Homology
BLAST of mRNA_E-siliculosus-1a_F_contig102.188.1 vs. uniprot
Match: D7FZ51_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ51_ECTSI) HSP 1 Score: 556 bits (1434), Expect = 3.130e-194 Identity = 356/448 (79.46%), Postives = 364/448 (81.25%), Query Frame = 1 Query: 115 MHRHKLPDNWQEDTRFDGPEHWGIEKRWKSLFPKTGFKTKSGGGI-DSSRDKDGGRSRAKGTMNAAVDMTPEGDDDTVTCSLQSGGDTDHFANFKQASRAARRTVPETAPEDPEEEMPLPSYRRPNAKTTATSGSSINTSSIGKAHLDEDEEPTTGQRRWRIHPRSTEPASSSRAGSRARDSVLLPSSSEXXXXXXFDESEANITGHERNNSRSPIPRPREQKNGGVADESPPYPLPPHSNKKGKGSRCSPGSGAAAFPYGDDSPSRQRHEEEIESSGSESCGGLSNSEFDGSEGEGRKPSXXXXXXXXXXXXXXXXXXXXGEGTRRTNGRGTK-GKGRVVREGGRRRKGSSSHSRMGSHTSSSPIPGSAQGARARSAPSGSKKARKVVRAQGNEQGWIAKGGGSXXXXXXXGRARDPVLSFQGSQVSMRKNNERSLTQSKLNFPVVL 1452
M RHKLPDNWQEDTRFDGPEHWGIEKRWKSLFPKTGFKTKS GGI D+SRDKDGGRSRAKGT NA VDMT EG DDTVTCSLQSG D HFANF Q SRAARRTVPETAPEDPEEEM +PSYRRPNAKTTATSGSSINTSSIGKA L EDEEPTTGQRRWRI PRSTEPASSSRAGSRARDSVLLPSSSEXXXXXXFDESEANITGHERNNSR RCSPG AFPYGDDSPSRQR EEEIESSGSESCGGLSNS+FDGSEGEGRKPS XXXXXXXXXXXXXXXXXXX GKGRVVR HSRMG++TSSSPIPGSAQGARARSAPSGSKKARKVVRAQGNE GWIAKGGGSXXXXXX GR R+PVLSFQGSQ+SMRKNNERSLTQSK+NFPVVL
Sbjct: 1 MRRHKLPDNWQEDTRFDGPEHWGIEKRWKSLFPKTGFKTKSVGGIVDTSRDKDGGRSRAKGTRNATVDMTAEGGDDTVTCSLQSGDD--HFANFNQPSRAARRTVPETAPEDPEEEMRIPSYRRPNAKTTATSGSSINTSSIGKAPLYEDEEPTTGQRRWRIQPRSTEPASSSRAGSRARDSVLLPSSSEXXXXXXFDESEANITGHERNNSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCSPGXXXXAFPYGDDSPSRQRREEEIESSGSESCGGLSNSDFDGSEGEGRKPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKGRVVRXXXXXXXXXXXHSRMGNNTSSSPIPGSAQGARARSAPSGSKKARKVVRAQGNEHGWIAKGGGSXXXXXXGGRVRNPVLSFQGSQISMRKNNERSLTQSKINFPVVL 446
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 1341 |
| Model size | 1455 |
| Exons | 3 |
| Ec32 ortholog | Ec-02_006300.1 |
| Ec32 ortholog description | expressed unknown protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927523.918058-UTR-E-siliculosus-1a_F_contig102:36506..36620 | 1622927523.918058-UTR-E-siliculosus-1a_F_contig102:36506..36620 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig102 36507..36620 - |
| 1696318566.4827487-UTR-E-siliculosus-1a_F_contig102:36506..36620 | 1696318566.4827487-UTR-E-siliculosus-1a_F_contig102:36506..36620 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig102 36507..36620 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig102.188.1 >prot_E-siliculosus-1a_F_contig102.188.1 ID=prot_E-siliculosus-1a_F_contig102.188.1|Name=mRNA_E-siliculosus-1a_F_contig102.188.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=447bp
MHRHKLPDNWQEDTRFDGPEHWGIEKRWKSLFPKTGFKTKSGGGIDSSRD
KDGGRSRAKGTMNAAVDMTPEGDDDTVTCSLQSGGDTDHFANFKQASRAA
RRTVPETAPEDPEEEMPLPSYRRPNAKTTATSGSSINTSSIGKAHLDEDE
EPTTGQRRWRIHPRSTEPASSSRAGSRARDSVLLPSSSEEEEEEEFDESE
ANITGHERNNSRSPIPRPREQKNGGVADESPPYPLPPHSNKKGKGSRCSP
GSGAAAFPYGDDSPSRQRHEEEIESSGSESCGGLSNSEFDGSEGEGRKPS
SSSRRLSSSSLSRRREGGGEGEGTRRTNGRGTKGKGRVVREGGRRRKGSS
SHSRMGSHTSSSPIPGSAQGARARSAPSGSKKARKVVRAQGNEQGWIAKG
GGSGGGGSSGGRARDPVLSFQGSQVSMRKNNERSLTQSKLNFPVVL* back to topmRNA from alignment at E-siliculosus-1a_F_contig102:33040..36620- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig102.188.1 ID=mRNA_E-siliculosus-1a_F_contig102.188.1|Name=mRNA_E-siliculosus-1a_F_contig102.188.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3581bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig102:33040..36620- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTGTACTTGTATTTTTTCTTAAAAAGGCGGCACGAAGGCACGAACGGGTA
CACCGAGCACCGGCCACCCAGACCATTCCGCCAAACATCATCTCGTGTGT
GACTTGCGGACACCATGCATCGACACAAGCTGGTGAGTAGCACCAACCTT
CCGTCTGTAGGTGGGCTTTGAACCGTTTCCGTTGTTGATTGGTTGATCGA
GATTTCAAGCTTTAGCTGGTGGGATGTTGACAGCAGCACCAGTGTCTGAA
GCTGCTGCTGCTGGTGCCGATGCGCTCGAACGCAGAGTCATGGGATACAT
GAGCGTCATGACGCAGTTCAAACCCATGTATGCCATTGTGTTGTAGGTTC
CCGACGGTATGGCTTTTTGTCAAGACGAGATCTCCTACCGTGATTTGTAC
ACTTGTGTACTCTCTGCTGCTGCGTAGACGTTTGGGTGGATTTTCAAATT
TGAAATTGGTGCCACTTGTGTCAACGCAGGACCACGCCGACAGACTTGCA
GCAGTAATTATGACTACAGCAGCATCGTTGAAAACGCCATGATCGACTCT
ACATGTAGATTACTCTACATTCCTCTATGGTACCTCTAGACATTGAGATC
TCCGAAGCATGACCGCCGCTTCCATGCACTTTGGCGTGATGCACGCCCAA
AATCTATCATAGCGCGAGGTAGGACTCGGACTGGATATTATTGCCGCTCC
CTCGTGCGAATTTGCATAGTCTACCCGCCTTTTGTTCCGGAAACGATATG
TGCATTCCACACGATGATAACAAGTAAGTAGATGCAAGAAGTGTAGAGTA
TTTCCATGTCTGTTGGAGATGACCCGTCTTTCCTATGGTTTGCCACTTAG
CTCAACCGGCTGAGGGTTCTGCACAACAAATTGCCTGTCGCATCCGAATC
GTGTCTCTCAACAGCAGTATACTAGTAGAGTCAAGATATTGCCCCCACTT
CCACCAGTTTACGTCTTCCTCTTCCTCTTCCTCCAACAATCCGGAATGCC
CTCATTTCTTTGCCCGTGGAATCGGTGCACATCTGCTGCATGCTACGCTT
GTTGCGGCCGCTAAAGAGAGAGATGGTGTGTTTATCGCGACCTAAGACTA
AGATTAGGATTCGAAGGAGGACCGCCTGCTCGCCCTACCGGCAAAGCACA
GGGGACTCCATGACATACTATGCAGGCAGGAGGACATGACGTGCCCCCCC
CCGGTGACTCTCTACAAGTGCGGGAACATTTTTATTTGTTCTCCATCTCA
CGAGGATCGAACATGATGACGTCACTGCCGGTAAATCCAACCGTCCGTTC
CGTCCACGCTCCGCACGAAGACCCACTACTACTACAGTATTATGCTACAC
TTCCATGGAAGGTGTTACGGGCTTCCATGGAACCTTGTACAATGCGTTAA
AAAGTGTAGGTACAGCTACACAGAGGTACAATAGTCGGCCTCTCATCTGT
TGCCGCCGTTCTCCTTGTCTCCAGCCCGACAATTGGCAAGAAGACACACG
CTTCGACGGCCCAGAGCACTGGGGCATCGAAAAACGGTGGAAGAGCCTAT
TCCCCAAGACTGGCTTCAAGACCAAGAGCGGCGGTGGTATTGACAGTAGT
AGGGACAAGGATGGCGGCAGGAGTCGGGCAAAGGGGACAATGAACGCGGC
GGTGGACATGACCCCCGAGGGAGACGACGACACCGTTACATGTAGCCTGC
AGAGCGGCGGTGATACCGATCATTTCGCCAACTTCAAGCAGGCAAGTCGT
GCGGCTCGAAGGACAGTTCCCGAGACGGCGCCAGAGGACCCCGAAGAGGA
GATGCCGCTTCCTTCTTACAGGAGACCGAACGCGAAAACAACGGCAACTA
GCGGCAGCAGCATCAACACAAGTAGTATCGGTAAGGCACACTTAGACGAG
GACGAGGAGCCGACGACGGGGCAAAGAAGGTGGAGAATCCACCCGAGAAG
CACGGAGCCAGCGTCGAGCTCCCGTGCTGGAAGTAGGGGTGAGTCGAGAG
ACACGGGAAAGGTACTACTGCTGTAGTTCCGCCCGGTGGTATTCATAGCT
TAGTGTGGTGATGCTTGCCATGCTTGTCATGCTTGTCTGGTATGAACGGT
GGAGCGGGTCAAACGTACCGTCCCACGTGATACGTGATGCCATGGTGATA
CTTACCAATAGCATGGGATTGTCTCAAACGGCTTACTCTTCGTACCCCCA
GGGGCGGAGGCAACTTTCGCGTTGGCGAAGGGGTGTCGATCAAGGCGAGT
TGATGAACCTCCTTCTTGTGGTAATACACAGCTGTGCACCCACGCACACA
CACACGAATAGAAAACTGTGACGTTTGCCCGACGAGCAGTGAACGGTAAC
GATCGGTCTTGGTAAGGTTATTTGGTGGCGTTTTGGGTGGCGAGATTCCA
TGGCAAGCAATTCGCGGTACCACTCTACCGATCGAGGTGTTGGTGGAAGA
AGTGGGATTGCGCGTGTTACGCGGTTGATTGTGTGTGTCTGTTCTCGGAC
CCTGTTCTTTCATCACTGTACTCTCTGCACTCTCGGTACGGGAATGTCGA
AACGTGCGTGCCCGGTGCGTCAACCAACCTTATCTTTTCCATGAAAGCTG
CATGGCGATGTCTACCCACGACCCCCAAATTTCCGAGGTTGATCTTTTTA
CCCCGCTCGCCTGCTTCCTCGCATGTGTCTCCCTATGAAACACAACCTCT
CCCGCGTTTTCTTAGTTTCTTCTCCTTGCCCCCGCGATATTTCCGCCGCA
TCCAAAACTCGCCTGTGCGAAGCTCGTGATTCGGTGCTTCTGCCGTCTTC
TTCCGAGGAAGAGGAAGAGGAGGAGTTTGACGAAAGCGAGGCCAACATCA
CGGGCCACGAACGGAACAACTCCCGTTCACCCATCCCCCGCCCCCGCGAA
CAGAAAAACGGCGGGGTCGCCGATGAATCGCCCCCATACCCCCTCCCCCC
ACACAGCAACAAGAAGGGGAAAGGCAGTAGGTGCTCTCCAGGGAGTGGGG
CCGCAGCCTTCCCGTATGGCGACGACTCCCCCTCGAGGCAACGACACGAA
GAGGAGATCGAGTCGTCTGGGTCGGAATCCTGCGGCGGCTTGTCGAACTC
CGAATTTGACGGCAGCGAGGGCGAGGGTCGCAAGCCATCCTCATCCTCCC
GGCGGCTGTCGTCTTCTTCTCTTTCTCGCCGTAGGGAAGGGGGCGGGGAA
GGGGAAGGAACGCGGCGTACCAACGGGCGCGGGACAAAAGGGAAAGGGCG
TGTCGTTCGCGAGGGTGGTCGGAGGCGAAAGGGATCGTCCAGCCACAGCA
GGATGGGCAGCCACACGTCATCGAGCCCGATCCCGGGCTCCGCGCAAGGG
GCGCGGGCTCGCTCGGCACCATCTGGCAGCAAGAAGGCTCGCAAGGTTGT
GAGAGCCCAAGGGAACGAGCAAGGCTGGATAGCCAAGGGGGGTGGGAGCG
GCGGTGGCGGTAGCAGTGGAGGGCGAGCGAGGGATCCGGTGCTTTCGTTT
CAGGGTTCTCAGGTTTCGATGCGAAAGAACAACGAAAGAAGCCTGACGCA
GTCCAAACTCAACTTTCCCGTCGTATTGTAG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig102:33040..36620- >mRNA_E-siliculosus-1a_F_contig102.188.1 ID=mRNA_E-siliculosus-1a_F_contig102.188.1|Name=mRNA_E-siliculosus-1a_F_contig102.188.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2682bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig102:33040..36620- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCATCGACACAAGCTGATGCATCGACACAAGCTGCCCGACAATTGGCA
AGAAGACACACGCTTCGACGGCCCAGAGCACTGGGGCATCGAAAAACGGT
GGAAGAGCCTATTCCCCAAGACTGGCTTCAAGACCAAGAGCGGCGGTGGT
ATTGACAGTAGTAGGGACAAGGATGGCGGCAGGAGTCGGGCAAAGGGGAC
AATGAACGCGGCGGTGGACATGACCCCCGAGGGAGACGACGACACCGTTA
CATGTAGCCTGCAGAGCGGCGGTGATACCGATCATTTCGCCAACTTCAAG
CAGGCAAGTCGTGCGGCTCGAAGGACAGTTCCCGAGACGGCGCCAGAGGA
CCCCGAAGAGGAGATGCCGCTTCCTTCTTACAGGAGACCGAACGCGAAAA
CAACGGCAACTAGCGGCAGCAGCATCAACACAAGTAGTATCGGTAAGGCA
CACTTAGACGAGGACGAGGAGCCGACGACGGGGCAAAGAAGGTGGAGAAT
CCACCCGAGAAGCACGGAGCCAGCGTCGAGCTCCCGTGCTGGAAGTAGGG
CCCGACAATTGGCAAGAAGACACACGCTTCGACGGCCCAGAGCACTGGGG
CATCGAAAAACGGTGGAAGAGCCTATTCCCCAAGACTGGCTTCAAGACCA
AGAGCGGCGGTGGTATTGACAGTAGTAGGGACAAGGATGGCGGCAGGAGT
CGGGCAAAGGGGACAATGAACGCGGCGGTGGACATGACCCCCGAGGGAGA
CGACGACACCGTTACATGTAGCCTGCAGAGCGGCGGTGATACCGATCATT
TCGCCAACTTCAAGCAGGCAAGTCGTGCGGCTCGAAGGACAGTTCCCGAG
ACGGCGCCAGAGGACCCCGAAGAGGAGATGCCGCTTCCTTCTTACAGGAG
ACCGAACGCGAAAACAACGGCAACTAGCGGCAGCAGCATCAACACAAGTA
GTATCGGTAAGGCACACTTAGACGAGGACGAGGAGCCGACGACGGGGCAA
AGAAGGTGGAGAATCCACCCGAGAAGCACGGAGCCAGCGTCGAGCTCCCG
TGCTGGAAGTAGGGCTCGTGATTCGGTGCTTCTGCCGTCTTCTTCCGAGG
AAGAGGAAGAGGAGGAGTTTGACGAAAGCGAGGCCAACATCACGGGCCAC
GAACGGAACAACTCCCGTTCACCCATCCCCCGCCCCCGCGAACAGAAAAA
CGGCGGGGTCGCCGATGAATCGCCCCCATACCCCCTCCCCCCACACAGCA
ACAAGAAGGGGAAAGGCAGTAGGTGCTCTCCAGGGAGTGGGGCCGCAGCC
TTCCCGTATGGCGACGACTCCCCCTCGAGGCAACGACACGAAGAGGAGAT
CGAGTCGTCTGGGTCGGAATCCTGCGGCGGCTTGTCGAACTCCGAATTTG
ACGGCAGCGAGGGCGAGGGTCGCAAGCCATCCTCATCCTCCCGGCGGCTG
TCGTCTTCTTCTCTTTCTCGCCGTAGGGAAGGGGGCGGGGAAGGGGAAGG
AACGCGGCGTACCAACGGGCGCGGGACAAAAGGGAAAGGGCGTGTCGTTC
GCGAGGGTGGTCGGAGGCGAAAGGGATCGTCCAGCCACAGCAGGATGGGC
AGCCACACGTCATCGAGCCCGATCCCGGGCTCCGCGCAAGGGGCGCGGGC
TCGCTCGGCACCATCTGGCAGCAAGAAGGCTCGCAAGGTTGTGAGAGCCC
AAGGGAACGAGCAAGGCTGGATAGCCAAGGGGGGTGGGAGCGGCGGTGGC
GGTAGCAGTGGAGGGCGAGCGAGGGATCCGGTGCTTTCGTTTCAGGGTTC
TCAGGTTTCGATGCGAAAGAACAACGAAAGAAGCCTGACGCAGTCCAAAC
TCAACTTTCCCGTCGTATTGTAGCTCGTGATTCGGTGCTTCTGCCGTCTT
CTTCCGAGGAAGAGGAAGAGGAGGAGTTTGACGAAAGCGAGGCCAACATC
ACGGGCCACGAACGGAACAACTCCCGTTCACCCATCCCCCGCCCCCGCGA
ACAGAAAAACGGCGGGGTCGCCGATGAATCGCCCCCATACCCCCTCCCCC
CACACAGCAACAAGAAGGGGAAAGGCAGTAGGTGCTCTCCAGGGAGTGGG
GCCGCAGCCTTCCCGTATGGCGACGACTCCCCCTCGAGGCAACGACACGA
AGAGGAGATCGAGTCGTCTGGGTCGGAATCCTGCGGCGGCTTGTCGAACT
CCGAATTTGACGGCAGCGAGGGCGAGGGTCGCAAGCCATCCTCATCCTCC
CGGCGGCTGTCGTCTTCTTCTCTTTCTCGCCGTAGGGAAGGGGGCGGGGA
AGGGGAAGGAACGCGGCGTACCAACGGGCGCGGGACAAAAGGGAAAGGGC
GTGTCGTTCGCGAGGGTGGTCGGAGGCGAAAGGGATCGTCCAGCCACAGC
AGGATGGGCAGCCACACGTCATCGAGCCCGATCCCGGGCTCCGCGCAAGG
GGCGCGGGCTCGCTCGGCACCATCTGGCAGCAAGAAGGCTCGCAAGGTTG
TGAGAGCCCAAGGGAACGAGCAAGGCTGGATAGCCAAGGGGGGTGGGAGC
GGCGGTGGCGGTAGCAGTGGAGGGCGAGCGAGGGATCCGGTGCTTTCGTT
TCAGGGTTCTCAGGTTTCGATGCGAAAGAACAACGAAAGAAGCCTGACGC
AGTCCAAACTCAACTTTCCCGTCGTATTGTAG back to top
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