mRNA_E-siliculosus-1a_F_contig1019.178.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1019.178.1
Unique NamemRNA_E-siliculosus-1a_F_contig1019.178.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1019.178.1 vs. uniprot
Match: D8LIK1_ECTSI (Prostaglandin E synthase 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIK1_ECTSI)

HSP 1 Score: 537 bits (1384), Expect = 1.710e-184
Identity = 267/270 (98.89%), Postives = 268/270 (99.26%), Query Frame = 3 
Query:  312 MAAGAIPSCSAMTASTEAATAGADGNSRHLEGEDITVYQYKICPFCNKLKVVMDFLGIPYSVTEVNPLTKKEIKFSEDYRKVPIVRMGGELFKDSPVIIDELIARLRETKVMSDEEHAVFCSSDAKKWAEWADKQLAVLLFPNLTRNFSESYQAFSYVNDVDTFSMMDKVSNQVIGSAAMWAAQGKIKKKYNIDDEREALFSAIKDWTDALGEVDGPFFGGDRPNLGDLCVFGCIRAIEGLDTHKDVLARQGVGAWYQSMVSTLDYAPSA 1121
            MAAGAIPSCSAMTAST AATAGADGNSRHLEGEDITVYQYKICPFCNKLKVVMDFLGIPYSVTEVNPLTKKEIKFSEDYRKVPIVRMGGELFKDSPVIIDELIARLRETKVMSDEEHAVFCSSDAKKWAEWADKQLAVLLFPNLTRNFSESYQAFSYVNDVDTFSMMDK+SNQVIGSAAMWAAQGKIKKKYNIDDEREALFSAIKDWTDAL EVDGPFFGGDRPNLGDLCVFGCIRAIEGLDTHKDVLARQGVGAWYQSMVSTLDYAPSA
Sbjct:    1 MAAGAIPSCSAMTASTAAATAGADGNSRHLEGEDITVYQYKICPFCNKLKVVMDFLGIPYSVTEVNPLTKKEIKFSEDYRKVPIVRMGGELFKDSPVIIDELIARLRETKVMSDEEHAVFCSSDAKKWAEWADKQLAVLLFPNLTRNFSESYQAFSYVNDVDTFSMMDKISNQVIGSAAMWAAQGKIKKKYNIDDEREALFSAIKDWTDALREVDGPFFGGDRPNLGDLCVFGCIRAIEGLDTHKDVLARQGVGAWYQSMVSTLDYAPSA 270
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1019.178.1 vs. uniprot
Match: A0A835YKS9_9STRA (Prostaglandin E synthase 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKS9_9STRA)

HSP 1 Score: 307 bits (787), Expect = 4.830e-95
Identity = 151/237 (63.71%), Postives = 176/237 (74.26%), Query Frame = 3 
Query:  411 DITVYQYKICPFCNKLKVVMDFLGIPYSVTEVNPLTKKEIKFSEDYRKVPIVRMGGELFKDSPVIIDELIARLRETKVMSDEEHAVFCSSDAKKWAEWADKQLAVLLFPNLTRNFSESYQAFSYVNDVDTFSMMDKVSNQVIGSAAMWAAQGKIKKKYNIDDEREALFSAIKDWTDALGEVDGP-FFGGDRPNLGDLCVFGCIRAIEGLDTHKDVLARQ-GVGAWYQSMVSTLDYAP 1115
            DI VYQYKICPFCNKLK VMDFLGIPY VTEVNPLTKKEIKFS+DY+KVPIVR+  +   DSP II  L+  L+    +S ++   F S DA  WAEWADKQLAVLLFPN+TR+F ESYQAFSYV  V TFS +DK +NQ +GS AMW AQGKIKKKYNI+DEREAL+ A++ WT    E+ G  F GG  PNLGDLCVFGC+RAIEGLD H + +  +  +  WY  M+  L Y P
Sbjct:   44 DIMVYQYKICPFCNKLKAVMDFLGIPYKVTEVNPLTKKEIKFSKDYQKVPIVRLDEQYLHDSPAIIQALLDGLKARGAVSKDQLDAFASPDAMNWAEWADKQLAVLLFPNITRSFGESYQAFSYVQGVSTFSALDKAANQALGSFAMWMAQGKIKKKYNIEDEREALYGALRQWTT---EIQGKKFSGGAVPNLGDLCVFGCLRAIEGLDAHTEAMQEEKALAEWYARMLGVLQYGP 277
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1019.178.1 vs. uniprot
Match: W7TEG9_9STRA (Prostaglandin E synthase 2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TEG9_9STRA)

HSP 1 Score: 290 bits (741), Expect = 1.290e-86
Identity = 142/244 (58.20%), Postives = 177/244 (72.54%), Query Frame = 3 
Query:  399 LEGEDITVYQYKICPFCNKLKVVMDFLGIPYSVTEVNPLTKKEIKFSEDYRKVPIVRMGGELFKDSPVIIDELIARLRETKVMSDEEHAVFCSSDAKKWAEWADKQLAVLLFPNLTRNFSESYQAFSYVNDVDTFSMMDKVSNQVIGSAAMWAAQGKIKKKYNIDDEREALFSAIKDWTDALGEVDGPFFGGDRPNLGDLCVFGCIRAIEGLDTHKDVLARQGVGAWYQSMVSTLDYAPSA*KC 1130
            LEG  IT+YQYKICPFC K+K V+DF  +PY   +VNPLTK EIKFS DYRKVPI R+G E+ +DSPVI+  +   L   +V    +  VF S DA +WAEWADK+LAVLLFPN+TR+F ES+QAFSYVN+V  FS +DK+SNQ +G+ AMWAAQGKIKKKYNI DER ALF A++ WT  +GE   PF GG +PN+GDL V+ CI AIEGLD  KD++A   +  WY    + +++A  A  C
Sbjct:  157 LEGLRITLYQYKICPFCCKVKAVLDFYKVPYETLDVNPLTKAEIKFSSDYRKVPIARLGQEVVRDSPVIVKRIADMLYAARVAPTRDLDVFFSPDAMRWAEWADKELAVLLFPNITRSFGESFQAFSYVNEVPHFSFLDKLSNQWVGATAMWAAQGKIKKKYNIADERTALFDALQRWTREVGEK--PFLGGTQPNVGDLGVYACIHAIEGLDAFKDLMANTDISEWY----TRVEHAIGASSC 394
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1019.178.1 vs. uniprot
Match: A0A7S1XY88_9STRA (Prostaglandin E synthase 2 (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XY88_9STRA)

HSP 1 Score: 266 bits (681), Expect = 3.900e-80
Identity = 129/223 (57.85%), Postives = 164/223 (73.54%), Query Frame = 3 
Query:  411 DITVYQYKICPFCNKLKVVMDFLGIPYSVTEVNPLTKKEIKFSEDYRKVPIVRMGGELFKDSPVIIDELIARLRETKVMSDEEHAVFCSSDAKKWAEWADKQLAVLLFPNLTRNFSESYQAFSYVNDVDTFSMMDKVSNQVIGSAAMWAAQGKIKKKYNIDDEREALFSAIKDWTDALGEVDGPFFGGDRPNLGDLCVFGCIRAIEGLDTHKDVLARQGVGAW 1079
            DI +YQYKICPFCNK+K ++D+ G+ Y V EVNPLTK + K   DY+KVP+  +GGE+  DSP I+  L A++ E     D + A F S  A++W E+ADK+LAVLLFPN+TRN++ESYQAFSYVNDV TFS MDK+SN  IGS AMW AQGK+KKKY I+DER+ALFSA+  + +ALG  D  F GG  PN+GD+ VFG IRAIEG+D   D+ +   +G W
Sbjct:   18 DIVIYQYKICPFCNKIKALLDYYGVDYHVIEVNPLTKAQTKAVTDYKKVPVANIGGEIVTDSPQIVRVLKAKMAEA---DDVDFAGFFSEAAEEWTEFADKKLAVLLFPNITRNWNESYQAFSYVNDVPTFSSMDKMSNLAIGSTAMWLAQGKLKKKYGIEDERDALFSAVTKFEEALG--DNAFLGGANPNMGDIAVFGVIRAIEGMDAFNDLQSETKIGPW 235
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1019.178.1 vs. uniprot
Match: A0A7S0MFA7_9CRYP (Prostaglandin E synthase 2 n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MFA7_9CRYP)

HSP 1 Score: 261 bits (667), Expect = 4.300e-77
Identity = 131/249 (52.61%), Postives = 169/249 (67.87%), Query Frame = 3 
Query:  387 NSRHLEGEDITVYQYKICPFCNKLKVVMDFLGIPYSVTEVNPLTKKEIKFSED---------YRKVPIVRMGGELFKDSPVIIDELIARLRETKVMSDEEHAV-FCSSDAKKWAEWADKQLAVLLFPNLTRNFSESYQAFSYVNDVDTFSMMDKVSNQVIGSAAMWAAQGKIKKKYNIDDEREALFSAIKDWTDALGEVDGPFFGGDRPNLGDLCVFGCIRAIEGLDTHKDVLARQGVGAWYQSMVSTL 1103
            +S  L+   + +YQY+ICPFCNK+K V+DF  +PY   EVNPLTK E+ F++D         YRKVP+VR+GG++  DSPV++D L+  L +  V+   + A  +      +W  WADK+LAVLLFPNLTR  SESYQAF YV+ V  FS +DKVSN++ GS AMW AQGKIKKKY I DER AL +++  WTDA+G+ D  F GG  PNL DLCVFG +R+IEGL+TH  VL    VG WY+ M   +
Sbjct:   49 SSPPLQSLKLEMYQYEICPFCNKIKAVLDFHKVPYKTIEVNPLTKSELSFTKDLPEDHPAHKYRKVPLVRIGGDVVADSPVVLDRLVEGLGKEGVIGAAQMARDYKDPKVAEWVRWADKELAVLLFPNLTRTLSESYQAFGYVDSVPHFSFLDKVSNRMAGSLAMWLAQGKIKKKYGITDERAALRASLDRWTDAIGKSD--FLGGASPNLADLCVFGTLRSIEGLETHAIVLRETQVGPWYERMAGRV 295
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1019.178.1 vs. uniprot
Match: A0A0M0JG54_9EUKA (Prostaglandin E synthase 2 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JG54_9EUKA)

HSP 1 Score: 249 bits (635), Expect = 9.170e-73
Identity = 126/243 (51.85%), Postives = 164/243 (67.49%), Query Frame = 3 
Query:  357 TEAATAGADGNSRHLEGEDITVYQYKICPFCNKLKVVMDFLGIPYSVTEVNPLTKKEIK-FSEDYRKVPIVRMGGELFKDSPVIIDELIARLRETKVMSDEEHAVFCSSDAKKWAEWADKQLAVLLFPNLTRNFSESYQAFSYVNDVDTFSMMDKVSNQVIGSAAMWAAQGKIKKKYNIDDEREALFSAIKDWTDALGEVDGPFFGGDRPNLGDLCVFGCIRAIEGLDTHKDVLARQGVGAWY 1082
            T AA AG  G+        + +YQY+ICPFCNK+K ++D   +PY  TEVNPLTK EIK +S  YRKVPI ++G E   DS VI   L+ R+    V+  ++ A F S  A +WA+W+D++ AVLLFPN+TR+FSESYQAF YV  V  FSM+DKVSNQ+IGS  MW AQGKIKKKY IDDER A+ + I  W +  G    PF GG +PN  D+CVFGC++AI+  D +K+++A   +  WY
Sbjct:   34 TTAAAAGTVGS--------VLIYQYEICPFCNKVKALLDLYRVPYETTEVNPLTKGEIKAWSGGYRKVPIAKLGDEQVNDSGVISQALLDRMGTAGVLDAKQLAEFRSPKALEWAKWSDEKFAVLLFPNITRSFSESYQAFGYVMSVPHFSMLDKVSNQIIGSFFMWMAQGKIKKKYGIDDERAAVVAGINHWLNE-GVGSKPFAGGKQPNFADVCVFGCLKAIDRTDAYKEIMAETAIKPWY 267
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1019.178.1 vs. uniprot
Match: A0A7S0IJQ6_9EUKA (Prostaglandin E synthase 2 n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IJQ6_9EUKA)

HSP 1 Score: 248 bits (633), Expect = 2.450e-72
Identity = 121/237 (51.05%), Postives = 165/237 (69.62%), Query Frame = 3 
Query:  414 ITVYQYKICPFCNKLKVVMDFLGIPYSVTEVNPLTKKEIKFSEDYRKVPIVRMGG------ELFKDSPVIIDELIARLRETKVMSDEEHAVFCSSDAKKWAEWADKQLAVLLFPNLTRNFSESYQAFSYVNDVDTFSMMDKVSNQVIGSAAMWAAQGKIKKKYNIDDEREALFSAIKDWT-DALGEVDGPFFGGDRPNLGDLCVFGCIRAIEGLDTHKDVLARQGVGAWYQSMVSTL 1103
            + ++QY ICPFCNK+K ++D   IPY   +VNPLTKKEIKFS++YRKVPI  +GG          DSP+I D L+ R+  +K +  +E A F S+ + +WAEW+DK+LAVLLFP +TR F+ES+QAF YV  V  FSM+DK+SNQV+G+ AMW AQGKIKKKY IDDE  A+  AI  W  + +GE    F GG +P+LGD+ V+GC++AI+   T  +++A  GV  WY+ M + +
Sbjct:   50 VRLFQYDICPFCNKIKAMLDLHKIPYETVDVNPLTKKEIKFSKEYRKVPIAMLGGLEGSGAVQVNDSPLIADTLLERMELSKAVRSDELAHFRSATSLEWAEWSDKKLAVLLFPRMTRTFAESFQAFGYVMQVPHFSMVDKLSNQVVGAFAMWMAQGKIKKKYAIDDEAAAVREAIAHWLKEGVGEAS--FAGGQKPHLGDVAVYGCLKAIDRTSTFSEIMAETGVKPWYERMTAEV 284
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1019.178.1 vs. uniprot
Match: A0A7S0HU74_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HU74_9CRYP)

HSP 1 Score: 236 bits (603), Expect = 4.790e-68
Identity = 121/239 (50.63%), Postives = 158/239 (66.11%), Query Frame = 3 
Query:  414 ITVYQYKICPFCNKLKVVMDFLGIPYSVTEVNPLTKKEIKFSED---------YRKVPIVRMGGELFKDSPVIIDELIARLRETKVMSDEEHAVFCSS----DAKKWAEWADKQLAVLLFPNLTRNFSESYQAFSYVNDVDTFSMMDKVSNQVIGSAAMWAAQGKIKKKYNIDDEREALFSAIKDWTDALGEVDGPFFGGDRPNLGDLCVFGCIRAIEGLDTHKDVLARQGVGAWYQSM 1091
            I +YQY+ICPFCNK+K V+D+    Y+  EVNPL+KKEI F+ +         YRKVPI  +G +L  DS +I++ ++ +L E K   +E+  + CSS      ++W  WAD++LAVLLFPNLTR FSES+QAFSYV  V TFS++DK+SN V G+ AMW AQGK+K KY I DER+AL  A+  W DAL     PF GG  PNL DLCVFG +RA++G  T + V+    V  WY  M
Sbjct:   43 IKIYQYEICPFCNKVKAVLDYCKFSYTTVEVNPLSKKEINFTRELPSDHACSNYRKVPIALVGEDLIADSSLILNAIVEKLSEEK---EEKIKLLCSSAKDPQVQEWVRWADQELAVLLFPNLTRTFSESFQAFSYVQQVPTFSLLDKLSNHVAGATAMWLAQGKLKSKYKISDERQALALALAKWADALDRK--PFLGGSSPNLADLCVFGVLRAVDGSAT-QTVIEESPVSDWYGRM 275
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1019.178.1 vs. uniprot
Match: A0A7S2C557_9EUKA (Prostaglandin E synthase 2 n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2C557_9EUKA)

HSP 1 Score: 235 bits (599), Expect = 3.040e-67
Identity = 116/233 (49.79%), Postives = 157/233 (67.38%), Query Frame = 3 
Query:  414 ITVYQYKICPFCNKLKVVMDFLGIPYSVTEVNPLTKKEIK-FSEDYRKVPIVRMGGELFKDSPVIIDELIARLRETKVMSDEEHAVFCSSDAKKWAEWADKQLAVLLFPNLTRNFSESYQAFSYVNDVDTFSMMDKVSNQVIGSAAMWAAQGKIKKKYNIDDEREALFSAIKDW-TDALGEVDGPFFGGDRPNLGDLCVFGCIRAIEGLDTHKDVLARQGVGAWYQSMVSTLD 1106
            + VYQY+ICPFC K+K ++D   +PY+ TEVNPLTK EIK +S  Y+KVPI  + GE   DSPVI  +++ RL  +  +  +    F S  A +WA+W+D++LAVL FPN+TR F E+Y+AF YV  V  FS +DK +NQ IGS  MW AQGKIKKKY IDDEREA  S +  W ++A+G    PF GG+RPNL D+ VFG ++AI+    H D++A   V  WY+ M+  ++
Sbjct:   70 VQVYQYEICPFCCKVKALLDIHRVPYATTEVNPLTKSEIKAWSGGYKKVPIALIAGEQVNDSPVICTQILDRLAASGQIDKKLLDEFRSPSALEWAKWSDEKLAVLAFPNITRTFGEAYEAFGYVWGVPHFSQLDKAANQAIGSFFMWMAQGKIKKKYGIDDEREAFVSGVNKWMSEAVGTT--PFAGGERPNLADVAVFGLLKAIDRTAAHSDIMAATSVAPWYERMLEAVE 300
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1019.178.1 vs. uniprot
Match: A0A7S3Y9Y7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y9Y7_HETAK)

HSP 1 Score: 232 bits (591), Expect = 8.130e-67
Identity = 117/224 (52.23%), Postives = 155/224 (69.20%), Query Frame = 3 
Query:  411 DITVYQYKICPFCNKLKVVMDFLGIPYSVTEVNPLTKKEIKFSEDYRKVPIVRMGGELFKDSPVIIDELIARLRETKVMSDEEHAVFC------------SSDAKKWAEWADKQLAVLLFPNLTRNFSESYQAFSYVNDVDTFSMMDKVSNQVIGSAAMWAAQGKIKKKYNIDDEREALFSAIKDWTDALGEVDGPFFGGDRPNLGDLCVFGCIRAIEGLDTHK 1046
            DI +YQYKICPFC+K+K V+DF  IPYS  EVNPLTK EI FS+DYRKVPI  + G + KDS  IID ++++++       EE A F             ++ A   A WAD++LAVLLFPN+TR+F+E+ QAF+Y+ DV TFS   K++N V+GS AMW AQGK+KKKY I+DER+AL+S + +  +ALG    PF GG  P +GDL  +G +RA+EGLD H+
Sbjct:   38 DIKLYQYKICPFCSKVKTVLDFFDIPYSTIEVNPLTKAEISFSKDYRKVPIADVDGVVIKDSTEIIDHILSKIQFDDA---EERARFLPPPXXXXPAGAVAAPAAGTAAWADRKLAVLLFPNITRSFAEARQAFAYIQDVPTFSTPQKIANVVLGSTAMWLAQGKLKKKYGIEDERQALYSEVANLLEALG--GRPFLGGAAPGVGDLAAYGVLRAVEGLDAHR 256
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1019.178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIK1_ECTSI1.710e-18498.89Prostaglandin E synthase 2 n=2 Tax=Ectocarpus TaxI... [more]
A0A835YKS9_9STRA4.830e-9563.71Prostaglandin E synthase 2 n=1 Tax=Tribonema minus... [more]
W7TEG9_9STRA1.290e-8658.20Prostaglandin E synthase 2 n=2 Tax=Monodopsidaceae... [more]
A0A7S1XY88_9STRA3.900e-8057.85Prostaglandin E synthase 2 (Fragment) n=1 Tax=Phae... [more]
A0A7S0MFA7_9CRYP4.300e-7752.61Prostaglandin E synthase 2 n=1 Tax=Cryptomonas cur... [more]
A0A0M0JG54_9EUKA9.170e-7351.85Prostaglandin E synthase 2 n=1 Tax=Chrysochromulin... [more]
A0A7S0IJQ6_9EUKA2.450e-7251.05Prostaglandin E synthase 2 n=1 Tax=Calcidiscus lep... [more]
A0A7S0HU74_9CRYP4.790e-6850.63Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A7S2C557_9EUKA3.040e-6749.79Prostaglandin E synthase 2 n=1 Tax=Haptolina brevi... [more]
A0A7S3Y9Y7_HETAK8.130e-6752.23Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1019contigE-siliculosus-1a_F_contig1019:11487..16162 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size813
Model size2453
Exons5
Ec32 orthologEc-18_003320.1
Ec32 ortholog descriptionGlutathione S-transferase, C-terminal-like
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko01000
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.O
EC5.3.99.3
EggNOG OGsKOG3029@1,KOG3029@2759
EggNOG free text desc.prostaglandin-E synthase activity
KEGG Pathwayko00590,ko01100,map00590,map01100
KEGG ReactionR02265
KEGG koko:K05309
KEGG rclassRC00672
Seed eggNOG ortholog2880.D8LIK1
Seed ortholog evalue3.6e-151
Seed ortholog score540.8
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927520.20905-UTR-E-siliculosus-1a_F_contig1019:11486..117971622927520.20905-UTR-E-siliculosus-1a_F_contig1019:11486..11797Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1019 11487..11797 +
1696318565.6524837-UTR-E-siliculosus-1a_F_contig1019:11486..117971696318565.6524837-UTR-E-siliculosus-1a_F_contig1019:11486..11797Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1019 11487..11797 +
1622927520.26173-UTR-E-siliculosus-1a_F_contig1019:14778..148471622927520.26173-UTR-E-siliculosus-1a_F_contig1019:14778..14847Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1019 14779..14847 +
1696318565.7004802-UTR-E-siliculosus-1a_F_contig1019:14778..148471696318565.7004802-UTR-E-siliculosus-1a_F_contig1019:14778..14847Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1019 14779..14847 +
1622927520.2754247-UTR-E-siliculosus-1a_F_contig1019:14902..161621622927520.2754247-UTR-E-siliculosus-1a_F_contig1019:14902..16162Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1019 14903..16162 +
1696318565.7170968-UTR-E-siliculosus-1a_F_contig1019:14902..161621696318565.7170968-UTR-E-siliculosus-1a_F_contig1019:14902..16162Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1019 14903..16162 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927520.2201974-CDS-E-siliculosus-1a_F_contig1019:11797..119891622927520.2201974-CDS-E-siliculosus-1a_F_contig1019:11797..11989Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1019 11798..11989 +
1696318565.6646278-CDS-E-siliculosus-1a_F_contig1019:11797..119891696318565.6646278-CDS-E-siliculosus-1a_F_contig1019:11797..11989Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1019 11798..11989 +
1622927520.229673-CDS-E-siliculosus-1a_F_contig1019:13099..133661622927520.229673-CDS-E-siliculosus-1a_F_contig1019:13099..13366Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1019 13100..13366 +
1696318565.6727252-CDS-E-siliculosus-1a_F_contig1019:13099..133661696318565.6727252-CDS-E-siliculosus-1a_F_contig1019:13099..13366Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1019 13100..13366 +
1622927520.2402184-CDS-E-siliculosus-1a_F_contig1019:14008..140681622927520.2402184-CDS-E-siliculosus-1a_F_contig1019:14008..14068Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1019 14009..14068 +
1696318565.6824222-CDS-E-siliculosus-1a_F_contig1019:14008..140681696318565.6824222-CDS-E-siliculosus-1a_F_contig1019:14008..14068Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1019 14009..14068 +
1622927520.2495751-CDS-E-siliculosus-1a_F_contig1019:14484..147781622927520.2495751-CDS-E-siliculosus-1a_F_contig1019:14484..14778Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1019 14485..14778 +
1696318565.68995-CDS-E-siliculosus-1a_F_contig1019:14484..147781696318565.68995-CDS-E-siliculosus-1a_F_contig1019:14484..14778Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1019 14485..14778 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1019.178.1prot_E-siliculosus-1a_F_contig1019.178.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1019 11798..14778 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1019.178.1

>prot_E-siliculosus-1a_F_contig1019.178.1 ID=prot_E-siliculosus-1a_F_contig1019.178.1|Name=mRNA_E-siliculosus-1a_F_contig1019.178.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=271bp
MAAGAIPSCSAMTASTEAATAGADGNSRHLEGEDITVYQYKICPFCNKLK
VVMDFLGIPYSVTEVNPLTKKEIKFSEDYRKVPIVRMGGELFKDSPVIID
ELIARLRETKVMSDEEHAVFCSSDAKKWAEWADKQLAVLLFPNLTRNFSE
SYQAFSYVNDVDTFSMMDKVSNQVIGSAAMWAAQGKIKKKYNIDDEREAL
FSAIKDWTDALGEVDGPFFGGDRPNLGDLCVFGCIRAIEGLDTHKDVLAR
QGVGAWYQSMVSTLDYAPSA*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1019:11487..16162+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1019.178.1 ID=mRNA_E-siliculosus-1a_F_contig1019.178.1|Name=mRNA_E-siliculosus-1a_F_contig1019.178.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4676bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1019:11487..16162+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TCACCGACTACTGCGAGCATCGGGACGAGTGGCCGTCTCGCAGCGACATG
TGCTCGGTGCTGGTAAGCTTTCGCCCCTGAGTCAGGTAGACAGAGTGGGA
ATGGGGGATGCCGATCGATCGTGTGCGCCATGTGCACACCTGATGCATCA
GGATTAGCATTCTGATCTCAACTGACAACAGCATCAGCGAGGACGCGAGG
ACTTGCAAAGAACCCTTAATCCCCACCGTTCACTGGCATTCCCCACTACC
ATGCCACCCTGCAGTCGGTGGTGCCGGGCTTTGCGTTTCAACAGTAGCCA
TCCACAGGCAAATGGCGGCGGGGGCAATCCCGTCTTGCTCCGCGATGACT
GCGTCAACAGAAGCAGCAACCGCAGGGGCAGACGGCAACAGCAGGCACTT
GGAAGGGGAAGACATTACGGTGTACCAGTACAAGATATGCCCATTCTGCA
ACAAGCTCAAGGTGGTGATGGACTTTCTGGGCATCCCGTACTCTGTCACA
GAGGTAAAGTCAAAGCTTTCGGCCGCAAAACACACACTATGCAGAATGGT
AAGGCCCCTGTTGTGAGCTCCGCAAAACAACAGCAGTTGCTACCGAACAC
CGAGTGTCATACCCTCGGTGCCGTTGTTATCGAATACTTTGCTTCGTGTT
GCCTTGTACTGCTCGTACAAGATGACGAGTTCGGGTTGAAGAGGTTAAAA
ACTAATCACCCACGTGACACACGGTTCGTCAGTTACAGCTCGTGGTTTCC
AGCACGCTCACAAACCAATGGCACATGCACACCTTCCTGAACAAGAGACT
TGCTTGGCTGGATTGGAACATGTACACCGATCGGTACAGAGGTCCCCTTG
CATTGTATACGTGAGAGCCAATATGCATATGAATATTGTAACTCTTGTCG
TGAACACGGGGAACGCGCCTGATGATCTCGGGTCCCTTCGACACCTGTGA
GAAAAAACGAAAAAAAAAAAAACGCCCCCGTTTCCGTGGTTTATCAGGGT
TTCTCAATGCGCAGGGCTGTTTTATCAGACTCTGGTGCGATGCATCTATC
TCTTCTGTATGCATATAAGAGAATCAAATACGGTTGTGTGGCAAAACTCG
AGCATGGTGCGCAAAAGGTGTGTGCCACAAATTGAGCCGACTACTCTATT
AATAGCACGCTTTACCAAATGCCCGTCCCCGCAGTGGCGCATACAAGGTT
GCACTTTGTGGCACAGCAGATGCGCCGGTTGACAAAAACCAAATACAAGT
TTTGCTGCGCGTGGCTGTTTTTGGGAGTAGCGGGTGAAAAAGACGTTTTG
TTCAACTTTTGGTGACAAAGCTCCTCCTGTCCTCCAACTGCCCACCCTCG
ACCCTGTTGCCAACCCAGCGCAGTAGCAACAACGACCGGTTTGTCACGTT
GAATCGCTGAAGAAATGATGCCATCCTCACAATGCTGCAGAACCCCCCCA
CGTAGCCTGGGCCTGCGAAAACCCGGCCTATCGCTCGGTCCCGGCATTAT
TATAGGGGTGCGAGGTCAATGGCCTAACGACTACGGCATGCGTGCAACTG
AGTACCCCCCCCCTTCCACCGAAAAGAAGCGCGCCCCCACAAAAAAAAAA
AAAATGTGTCCAGGTGAACCCGCTGACGAAAAAGGAGATCAAGTTCTCGG
AAGACTACCGGAAAGTCCCCATCGTTCGCATGGGCGGGGAGCTGTTCAAG
GATTCGCCGGTCATCATAGATGAGCTCATCGCCCGCCTGCGGGAGACGAA
GGTGATGTCGGACGAGGAGCACGCTGTGTTCTGCTCATCGGACGCCAAGA
AGTGGGCGGAGTGGGCAGACAAGCAGCTCGCCGTGTTGCTGTTCCCGAAC
CTCACCCGAAATTTCTCGGAATCGTACCAGGTGAGGGGGATGTATTTCCT
CGTCGGGAGAGGGGGAGGTATACTGCATGCCTTGGAGGTTAGACCATTGA
TCACGCGTCCTCGAGAGGACGGAGCGTTTTGCACAGGAGGGGAGAACAGA
GATAGAAACTCGGGGGTTGCTGTGGCGTTGTCAATAGTTCTCGGCTCCCG
AACGCGTAGGAACGGACGGGTGGACGAGCAAGCAGTACTGGTGTCCGCGT
ATCACATCGGGAAGAGAGGTCTCGTTCAATGGTTCCATAGAGAAGTAGTT
ATTTCCCCCGTAAAGGTTGTATGCCCCCCGCCTCCTGTTGGATAGAGTGC
CAACATGTGGGTAACACAAGCGCTTATTTCGCTTTTTCCCCCGCCGGTTT
GGGTGCTGGAGTAGCTCGAAAATGGCGTTGTCTAGCCTTCCGCAACGCGA
AAGTACGGAATCCCCCAGCCTGCGCAAAAACCTACAAGTATATGTTATCT
GCTGGTTTCCTCGCAGAAGAGACAAGTTTTGAGGGTTTGCCCAAAACAAG
AGGCCCTCATCTGATGGCGCATTCTGCGCACAAAGCCTTCGCACCTTTTC
TTCCATGAGCTTCGTTGCCCCTCGTTAACCACCGGCATACTGTTTCTGTG
CGTCCACTTTGGTTGTATGCAGGCGTTTTCGTACGTGAACGACGTCGACA
CGTTCAGCATGATGGACAAGGTATCGAATCAGGTCAGTTTGTCGGCCCAC
CTTCTCTCAGATCGAAAGTGGTTGCGCTATTATCGAACGCCTTTTTTGGT
TGCCTCCGTGTGCAATGTATGTGGAGCCGATGGGTCTTGACAATAGATAG
AGAACACGCCCGCACTTAGGAACCTCTATTGTAGTTTCGGCCCAGGCTGG
GACTCCTAGTTCCTATGGTCATGGCTACGAATGGTCGCTATATAGATTTT
AGTGCAGGGGTTCTAAACGGAGCTCACAAATGGTGCGCACGTTCTTTCAT
TTTGATTTTTTTAGGCTCAATTTTTCTTAACTTATGGGTTCTTAAGTGCG
GGCGCGTTCTGTATGTGTCCCTACCCTGTGATCCTCCTCGACCCGCAGAC
CTTCATTCGCGAACATAAACCAAGCGATAAAATCATTTTCTTGGACAGGT
GATCGGGTCGGCCGCCATGTGGGCGGCGCAGGGCAAGATAAAAAAGAAGT
ACAACATCGACGACGAACGGGAAGCGCTCTTCTCAGCCATCAAGGACTGG
ACTGACGCCCTGGGAGAGGTCGACGGGCCCTTCTTCGGAGGGGACCGGCC
GAACCTCGGCGACCTTTGCGTGTTCGGGTGTATCCGGGCGATCGAGGGCT
TGGACACGCACAAGGACGTGCTCGCGAGGCAGGGCGTAGGGGCTTGGTAC
CAGAGCATGGTCTCGACGCTCGATTACGCTCCTTCAGCCTAGAAGTGTTC
GGGATTTCCGTTTTCACGCCTTAAGGCGGGAGGGAGAGGGAGAGAGAGAG
ACAGACAGACAGACAGACAGACAGACAGACCGACAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGCCTT
CTTGGTCCTCGGGTTCTTATGATCCTTCCTTAGGCCTCTCCTCTTGTCGT
TGATTTTTCGTGTGGTGTTTTTGTTTGCTTACCTTTCGAAACGCTGGCGA
ATTTGATGGTGGACGCCAAGGGCTCGGCTCACAGAGCAGGGCATGGTCTA
GAGGAAGGGCATCTGGGCGTGTGGTATATCAACCATGGTACGGACGCTAC
AATTCGCCTCTAGATCCTGGAGATGTACTAATTGGTGTATCCTTTTTCCT
GCAGTGGATAAGGAGGAACTAATAGTGTTGCCATTTTTTGTCGTCGCTTT
GATAGGTTGTCTCCGCCGAATGTTTGTCCGGCGGTCCTTCGACGCATCCC
GTCGAATTTGATTCTTGGCCGTGAGAAGAGCATGTGTAGGCACAAGAGAG
TGAAAGTTTGTATTGGCGATGGAGGCTTGCCACACGGACGAAAAGCGTGG
TCGCGAGGGAGGGCGTCGGAGCACGTGCTATGGCGTTCTCGCGCTAGAAT
GTGGTGTGGGAACCGGTGCTTTTACTGCATATGGTCGACACATAGGTTGG
CATAGTCTACAGCTGCTTGTGTCTCTCCGGTAGTAGTTCCTGGCGGGAAA
TCTTTCTAATGCTTGTCCATCGCGGAACTTGGAACCATTCTGCAGCAATT
CAATTAGATGGGGTGTGGTTTTGGGATCATGGTTCAGTGCCCTGTTCTCT
ATTAGCCCGTATTGTCAACAATGCCATGGTTGGGGTGTTGCTGCCCCCGA
CACCATCATCCTGTTCGCTTGTGTGCCGTCGGGCATATACTGGGGGCTGG
AGAAGACGGGGGGGGGGCGAGACTTCTTGACGCTGCTCTACAGCTTGGTT
CCCACCCGGAAGTACGTGTCAGTTTCGTCCTCATGCATGGCTCTGTGTGT
TGCTTGTGGCCTGCAGGATGTCGCCAGAGATGAGCAACTAAACGAAGCGC
ACAGAGTACTCGTTGACGACTTAACCGGACGTTGCCTGCCAACGTATTAT
TTGTGACTGCCTTCGGTAGCGCACGCGCGTGTTGGATCAGATGAAAGCTA
GTTTGATGCCTCGCCTGGGATTTGGTCGTAGCAGTGTGCTTCAATAAAAC
ACTTGGTAGGCGTCAATCGGTTGGGCGTTGCAAATTTGTTAATTTCGTGA
ACCTTGAATGAACTTGAAGGTTCAGTCTTGAAACCCTGACCTGTCAAAAC
AGCAGCCGCCACACATAACAAGAGCG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1019:11487..16162+

>mRNA_E-siliculosus-1a_F_contig1019.178.1 ID=mRNA_E-siliculosus-1a_F_contig1019.178.1|Name=mRNA_E-siliculosus-1a_F_contig1019.178.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1626bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1019:11487..16162+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCGGCGGGGGCAATCCCGTCTTGCTCCGCGATGACTGCGTCAACAGA
AGCAGCAACCGCAGGGGCAGACGGCAACAGCAGGCACTTGGAAGGGGAAG
ACATTACGGTGTACCAGTACAAGATATGCCCATTCTGCAACAAGCTCAAG
GTGGTGATGGACTTTCTGGGCATCCCGTACTCTGTCACAGAGATGGCGGC
GGGGGCAATCCCGTCTTGCTCCGCGATGACTGCGTCAACAGAAGCAGCAA
CCGCAGGGGCAGACGGCAACAGCAGGCACTTGGAAGGGGAAGACATTACG
GTGTACCAGTACAAGATATGCCCATTCTGCAACAAGCTCAAGGTGGTGAT
GGACTTTCTGGGCATCCCGTACTCTGTCACAGAGGTGAACCCGCTGACGA
AAAAGGAGATCAAGTTCTCGGAAGACTACCGGAAAGTCCCCATCGTTCGC
ATGGGCGGGGAGCTGTTCAAGGATTCGCCGGTCATCATAGATGAGCTCAT
CGCCCGCCTGCGGGAGACGAAGGTGATGTCGGACGAGGAGCACGCTGTGT
TCTGCTCATCGGACGCCAAGAAGTGGGCGGAGTGGGCAGACAAGCAGCTC
GCCGTGTTGCTGTTCCCGAACCTCACCCGAAATTTCTCGGAATCGTACCA
GGTGAACCCGCTGACGAAAAAGGAGATCAAGTTCTCGGAAGACTACCGGA
AAGTCCCCATCGTTCGCATGGGCGGGGAGCTGTTCAAGGATTCGCCGGTC
ATCATAGATGAGCTCATCGCCCGCCTGCGGGAGACGAAGGTGATGTCGGA
CGAGGAGCACGCTGTGTTCTGCTCATCGGACGCCAAGAAGTGGGCGGAGT
GGGCAGACAAGCAGCTCGCCGTGTTGCTGTTCCCGAACCTCACCCGAAAT
TTCTCGGAATCGTACCAGGCGTTTTCGTACGTGAACGACGTCGACACGTT
CAGCATGATGGACAAGGTATCGAATCAGGCGTTTTCGTACGTGAACGACG
TCGACACGTTCAGCATGATGGACAAGGTATCGAATCAGGTGATCGGGTCG
GCCGCCATGTGGGCGGCGCAGGGCAAGATAAAAAAGAAGTACAACATCGA
CGACGAACGGGAAGCGCTCTTCTCAGCCATCAAGGACTGGACTGACGCCC
TGGGAGAGGTCGACGGGCCCTTCTTCGGAGGGGACCGGCCGAACCTCGGC
GACCTTTGCGTGTTCGGGTGTATCCGGGCGATCGAGGGCTTGGACACGCA
CAAGGACGTGCTCGCGAGGCAGGGCGTAGGGGCTTGGTACCAGAGCATGG
TCTCGACGCTCGATTACGCTCCTTCAGCCTAGGTGATCGGGTCGGCCGCC
ATGTGGGCGGCGCAGGGCAAGATAAAAAAGAAGTACAACATCGACGACGA
ACGGGAAGCGCTCTTCTCAGCCATCAAGGACTGGACTGACGCCCTGGGAG
AGGTCGACGGGCCCTTCTTCGGAGGGGACCGGCCGAACCTCGGCGACCTT
TGCGTGTTCGGGTGTATCCGGGCGATCGAGGGCTTGGACACGCACAAGGA
CGTGCTCGCGAGGCAGGGCGTAGGGGCTTGGTACCAGAGCATGGTCTCGA
CGCTCGATTACGCTCCTTCAGCCTAG
back to top