAGSRARDSVLLPSSSEXXXXXXFDESEANITGHERNNSR                                  RCSPG    AFPYGDDSPSRQR EEEIESSGSESCGGLSNS+FDGSEGEGRKPS XXXXXXXXXXXXXXXXXXX              GKGRVVR           HSRMG++TSSSPIPGSAQGARARSAPSGSKKARKVVRAQGNE GWIAKGGGSXXXXXX GR R+PVLSFQGSQ+SMRKNNERSLTQSK+NFPVVL
Sbjct:    1 MRRHKLPDNWQEDTRFDGPEHWGIEKRWKSLFPKTGFKTKSVGGIVDTSRDKDGGRSRAKGTRNATVDMTAEGGDDTVTCSLQSGDD--HFANFNQPSRAARRTVPETAPEDPEEEMRIPSYRRPNAKTTATSGSSINTSSIGKAPLYEDEEPTTGQRRWRIQPRSTEPASSSRAGSRARDSVLLPSSSEXXXXXXFDESEANITGHERNNSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCSPGXXXXAFPYGDDSPSRQRREEEIESSGSESCGGLSNSDFDGSEGEGRKPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKGRVVRXXXXXXXXXXXHSRMGNNTSSSPIPGSAQGARARSAPSGSKKARKVVRAQGNEHGWIAKGGGSXXXXXXGGRVRNPVLSFQGSQISMRKNNERSLTQSKINFPVVL 446          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig102.188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZ51_ECTSI3.130e-19479.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig102contigE-siliculosus-1a_F_contig102:33040..36620 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1341
Model size1455
Exons3
Ec32 orthologEc-02_006300.1
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig102.188.1prot_E-siliculosus-1a_F_contig102.188.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig102 33040..36506 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927523.8608062-CDS-E-siliculosus-1a_F_contig102:33039..338481622927523.8608062-CDS-E-siliculosus-1a_F_contig102:33039..33848Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig102 33040..33848 -
1696318566.4525907-CDS-E-siliculosus-1a_F_contig102:33039..338481696318566.4525907-CDS-E-siliculosus-1a_F_contig102:33039..33848Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig102 33040..33848 -
1622927523.8785222-CDS-E-siliculosus-1a_F_contig102:34632..351461622927523.8785222-CDS-E-siliculosus-1a_F_contig102:34632..35146Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig102 34633..35146 -
1696318566.4625258-CDS-E-siliculosus-1a_F_contig102:34632..351461696318566.4625258-CDS-E-siliculosus-1a_F_contig102:34632..35146Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig102 34633..35146 -
1622927523.9000192-CDS-E-siliculosus-1a_F_contig102:36488..365061622927523.9000192-CDS-E-siliculosus-1a_F_contig102:36488..36506Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig102 36489..36506 -
1696318566.4741151-CDS-E-siliculosus-1a_F_contig102:36488..365061696318566.4741151-CDS-E-siliculosus-1a_F_contig102:36488..36506Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig102 36489..36506 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927523.918058-UTR-E-siliculosus-1a_F_contig102:36506..366201622927523.918058-UTR-E-siliculosus-1a_F_contig102:36506..36620Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig102 36507..36620 -
1696318566.4827487-UTR-E-siliculosus-1a_F_contig102:36506..366201696318566.4827487-UTR-E-siliculosus-1a_F_contig102:36506..36620Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig102 36507..36620 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig102.188.1

>prot_E-siliculosus-1a_F_contig102.188.1 ID=prot_E-siliculosus-1a_F_contig102.188.1|Name=mRNA_E-siliculosus-1a_F_contig102.188.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=447bp
MHRHKLPDNWQEDTRFDGPEHWGIEKRWKSLFPKTGFKTKSGGGIDSSRD
KDGGRSRAKGTMNAAVDMTPEGDDDTVTCSLQSGGDTDHFANFKQASRAA
RRTVPETAPEDPEEEMPLPSYRRPNAKTTATSGSSINTSSIGKAHLDEDE
EPTTGQRRWRIHPRSTEPASSSRAGSRARDSVLLPSSSEEEEEEEFDESE
ANITGHERNNSRSPIPRPREQKNGGVADESPPYPLPPHSNKKGKGSRCSP
GSGAAAFPYGDDSPSRQRHEEEIESSGSESCGGLSNSEFDGSEGEGRKPS
SSSRRLSSSSLSRRREGGGEGEGTRRTNGRGTKGKGRVVREGGRRRKGSS
SHSRMGSHTSSSPIPGSAQGARARSAPSGSKKARKVVRAQGNEQGWIAKG
GGSGGGGSSGGRARDPVLSFQGSQVSMRKNNERSLTQSKLNFPVVL*
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mRNA from alignment at E-siliculosus-1a_F_contig102:33040..36620-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig102.188.1 ID=mRNA_E-siliculosus-1a_F_contig102.188.1|Name=mRNA_E-siliculosus-1a_F_contig102.188.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3581bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig102:33040..36620- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTGTACTTGTATTTTTTCTTAAAAAGGCGGCACGAAGGCACGAACGGGTA CACCGAGCACCGGCCACCCAGACCATTCCGCCAAACATCATCTCGTGTGT GACTTGCGGACACCATGCATCGACACAAGCTGGTGAGTAGCACCAACCTT CCGTCTGTAGGTGGGCTTTGAACCGTTTCCGTTGTTGATTGGTTGATCGA GATTTCAAGCTTTAGCTGGTGGGATGTTGACAGCAGCACCAGTGTCTGAA GCTGCTGCTGCTGGTGCCGATGCGCTCGAACGCAGAGTCATGGGATACAT GAGCGTCATGACGCAGTTCAAACCCATGTATGCCATTGTGTTGTAGGTTC CCGACGGTATGGCTTTTTGTCAAGACGAGATCTCCTACCGTGATTTGTAC ACTTGTGTACTCTCTGCTGCTGCGTAGACGTTTGGGTGGATTTTCAAATT TGAAATTGGTGCCACTTGTGTCAACGCAGGACCACGCCGACAGACTTGCA GCAGTAATTATGACTACAGCAGCATCGTTGAAAACGCCATGATCGACTCT ACATGTAGATTACTCTACATTCCTCTATGGTACCTCTAGACATTGAGATC TCCGAAGCATGACCGCCGCTTCCATGCACTTTGGCGTGATGCACGCCCAA AATCTATCATAGCGCGAGGTAGGACTCGGACTGGATATTATTGCCGCTCC CTCGTGCGAATTTGCATAGTCTACCCGCCTTTTGTTCCGGAAACGATATG TGCATTCCACACGATGATAACAAGTAAGTAGATGCAAGAAGTGTAGAGTA TTTCCATGTCTGTTGGAGATGACCCGTCTTTCCTATGGTTTGCCACTTAG CTCAACCGGCTGAGGGTTCTGCACAACAAATTGCCTGTCGCATCCGAATC GTGTCTCTCAACAGCAGTATACTAGTAGAGTCAAGATATTGCCCCCACTT CCACCAGTTTACGTCTTCCTCTTCCTCTTCCTCCAACAATCCGGAATGCC CTCATTTCTTTGCCCGTGGAATCGGTGCACATCTGCTGCATGCTACGCTT GTTGCGGCCGCTAAAGAGAGAGATGGTGTGTTTATCGCGACCTAAGACTA AGATTAGGATTCGAAGGAGGACCGCCTGCTCGCCCTACCGGCAAAGCACA GGGGACTCCATGACATACTATGCAGGCAGGAGGACATGACGTGCCCCCCC CCGGTGACTCTCTACAAGTGCGGGAACATTTTTATTTGTTCTCCATCTCA CGAGGATCGAACATGATGACGTCACTGCCGGTAAATCCAACCGTCCGTTC CGTCCACGCTCCGCACGAAGACCCACTACTACTACAGTATTATGCTACAC TTCCATGGAAGGTGTTACGGGCTTCCATGGAACCTTGTACAATGCGTTAA AAAGTGTAGGTACAGCTACACAGAGGTACAATAGTCGGCCTCTCATCTGT TGCCGCCGTTCTCCTTGTCTCCAGCCCGACAATTGGCAAGAAGACACACG CTTCGACGGCCCAGAGCACTGGGGCATCGAAAAACGGTGGAAGAGCCTAT TCCCCAAGACTGGCTTCAAGACCAAGAGCGGCGGTGGTATTGACAGTAGT AGGGACAAGGATGGCGGCAGGAGTCGGGCAAAGGGGACAATGAACGCGGC GGTGGACATGACCCCCGAGGGAGACGACGACACCGTTACATGTAGCCTGC AGAGCGGCGGTGATACCGATCATTTCGCCAACTTCAAGCAGGCAAGTCGT GCGGCTCGAAGGACAGTTCCCGAGACGGCGCCAGAGGACCCCGAAGAGGA GATGCCGCTTCCTTCTTACAGGAGACCGAACGCGAAAACAACGGCAACTA GCGGCAGCAGCATCAACACAAGTAGTATCGGTAAGGCACACTTAGACGAG GACGAGGAGCCGACGACGGGGCAAAGAAGGTGGAGAATCCACCCGAGAAG CACGGAGCCAGCGTCGAGCTCCCGTGCTGGAAGTAGGGGTGAGTCGAGAG ACACGGGAAAGGTACTACTGCTGTAGTTCCGCCCGGTGGTATTCATAGCT TAGTGTGGTGATGCTTGCCATGCTTGTCATGCTTGTCTGGTATGAACGGT GGAGCGGGTCAAACGTACCGTCCCACGTGATACGTGATGCCATGGTGATA CTTACCAATAGCATGGGATTGTCTCAAACGGCTTACTCTTCGTACCCCCA GGGGCGGAGGCAACTTTCGCGTTGGCGAAGGGGTGTCGATCAAGGCGAGT TGATGAACCTCCTTCTTGTGGTAATACACAGCTGTGCACCCACGCACACA CACACGAATAGAAAACTGTGACGTTTGCCCGACGAGCAGTGAACGGTAAC GATCGGTCTTGGTAAGGTTATTTGGTGGCGTTTTGGGTGGCGAGATTCCA TGGCAAGCAATTCGCGGTACCACTCTACCGATCGAGGTGTTGGTGGAAGA AGTGGGATTGCGCGTGTTACGCGGTTGATTGTGTGTGTCTGTTCTCGGAC CCTGTTCTTTCATCACTGTACTCTCTGCACTCTCGGTACGGGAATGTCGA AACGTGCGTGCCCGGTGCGTCAACCAACCTTATCTTTTCCATGAAAGCTG CATGGCGATGTCTACCCACGACCCCCAAATTTCCGAGGTTGATCTTTTTA CCCCGCTCGCCTGCTTCCTCGCATGTGTCTCCCTATGAAACACAACCTCT CCCGCGTTTTCTTAGTTTCTTCTCCTTGCCCCCGCGATATTTCCGCCGCA TCCAAAACTCGCCTGTGCGAAGCTCGTGATTCGGTGCTTCTGCCGTCTTC TTCCGAGGAAGAGGAAGAGGAGGAGTTTGACGAAAGCGAGGCCAACATCA CGGGCCACGAACGGAACAACTCCCGTTCACCCATCCCCCGCCCCCGCGAA CAGAAAAACGGCGGGGTCGCCGATGAATCGCCCCCATACCCCCTCCCCCC ACACAGCAACAAGAAGGGGAAAGGCAGTAGGTGCTCTCCAGGGAGTGGGG CCGCAGCCTTCCCGTATGGCGACGACTCCCCCTCGAGGCAACGACACGAA GAGGAGATCGAGTCGTCTGGGTCGGAATCCTGCGGCGGCTTGTCGAACTC CGAATTTGACGGCAGCGAGGGCGAGGGTCGCAAGCCATCCTCATCCTCCC GGCGGCTGTCGTCTTCTTCTCTTTCTCGCCGTAGGGAAGGGGGCGGGGAA GGGGAAGGAACGCGGCGTACCAACGGGCGCGGGACAAAAGGGAAAGGGCG TGTCGTTCGCGAGGGTGGTCGGAGGCGAAAGGGATCGTCCAGCCACAGCA GGATGGGCAGCCACACGTCATCGAGCCCGATCCCGGGCTCCGCGCAAGGG GCGCGGGCTCGCTCGGCACCATCTGGCAGCAAGAAGGCTCGCAAGGTTGT GAGAGCCCAAGGGAACGAGCAAGGCTGGATAGCCAAGGGGGGTGGGAGCG GCGGTGGCGGTAGCAGTGGAGGGCGAGCGAGGGATCCGGTGCTTTCGTTT CAGGGTTCTCAGGTTTCGATGCGAAAGAACAACGAAAGAAGCCTGACGCA GTCCAAACTCAACTTTCCCGTCGTATTGTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig102:33040..36620-

>mRNA_E-siliculosus-1a_F_contig102.188.1 ID=mRNA_E-siliculosus-1a_F_contig102.188.1|Name=mRNA_E-siliculosus-1a_F_contig102.188.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2682bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig102:33040..36620- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCATCGACACAAGCTGATGCATCGACACAAGCTGCCCGACAATTGGCA
AGAAGACACACGCTTCGACGGCCCAGAGCACTGGGGCATCGAAAAACGGT
GGAAGAGCCTATTCCCCAAGACTGGCTTCAAGACCAAGAGCGGCGGTGGT
ATTGACAGTAGTAGGGACAAGGATGGCGGCAGGAGTCGGGCAAAGGGGAC
AATGAACGCGGCGGTGGACATGACCCCCGAGGGAGACGACGACACCGTTA
CATGTAGCCTGCAGAGCGGCGGTGATACCGATCATTTCGCCAACTTCAAG
CAGGCAAGTCGTGCGGCTCGAAGGACAGTTCCCGAGACGGCGCCAGAGGA
CCCCGAAGAGGAGATGCCGCTTCCTTCTTACAGGAGACCGAACGCGAAAA
CAACGGCAACTAGCGGCAGCAGCATCAACACAAGTAGTATCGGTAAGGCA
CACTTAGACGAGGACGAGGAGCCGACGACGGGGCAAAGAAGGTGGAGAAT
CCACCCGAGAAGCACGGAGCCAGCGTCGAGCTCCCGTGCTGGAAGTAGGG
CCCGACAATTGGCAAGAAGACACACGCTTCGACGGCCCAGAGCACTGGGG
CATCGAAAAACGGTGGAAGAGCCTATTCCCCAAGACTGGCTTCAAGACCA
AGAGCGGCGGTGGTATTGACAGTAGTAGGGACAAGGATGGCGGCAGGAGT
CGGGCAAAGGGGACAATGAACGCGGCGGTGGACATGACCCCCGAGGGAGA
CGACGACACCGTTACATGTAGCCTGCAGAGCGGCGGTGATACCGATCATT
TCGCCAACTTCAAGCAGGCAAGTCGTGCGGCTCGAAGGACAGTTCCCGAG
ACGGCGCCAGAGGACCCCGAAGAGGAGATGCCGCTTCCTTCTTACAGGAG
ACCGAACGCGAAAACAACGGCAACTAGCGGCAGCAGCATCAACACAAGTA
GTATCGGTAAGGCACACTTAGACGAGGACGAGGAGCCGACGACGGGGCAA
AGAAGGTGGAGAATCCACCCGAGAAGCACGGAGCCAGCGTCGAGCTCCCG
TGCTGGAAGTAGGGCTCGTGATTCGGTGCTTCTGCCGTCTTCTTCCGAGG
AAGAGGAAGAGGAGGAGTTTGACGAAAGCGAGGCCAACATCACGGGCCAC
GAACGGAACAACTCCCGTTCACCCATCCCCCGCCCCCGCGAACAGAAAAA
CGGCGGGGTCGCCGATGAATCGCCCCCATACCCCCTCCCCCCACACAGCA
ACAAGAAGGGGAAAGGCAGTAGGTGCTCTCCAGGGAGTGGGGCCGCAGCC
TTCCCGTATGGCGACGACTCCCCCTCGAGGCAACGACACGAAGAGGAGAT
CGAGTCGTCTGGGTCGGAATCCTGCGGCGGCTTGTCGAACTCCGAATTTG
ACGGCAGCGAGGGCGAGGGTCGCAAGCCATCCTCATCCTCCCGGCGGCTG
TCGTCTTCTTCTCTTTCTCGCCGTAGGGAAGGGGGCGGGGAAGGGGAAGG
AACGCGGCGTACCAACGGGCGCGGGACAAAAGGGAAAGGGCGTGTCGTTC
GCGAGGGTGGTCGGAGGCGAAAGGGATCGTCCAGCCACAGCAGGATGGGC
AGCCACACGTCATCGAGCCCGATCCCGGGCTCCGCGCAAGGGGCGCGGGC
TCGCTCGGCACCATCTGGCAGCAAGAAGGCTCGCAAGGTTGTGAGAGCCC
AAGGGAACGAGCAAGGCTGGATAGCCAAGGGGGGTGGGAGCGGCGGTGGC
GGTAGCAGTGGAGGGCGAGCGAGGGATCCGGTGCTTTCGTTTCAGGGTTC
TCAGGTTTCGATGCGAAAGAACAACGAAAGAAGCCTGACGCAGTCCAAAC
TCAACTTTCCCGTCGTATTGTAGCTCGTGATTCGGTGCTTCTGCCGTCTT
CTTCCGAGGAAGAGGAAGAGGAGGAGTTTGACGAAAGCGAGGCCAACATC
ACGGGCCACGAACGGAACAACTCCCGTTCACCCATCCCCCGCCCCCGCGA
ACAGAAAAACGGCGGGGTCGCCGATGAATCGCCCCCATACCCCCTCCCCC
CACACAGCAACAAGAAGGGGAAAGGCAGTAGGTGCTCTCCAGGGAGTGGG
GCCGCAGCCTTCCCGTATGGCGACGACTCCCCCTCGAGGCAACGACACGA
AGAGGAGATCGAGTCGTCTGGGTCGGAATCCTGCGGCGGCTTGTCGAACT
CCGAATTTGACGGCAGCGAGGGCGAGGGTCGCAAGCCATCCTCATCCTCC
CGGCGGCTGTCGTCTTCTTCTCTTTCTCGCCGTAGGGAAGGGGGCGGGGA
AGGGGAAGGAACGCGGCGTACCAACGGGCGCGGGACAAAAGGGAAAGGGC
GTGTCGTTCGCGAGGGTGGTCGGAGGCGAAAGGGATCGTCCAGCCACAGC
AGGATGGGCAGCCACACGTCATCGAGCCCGATCCCGGGCTCCGCGCAAGG
GGCGCGGGCTCGCTCGGCACCATCTGGCAGCAAGAAGGCTCGCAAGGTTG
TGAGAGCCCAAGGGAACGAGCAAGGCTGGATAGCCAAGGGGGGTGGGAGC
GGCGGTGGCGGTAGCAGTGGAGGGCGAGCGAGGGATCCGGTGCTTTCGTT
TCAGGGTTCTCAGGTTTCGATGCGAAAGAACAACGAAAGAAGCCTGACGC
AGTCCAAACTCAACTTTCCCGTCGTATTGTAG
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