Homology
BLAST of mRNA_E-siliculosus-1a_F_contig102.186.1 vs. uniprot
Match:
D7FZ53_ECTSI (Ribosomal protein S17 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZ53_ECTSI)
HSP 1 Score: 375 bits (962), Expect = 6.360e-127
Identity = 203/224 (90.62%), Postives = 203/224 (90.62%), Query Frame = 1
Query: 1 MFRTVLATIAPRATAASRSRAASG--RCAPFTAFATRRSSLS----SPSPPGGQSLPLDCAAAVTIRYVPRRCSWREMSSASAHVAAPGGGDLAMQGEGGGEGQXXXXXXXXRDARDPVTGEGIWVDEEDEPLDLEKPKKVQKFCGKVISDNMDKTIKVAVPYWYYVRRLGKRIIRYSKMMAHDEENSANVGDTVILVDCQQKSKRKKHTLLKIVRKLPRLDGI 654
M RTVLATIAPRATAASRSRAASG RCAPFTAFATRR S S SPSP GGQSLPLDCAAAVTIR VPRRCSWREMSSASAHVAAPGGGDLAMQGEGGGEGQ R ARDPVTGEGIWVDEEDEPLDLEKPKKVQKFCGKVISDNMDKTIKVAVPYWYYVRRLGKRIIRYSKMMAHDEENSANVGDTVILVDCQQKSKRKKHTLLKIVRKLPRLD I
Sbjct: 1 MLRTVLATIAPRATAASRSRAASGPGRCAPFTAFATRRPSPSPSRFSPSPQGGQSLPLDCAAAVTIRSVPRRCSWREMSSASAHVAAPGGGDLAMQGEGGGEGQQGEMGSSGRYARDPVTGEGIWVDEEDEPLDLEKPKKVQKFCGKVISDNMDKTIKVAVPYWYYVRRLGKRIIRYSKMMAHDEENSANVGDTVILVDCQQKSKRKKHTLLKIVRKLPRLDDI 224
BLAST of mRNA_E-siliculosus-1a_F_contig102.186.1 vs. uniprot
Match:
A0A8J5XMV1_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XMV1_DIALT)
HSP 1 Score: 72.0 bits (175), Expect = 3.450e-12
Identity = 36/77 (46.75%), Postives = 53/77 (68.83%), Query Frame = 1
Query: 409 KFCGKVISDNMDKTIKVAVPYWYYVRRLGKRIIRYSKMMAHDEENSANVGDTVILVDCQQKSKRKKHTLLKIVRKLP 639
K G+VIS M +++ V VPYW+ V+RL RI+R++K+MAHDE S GDTV L + SKRK H +++I+++ P
Sbjct: 5 KLIGQVISAKMQQSVVVKVPYWHVVQRLQMRIVRHTKLMAHDELESRE-GDTVQLKQSRPYSKRKHHKVIEILKRAP 80
BLAST of mRNA_E-siliculosus-1a_F_contig102.186.1 vs. uniprot
Match:
W4QJJ8_9BACI (30S ribosomal protein S17 n=6 Tax=Bacillaceae TaxID=186817 RepID=W4QJJ8_9BACI)
HSP 1 Score: 64.3 bits (155), Expect = 2.030e-9
Identity = 34/72 (47.22%), Postives = 46/72 (63.89%), Query Frame = 1
Query: 412 FCGKVISDNMDKTIKVAVPYWYYVRRLGKRIIRYSKMMAHDEENSANVGDTVILVDCQQKSKRKKHTLLKIV 627
+ G+V+SD MDKTI V V + R GKR+ K AHDEENSA VGD V +++ + SK K+ L++IV
Sbjct: 9 YTGRVVSDKMDKTISVLVETYKKDRLYGKRVKYSKKFKAHDEENSAKVGDIVKIMETRPLSKDKRFRLVEIV 80
BLAST of mRNA_E-siliculosus-1a_F_contig102.186.1 vs. uniprot
Match:
A0A1D2QTM8_9GAMM (30S ribosomal protein S17 n=1 Tax=Candidatus Endobugula sertula TaxID=62101 RepID=A0A1D2QTM8_9GAMM)
HSP 1 Score: 64.3 bits (155), Expect = 2.370e-9
Identity = 35/79 (44.30%), Postives = 47/79 (59.49%), Query Frame = 1
Query: 388 EKPKKVQKFCGKVISDNMDKTIKVAVPYWYYVRRLGKRIIRYSKMMAHDEENSANVGDTVILVDCQQKSKRKKHTLLKI 624
E+ KK + GKV+SD MDKTI V + GK + + SK+ AHDEENS N+GD V + + + SK K L+KI
Sbjct: 7 EQNKKARTLMGKVVSDKMDKTITVLIERRVKHPIYGKYMSKSSKLKAHDEENSCNIGDVVTIAESRPLSKSKTWALVKI 85
BLAST of mRNA_E-siliculosus-1a_F_contig102.186.1 vs. uniprot
Match:
A0A7S2GQL6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GQL6_9STRA)
HSP 1 Score: 67.0 bits (162), Expect = 3.880e-9
Identity = 34/73 (46.58%), Postives = 45/73 (61.64%), Query Frame = 1
Query: 412 FCGKVISDNMDKTIKVAVPYWYYVRRLGKRIIRYSKMMAHDEENSANVGDTVILVDCQQKSKRKKHTLLKIVR 630
G V+SD M KT+ VAV + V + GKR+ K MAHDEE +GD V++V CQQ SKRK + +I+R
Sbjct: 139 LVGTVVSDKMQKTVNVAVDRYRIVPKYGKRLKYTRKFMAHDEEEVCGMGDVVMIVPCQQISKRKHFMVREIIR 211
BLAST of mRNA_E-siliculosus-1a_F_contig102.186.1 vs. uniprot
Match:
A0A0S7Z531_9GAMM (30S ribosomal protein S17 n=1 Tax=Gammaproteobacteria bacterium SG8_30 TaxID=1703404 RepID=A0A0S7Z531_9GAMM)
HSP 1 Score: 63.5 bits (153), Expect = 4.790e-9
Identity = 33/72 (45.83%), Postives = 44/72 (61.11%), Query Frame = 1
Query: 412 FCGKVISDNMDKTIKVAVPYWYYVRRLGKRIIRYSKMMAHDEENSANVGDTVILVDCQQKSKRKKHTLLKIV 627
G V+S+ MDKTI VAV GK + R +K++AHDE N N GDTV + C+ SKRK TL+++V
Sbjct: 18 LSGTVVSNKMDKTITVAVERVMKHPTYGKYVRRTTKLLAHDENNECNEGDTVDIAQCRPLSKRKAWTLVRVV 89
BLAST of mRNA_E-siliculosus-1a_F_contig102.186.1 vs. uniprot
Match:
UPI00195E68FA (30S ribosomal protein S17 n=3 Tax=Gracilibacillus TaxID=74385 RepID=UPI00195E68FA)
HSP 1 Score: 63.2 bits (152), Expect = 5.320e-9
Identity = 30/72 (41.67%), Postives = 46/72 (63.89%), Query Frame = 1
Query: 412 FCGKVISDNMDKTIKVAVPYWYYVRRLGKRIIRYSKMMAHDEENSANVGDTVILVDCQQKSKRKKHTLLKIV 627
+ G+V+SD MDKTI V V + + GKR+ K AHDE N+A +GD V +++ + +SK K+ LL++V
Sbjct: 10 YTGRVVSDKMDKTITVVVETYKFHNLYGKRVKYSKKFKAHDENNTAKIGDIVRIMETRPQSKTKRFRLLEVV 81
BLAST of mRNA_E-siliculosus-1a_F_contig102.186.1 vs. uniprot
Match:
A0A4D6WZL6_9FLOR (30S ribosomal protein S17, chloroplastic n=1 Tax=Plumaria plumosa TaxID=189642 RepID=A0A4D6WZL6_9FLOR)
HSP 1 Score: 62.8 bits (151), Expect = 6.050e-9
Identity = 33/79 (41.77%), Postives = 50/79 (63.29%), Query Frame = 1
Query: 400 KVQKFCGKVISDNMDKTIKVAVPYWYYVRRLGKRIIRYSKMMAHDEENSANVGDTVILVDCQQKSKRKKHTLLKIVRKL 636
K +K G V+S+NM+KTI VAV ++ GK I+ +K AHDE N+ N+GD V + + + SK K L+K++RK+
Sbjct: 2 KQKKTFGMVVSNNMNKTIVVAVKKQVSHKKYGKIFIKTNKYYAHDENNTCNIGDIVQIQETRPLSKNKHWMLIKLIRKI 80
BLAST of mRNA_E-siliculosus-1a_F_contig102.186.1 vs. uniprot
Match:
A0A651GBH4_9BACT (30S ribosomal protein S17 n=3 Tax=Balneolaceae TaxID=1813606 RepID=A0A651GBH4_9BACT)
HSP 1 Score: 62.8 bits (151), Expect = 7.270e-9
Identity = 34/70 (48.57%), Postives = 44/70 (62.86%), Query Frame = 1
Query: 418 GKVISDNMDKTIKVAVPYWYYVRRLGKRIIRYSKMMAHDEENSANVGDTVILVDCQQKSKRKKHTLLKIV 627
GKV+SD MDK+I VAV GK I + +K MAHDE N AN GDTV+++ + SKRK L+ I+
Sbjct: 14 GKVVSDRMDKSITVAVDRQIKHPIYGKFITKTTKYMAHDENNDANTGDTVLIMSTRPLSKRKSWRLVDII 83
BLAST of mRNA_E-siliculosus-1a_F_contig102.186.1 vs. uniprot
Match:
A0A1G0F8I5_9GAMM (30S ribosomal protein S17 n=1 Tax=Gammaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_42_13 TaxID=1798271 RepID=A0A1G0F8I5_9GAMM)
HSP 1 Score: 62.4 bits (150), Expect = 9.680e-9
Identity = 33/84 (39.29%), Postives = 52/84 (61.90%), Query Frame = 1
Query: 385 LEKPKKVQKFCGKVISDNMDKTIKVAVPYWYYVRRLGKRIIRYSKMMAHDEENSANVGDTVILVDCQQKSKRKKHTLLKIVRKL 636
+ + K+V+ GKVIS+ MDKTI VA+ R K + R +K+ AHDE+N+ +GD V +V+ + KSK K L ++V ++
Sbjct: 1 MTEQKRVKTLTGKVISNKMDKTIVVAIERQVTHRLYKKSVKRTTKIHAHDEDNTCEIGDIVKIVETRPKSKTKAWALAEVVERI 84
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig102.186.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90 )
Total hits: 25
0 1 Expect = 6.36e-127 / Id = 90.63 Expect = 3.45e-12 / Id = 46.75 Expect = 2.03e-9 / Id = 47.22 Expect = 2.37e-9 / Id = 44.30 Expect = 3.88e-9 / Id = 46.58 Expect = 4.79e-9 / Id = 45.83 Expect = 5.32e-9 / Id = 41.67 Expect = 6.05e-9 / Id = 41.77 Expect = 7.27e-9 / Id = 48.57 Expect = 9.68e-9 / Id = 39.29 Sequence D7FZ53_ECTSI A0A8J5XMV1_DIALT W4QJJ8_9BACI A0A1D2QTM8_9GAMM A0A7S2GQL6_9STRA A0A0S7Z531_9GAMM UPI00195E68FA A0A4D6WZL6_9FLOR A0A651GBH4_9BACT A0A1G0F8I5_9GAMM Pages
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Start 1 Stop 1 Cds size 657 Model size 1284 Exons 4 Ec32 ortholog Ec-02_006320.1 Ec32 ortholog description Ribosomal protein S17 Hectar predicted targeting category mitochondrion BRITE br01610,ko00000,ko00001,ko00002,ko03011 Best eggNOG OG NA|NA|NA Best tax level Idiomarinaceae COG Functional cat. J EggNOG OGs 1MZIK@1224,1S8SS@1236,2QGC7@267893,COG0186@1,COG0186@2 EggNOG free text desc. One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA GOs GO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042221,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046677,GO:0050896,GO:0065003,GO:0070181,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904 KEGG Module M00178,M00179 KEGG Pathway ko03010,map03010 KEGG ko ko:K02961 Preferred name rpsQ Seed eggNOG ortholog 283942.IL1915 Seed ortholog evalue 8.6e-10 Seed ortholog score 70.9 Taxonomic scope Bacteria
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927523.4513412-UTR-E-siliculosus-1a_F_contig102:17163..17790 1622927523.4513412-UTR-E-siliculosus-1a_F_contig102:17163..17790 Ectocarpus siliculosus Ec863f_EcPH12_90f female UTR E-siliculosus-1a_F_contig102 17164..17790 - 1696318566.2334144-UTR-E-siliculosus-1a_F_contig102:17163..17790 1696318566.2334144-UTR-E-siliculosus-1a_F_contig102:17163..17790 Ectocarpus siliculosus Ec863f_EcPH12_90f female UTR E-siliculosus-1a_F_contig102 17164..17790 -
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig102.186.1
>prot_E-siliculosus-1a_F_contig102.186.1 ID=prot_E-siliculosus-1a_F_contig102.186.1|Name=mRNA_E-siliculosus-1a_F_contig102.186.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=219bp
MFRTVLATIAPRATAASRSRAASGRCAPFTAFATRRSSLSSPSPPGGQSL back to top mRNA from alignment at E-siliculosus-1a_F_contig102:17164..20424-
Legend: polypeptide CDS UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig102.186.1 ID=mRNA_E-siliculosus-1a_F_contig102.186.1|Name=mRNA_E-siliculosus-1a_F_contig102.186.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3261bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig102:17164..20424- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)ATGTTCAGAACGGTGCTGGCAACGATTGCCCCAAGGGCAACGGCGGCAAG
CAGGTCGCGAGCAGCCTCCGGCCGCTGCGCACCGTTTACGGCTTTCGCCA
CCAGACGCTCTTCCCTTTCCTCTCCTTCTCCTCCAGGAGGGCAGTCGCTA
CCACTCGACTGCGCTGCCGCTGTTACAATTAGGTATGTTCCGAGGAGATG
CTCTTGGCGGGAAATGTCTTCGGCCAGCGCGCACGTTGCCGCACCGGGGG
GTGGCGATTTAGCTATGCAGGGAGAAGGGGGTGGGGAGGGACAGCAGGGG
GAGATGGGCAGCAGCGGGAGAGATGCTCGGGATCCGGTGACGGGCGAGGG
GATTTGGGTGGACGAAGAGGATGAG GTGTGTGCTTGTGTGTTCGTGTATG
ATCTTTGTCTTGTAGGGTGGAGACCTATCGTGCCGGCAACATCGGTCCCG
ACGCAATGCTCACCAATATATTGGAGTGCACATTAGTGTAGTATGGGTGC
ATGCACACGGGAGTACTCTCGGCAAGTCAACCCGTGGAACAGCAGTAGCG
GCAACGGTGCAGCAGCAGTGGGTCCTCAACAACGCCGGTTGACTAACGCC
GGTGGCGCTGCATAGCGCCCGTGAACTTGCTGGGCACAAACTGAATGAGG
AAGTCATTCTGTACTTTGAACAGCGCCGGTCGATTTGTCGGGCACATACC
GGCGTTCGTCATTGAGGGCCCACTACAGCAGCAGTACAGCTGTACATGCA
GTTCTGGTGAAAGTAGACGACACAAGACACCCAACGTCGGAGGGGGCACA
CGACTGAGATGAGATGCAACTCAACAAGACCCACAGGATGCATAGAGCTT
TTCTTGGCACCACGTATTGTAGATTAGTGCCGATGTGCACGTAGATTAGC
CTATAATACAGTAGCATATGTGTCGCATAGGTACCCGATGGGAGCACGAG
GCACGAGGCACAAGGTGCTCCTTCCCCCCGCTCCTCGTGTATTGAGCCAC
ATCTGCTGTTATAGCTCGAAACTGCCGTTGGTCTATAACTACATACGGTA
TCTCAGATTCAGCGTTCGATTTACTGCTGTACGTCTCTGATACGGCTGTC
GTTGTGTGTGTGAGTGCGACCAATCGATCAATCCCCGCCGCATTCATTCC
CTAAAGGACCAAAGGAACGGCGTTCGTTGCCAGGTATTGTACTGTGCATG
TGGTTTGAAGAGCAGTTCCTTTCAACTTTCCACACTGCCGCGTGCTTACC
CGATCGGGCAAACCACGATTTGTTCACTCTTCACTTGTACAGTGCGTCTG
CAGGGCGATCCTTGCCAATCCTTCCTCACCGTCCCACGGTTGTCCCCCCC
CTGCCGGCGTGCTTGTTCCCATTTCCCGTGTGCCCCCTCTCCGTATCTCC
CTTTCATGTGTCATGCGGTGGGATGCTGTATCATCATCAACAATTAGCCG
CTAGATCTGGAGAAACCAAAGAAGGTCCAAAAGTTCTGCGGCAAGGTTAT
CTCGGACAACATGGACAAGACCATCAAG GTGGCTTGCCATTTCCCTGTAT
CTGCGTAGTAAACTTGTTGACTTCGCACCGTCTGTTGTATCCGCTGTATC
GCCCCCCAGCTATCTCTTATTGAAATGTGAAGTGTTTTGCGGCTTTTGTT
TCAGACTGCCGATATGCAGCACATGTGTCGTGCTTGACCTGGGGCCATGT
GTAGCACGGTAGAAACAACTGCGGGTGTTGGAGGTTGTGATATTTCTTCA
ACCGTACTTACTGTCTGCGCGCCTTTTGAGCGTTCTTGATCGACGGATGG
TGTCTGGGAATGACGCAATGGCCACCCACAATGATGGCGCGATGATGCAG
GTGGCTGTCCCATACTGGTACTACGTCAGGCGACTCGGCAAGAGAATCAT
CCGGTACAGCAAGATGATGGCCCATGATGAGGAGAACAGCGCAAAC GTAA
GGAACGACCGTTTGCCGATATTTTCGAACCGTGTCGCTCTCTTGTTGTCG
CGTTTTTTGTAGTTTCCTTTTTTATCGGCATTCCGACGAAGGCAGCAAGG
AGGGTCTTTTACGCTTGGCTCGGTATGTACTCGTAGGTTTTTTTTTAATC
GAAACAGCCACTGCTGCGGCGTCTCGCTTGAGCCGTGGTTATTGTTGGTT
ACGGAGCCAAAGGACCAAGTGTCACCAATGGGTGGTGCAAGATGAAAATA
TAAGGCTGTCAGCAAATCATGCGCGGTGCCCCCCCCATGTTTGACGGGGA
CAGCTGATTTTTTTGGGCAATTGACTTGACACGTGATCGACCATCCCAGC
TACATGTGACCTTTCCAAGCTCGACCAGCTGGCTCCCAGCTGTGACGTTT
TCCAAGCTCCACAAGCAACACAGCTGACTTGTTTAGATTCGAAGAACCCG
GCGAATCGCATCGAACCAGGAGGAACAATATGAAGCCGTACACAGTCGCC
ACATGCTACGTAAGCAATGGAGTGGTCCTCCGGGCTGATGGTGTCGATAC
CAATGTTTCGTGCGGCTTTTCTGATGCAGGTCGGCGACACAGTGATCCTG
GTGGATTGCCAACAGAAGAGCAAGAGAAAAAAACACACCCTCTTGAAAAT
CGTGCGCAAGCTGCCGAGGCTTGACGGCATCTGA TGGCAACGAAGGAAAT
TGTTACAAAAGCCGTCTGGTGGGCGAGCGTGGACATGATGCTGTCAATCG
CCATCACGGACCGTCTCCATCTTTTGCACAGGGAGCTCCTGAAGAACCCA
AGGACAACAGTGGCAGAGGACGTTGGCCGCGATACTCTTGCAGTAGAGTA
AGCGTTGCTCCCTGGTACCGCGGTATGCAATGGTTTGACATCATTTTCTG
CCGCCAGGCTTTCAATGAGCAATGAGCAATGAGCAAGCTAAGAGCTTCCA
AAGGTCGGGCAAGATAACAGCTTTGACAGCTTTGACGCCTGCACGAAGTT
GCGGGGCGTGGGATGGAACTCTAGGCAATTGAAGTACTACTGTAGGCGAA
TTCGAGAGCCCGAGGAAGAAGGCAAGCTGCTCCACACGGTATAAAGACTT
CCAAGTGTAGACGGACCCTCTCTGCCCTGGTTGATGTTGACTTGCACGGG
AAATGTTCCGCAAATAAGCAGGGTCGTTAGCGGCGTTCGCCGATGAATAT
GAGCCTTTAGTAGGGATCGTTGCCTTTGGTGTGAATTGCCGCTCGGGGTT
GCTGGGGTGCGAGCACTGCTCTTTTGTCGAATTCAAGGTGGCGGGGTATT
TTGAACACACA back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig102:17164..20424-
>mRNA_E-siliculosus-1a_F_contig102.186.1 ID=mRNA_E-siliculosus-1a_F_contig102.186.1|Name=mRNA_E-siliculosus-1a_F_contig102.186.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1314bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig102:17164..20424- (Ectocarpus siliculosus Ec863f_EcPH12_90f female) back to top