prot_E-siliculosus-1a_F_contig12892.1767.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig12892.1767.1
Unique Nameprot_E-siliculosus-1a_F_contig12892.1767.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length296
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig12892.1767.1 vs. uniprot
Match: D8LPV6_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV6_ECTSI)

HSP 1 Score: 251 bits (640), Expect = 2.180e-78
Identity = 216/254 (85.04%), Postives = 217/254 (85.43%), Query Frame = 0 
Query:    1 MVQDLVFGRKNRSKSVFSPAKGTGVTATWLKDKNARVAMSKGGVGAGEGHGGSAGRYQSVPSPSYADSSGHGXXXXXXXXXXXXXXXAPATVPSWTDAGGSHSSRTAARAGGGSNADPDSNATTPRSGADSLTPLGAAVPPRLSSSPREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPVEPGGRNNSGSSIENGSRXXXXXXXXXXXXXXXX---------DGDDVGRGSGSIDSLATDTAASSLHGYG 245
            MVQDLVFGR+NRSKSVFSPAKG GVTATWLKDKNARVAMSKGGVGAGEGHGG   RYQSVPSPSYADSSGHGXXXXXXXXXXXXXXXAPATVPSWTDAGGSHSSRTAARAGGGSNADPDSNATTPRSGADSLTPLGAAVPPRLSSSPREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                    XXXXXXXXXXXXXX             DDVGRGSGSIDSLATDTAASSLHGYG
Sbjct:    1 MVQDLVFGRRNRSKSVFSPAKGAGVTATWLKDKNARVAMSKGGVGAGEGHGG---RYQSVPSPSYADSSGHGXXXXXXXXXXXXXXXAPATVPSWTDAGGSHSSRTAARAGGGSNADPDSNATTPRSGADSLTPLGAAVPPRLSSSPREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHRVRXXXXXXXXDDVGRGSGSIDSLATDTAASSLHGYG 251
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BLAST of mRNA_E-siliculosus-1a_F_contig12892.1767.1 vs. uniprot
Match: A0A6H5KU66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU66_9PHAE)

HSP 1 Score: 209 bits (532), Expect = 7.790e-59
Identity = 221/311 (71.06%), Postives = 226/311 (72.67%), Query Frame = 0 
Query:    1 MVQDLVFGRKNRSKSVFSPAKGTGVTATWLKDKNARVAMSKGGVGAGEGHGGSAGRYQSVPSPSYADSSGHGXXXXXXXXXXXXXXXAPATVPSWTDAGGSHSSRTAARAGGGSNADPDSNATTPRSGADSLTPLGAAVPPRLSSSPREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPVEPGGRNNSGSSIENGSRXXXXXXXXXXXXXXXXDG---------------DDVGRGSGSIDSLATDTAASSLHGYGXXXXXXXXXXXXXXXXXXXXXPGLDGVXXXXXXXXXXXXXXAGGARGAATP 296
            +VQ+LVFGRKNRSKSVFSPAKGTGVTATWLKDKNARVA+SKGG GAGEGH GSAGRYQSVPSPSYA+SSGHGXXXXXXXXXXX           W         RTAARAG GSNADPDSNATTPRSGADSLTPLGAAVPPRLSSSPRE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                    XXXXXXXXXXXXXXXX                 DDVGRGSGSIDSLATDTAASSLHGYGXXXX                 PGLDGV   XXXXXXXXX  AGGAR + TP
Sbjct:   50 VVQELVFGRKNRSKSVFSPAKGTGVTATWLKDKNARVAISKGGGGAGEGHRGSAGRYQSVPSPSYAESSGHGXXXXXXXXXXX-----------W---------RTAARAGDGSNADPDSNATTPRSGADSLTPLGAAVPPRLSSSPREEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDVGRGSGSIDSLATDTAASSLHGYGXXXXDWDVSKEEDGGRGGE--PGLDGVLAAXXXXXXXXXEVAGGARVSITP 338
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12892.1767.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LPV6_ECTSI2.180e-7885.04Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KU66_9PHAE7.790e-5971.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12892contigE-siliculosus-1a_F_contig12892:190..1441 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12892.1767.1mRNA_E-siliculosus-1a_F_contig12892.1767.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig12892 190..1441 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig12892.1767.1 ID=prot_E-siliculosus-1a_F_contig12892.1767.1|Name=mRNA_E-siliculosus-1a_F_contig12892.1767.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=296bp
MVQDLVFGRKNRSKSVFSPAKGTGVTATWLKDKNARVAMSKGGVGAGEGH
GGSAGRYQSVPSPSYADSSGHGSGHGSGHGSRHWSASAPATVPSWTDAGG
SHSSRTAARAGGGSNADPDSNATTPRSGADSLTPLGAAVPPRLSSSPREE
YRSGGGGGGFTPQYGSSAATTAAGSTTTEESFPVEPGGRNNSGSSIENGS
RSGRGGGGGNRGGGGGGDGDDVGRGSGSIDSLATDTAASSLHGYGGGGGG
GDWDASKEEDGGGGGEPGLDGVLAAAAAALAAAEEGAGGARGAATP
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