mRNA_E-siliculosus-1a_F_contig12892.1767.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12892.1767.1
Unique NamemRNA_E-siliculosus-1a_F_contig12892.1767.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig12892.1767.1 vs. uniprot
Match: D8LPV6_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV6_ECTSI)

HSP 1 Score: 251 bits (640), Expect = 2.180e-78
Identity = 216/254 (85.04%), Postives = 217/254 (85.43%), Query Frame = 1 
Query:    1 MVQDLVFGRKNRSKSVFSPAKGTGVTATWLKDKNARVAMSKGGVGAGEGHGGSAGRYQSVPSPSYADSSGHGXXXXXXXXXXXXXXXAPATVPSWTDAGGSHSSRTAARAGGGSNADPDSNATTPRSGADSLTPLGAAVPPRLSSSPREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPVEPGGRNNSGSSIENGSRXXXXXXXXXXXXXXXX---------DGDDVGRGSGSIDSLATDTAASSLHGYG 735
            MVQDLVFGR+NRSKSVFSPAKG GVTATWLKDKNARVAMSKGGVGAGEGHGG   RYQSVPSPSYADSSGHGXXXXXXXXXXXXXXXAPATVPSWTDAGGSHSSRTAARAGGGSNADPDSNATTPRSGADSLTPLGAAVPPRLSSSPREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                    XXXXXXXXXXXXXX             DDVGRGSGSIDSLATDTAASSLHGYG
Sbjct:    1 MVQDLVFGRRNRSKSVFSPAKGAGVTATWLKDKNARVAMSKGGVGAGEGHGG---RYQSVPSPSYADSSGHGXXXXXXXXXXXXXXXAPATVPSWTDAGGSHSSRTAARAGGGSNADPDSNATTPRSGADSLTPLGAAVPPRLSSSPREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHRVRXXXXXXXXDDVGRGSGSIDSLATDTAASSLHGYG 251
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BLAST of mRNA_E-siliculosus-1a_F_contig12892.1767.1 vs. uniprot
Match: A0A6H5KU66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU66_9PHAE)

HSP 1 Score: 209 bits (532), Expect = 7.790e-59
Identity = 221/311 (71.06%), Postives = 226/311 (72.67%), Query Frame = 1 
Query:    1 MVQDLVFGRKNRSKSVFSPAKGTGVTATWLKDKNARVAMSKGGVGAGEGHGGSAGRYQSVPSPSYADSSGHGXXXXXXXXXXXXXXXAPATVPSWTDAGGSHSSRTAARAGGGSNADPDSNATTPRSGADSLTPLGAAVPPRLSSSPREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPVEPGGRNNSGSSIENGSRXXXXXXXXXXXXXXXXDG---------------DDVGRGSGSIDSLATDTAASSLHGYGXXXXXXXXXXXXXXXXXXXXXPGLDGVXXXXXXXXXXXXXXAGGARGAATP 888
            +VQ+LVFGRKNRSKSVFSPAKGTGVTATWLKDKNARVA+SKGG GAGEGH GSAGRYQSVPSPSYA+SSGHGXXXXXXXXXXX           W         RTAARAG GSNADPDSNATTPRSGADSLTPLGAAVPPRLSSSPRE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                    XXXXXXXXXXXXXXXX                 DDVGRGSGSIDSLATDTAASSLHGYGXXXX                 PGLDGV   XXXXXXXXX  AGGAR + TP
Sbjct:   50 VVQELVFGRKNRSKSVFSPAKGTGVTATWLKDKNARVAISKGGGGAGEGHRGSAGRYQSVPSPSYAESSGHGXXXXXXXXXXX-----------W---------RTAARAGDGSNADPDSNATTPRSGADSLTPLGAAVPPRLSSSPREEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDVGRGSGSIDSLATDTAASSLHGYGXXXXDWDVSKEEDGGRGGE--PGLDGVLAAXXXXXXXXXEVAGGARVSITP 338
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12892.1767.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LPV6_ECTSI2.180e-7885.04Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KU66_9PHAE7.790e-5971.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12892contigE-siliculosus-1a_F_contig12892:190..1441 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size888
Model size888
Exons2
Ec32 orthologEc-02_004240.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927810.0053163-CDS-E-siliculosus-1a_F_contig12892:189..4431622927810.0053163-CDS-E-siliculosus-1a_F_contig12892:189..443Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12892 190..443 +
1696318689.0719383-CDS-E-siliculosus-1a_F_contig12892:189..4431696318689.0719383-CDS-E-siliculosus-1a_F_contig12892:189..443Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12892 190..443 +
1622927810.016336-CDS-E-siliculosus-1a_F_contig12892:807..14411622927810.016336-CDS-E-siliculosus-1a_F_contig12892:807..1441Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12892 808..1441 +
1696318689.0816386-CDS-E-siliculosus-1a_F_contig12892:807..14411696318689.0816386-CDS-E-siliculosus-1a_F_contig12892:807..1441Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12892 808..1441 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12892.1767.1prot_E-siliculosus-1a_F_contig12892.1767.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12892 190..1441 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12892.1767.1

>prot_E-siliculosus-1a_F_contig12892.1767.1 ID=prot_E-siliculosus-1a_F_contig12892.1767.1|Name=mRNA_E-siliculosus-1a_F_contig12892.1767.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=296bp
MVQDLVFGRKNRSKSVFSPAKGTGVTATWLKDKNARVAMSKGGVGAGEGH
GGSAGRYQSVPSPSYADSSGHGSGHGSGHGSRHWSASAPATVPSWTDAGG
SHSSRTAARAGGGSNADPDSNATTPRSGADSLTPLGAAVPPRLSSSPREE
YRSGGGGGGFTPQYGSSAATTAAGSTTTEESFPVEPGGRNNSGSSIENGS
RSGRGGGGGNRGGGGGGDGDDVGRGSGSIDSLATDTAASSLHGYGGGGGG
GDWDASKEEDGGGGGEPGLDGVLAAAAAALAAAEEGAGGARGAATP
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mRNA from alignment at E-siliculosus-1a_F_contig12892:190..1441+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12892.1767.1 ID=mRNA_E-siliculosus-1a_F_contig12892.1767.1|Name=mRNA_E-siliculosus-1a_F_contig12892.1767.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1252bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12892:190..1441+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTGCAAGACCTAGTTTTCGGCCGAAAAAACAGGAGCAAGTCGGTCTT
CAGCCCCGCGAAGGGGACCGGGGTCACCGCGACGTGGCTTAAGGACAAGA
ACGCCAGGGTAGCCATGTCCAAAGGCGGCGTCGGCGCAGGGGAAGGGCAC
GGCGGGAGTGCCGGGCGCTACCAATCAGTGCCGAGCCCGAGCTATGCAGA
CTCCAGCGGACATGGCAGCGGGCACGGCAGTGGGCACGGAAGCAGACACT
GGAGGTGAGAATCGGTTCGAGAGTACGGCGTGGCTTGTATGCATCGTGTA
GAACCGCACTAGATTTCCGTGACTTTTCACACGACCGGGTGCGCTTTGTA
GTGGAGTGTTTACTATTTTTGATATTTTCTAGGTTCGTTTCGAAGTTCCG
TTGTCGCAAGGGTAGCGTACGCATGGCAGATCTCTCTGCTCGACTGTCGT
AGGACGCGTGCGTCTACCTTCGTAACCGACTCTCGATCGAGCATCCTCTC
ACACGCTAAGTCGGTTTTCACACACAAACGACACGCGCCCATACTTGCAC
CAACCCAGCCGACGCGACATCAACCGCCCCCCCCCCCCAATGTCGTCGAT
CCTGATTCCTACCCAAAGCGCAAGTGCACCCGCCACGGTGCCTTCTTGGA
CCGACGCTGGCGGATCTCATTCCAGCAGGACCGCCGCGAGAGCCGGGGGC
GGCAGCAACGCGGACCCGGACTCGAACGCCACAACGCCCCGGAGCGGGGC
GGACAGCCTGACACCGCTGGGGGCGGCCGTCCCTCCCAGGCTCTCCTCCT
CCCCGAGAGAGGAGTACCGCAGCGGCGGCGGCGGCGGCGGCTTCACACCG
CAGTACGGGTCGTCGGCCGCTACCACCGCCGCCGGGTCGACGACGACGGA
GGAATCCTTTCCGGTGGAGCCCGGCGGGCGCAACAACTCCGGCAGCAGCA
TCGAGAACGGTAGCAGGAGCGGCCGGGGCGGCGGCGGTGGAAACAGAGGT
GGCGGCGGCGGCGGCGACGGCGACGACGTGGGCCGGGGCTCGGGCTCGAT
CGATTCGCTTGCCACGGACACGGCGGCGTCTAGCCTGCACGGCTACGGCG
GGGGCGGGGGCGGCGGCGACTGGGACGCCTCCAAGGAGGAGGACGGCGGG
GGGGGGGGGGAGCCGGGGCTGGACGGGGTGTTGGCGGCGGCGGCGGCGGC
CCTGGCTGCCGCGGAGGAGGGGGCGGGGGGGGCGCGGGGGGCCGCCACCC
CC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12892:190..1441+

>mRNA_E-siliculosus-1a_F_contig12892.1767.1 ID=mRNA_E-siliculosus-1a_F_contig12892.1767.1|Name=mRNA_E-siliculosus-1a_F_contig12892.1767.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1776bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12892:190..1441+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTGCAAGACCTAGTTTTCGGCCGAAAAAACAGGAGCAAGTCGGTCTT
CAGCCCCGCGAAGGGGACCGGGGTCACCGCGACGTGGCTTAAGGACAAGA
ACGCCAGGGTAGCCATGTCCAAAGGCGGCGTCGGCGCAGGGGAAGGGCAC
GGCGGGAGTGCCGGGCGCTACCAATCAGTGCCGAGCCCGAGCTATGCAGA
CTCCAGCGGACATGGCAGCGGGCACGGCAGTGGGCACGGAAGCAGACACT
GGAGATGGTGCAAGACCTAGTTTTCGGCCGAAAAAACAGGAGCAAGTCGG
TCTTCAGCCCCGCGAAGGGGACCGGGGTCACCGCGACGTGGCTTAAGGAC
AAGAACGCCAGGGTAGCCATGTCCAAAGGCGGCGTCGGCGCAGGGGAAGG
GCACGGCGGGAGTGCCGGGCGCTACCAATCAGTGCCGAGCCCGAGCTATG
CAGACTCCAGCGGACATGGCAGCGGGCACGGCAGTGGGCACGGAAGCAGA
CACTGGAGCGCAAGTGCACCCGCCACGGTGCCTTCTTGGACCGACGCTGG
CGGATCTCATTCCAGCAGGACCGCCGCGAGAGCCGGGGGCGGCAGCAACG
CGGACCCGGACTCGAACGCCACAACGCCCCGGAGCGGGGCGGACAGCCTG
ACACCGCTGGGGGCGGCCGTCCCTCCCAGGCTCTCCTCCTCCCCGAGAGA
GGAGTACCGCAGCGGCGGCGGCGGCGGCGGCTTCACACCGCAGTACGGGT
CGTCGGCCGCTACCACCGCCGCCGGGTCGACGACGACGGAGGAATCCTTT
CCGGTGGAGCCCGGCGGGCGCAACAACTCCGGCAGCAGCATCGAGAACGG
TAGCAGGAGCGGCCGGGGCGGCGGCGGTGGAAACAGAGGTGGCGGCGGCG
GCGGCGACGGCGACGACGTGGGCCGGGGCTCGGGCTCGATCGATTCGCTT
GCCACGGACACGGCGGCGTCTAGCCTGCACGGCTACGGCGGGGGCGGGGG
CGGCGGCGACTGGGACGCCTCCAAGGAGGAGGACGGCGGGGGGGGGGGGG
AGCCGGGGCTGGACGGGGTGTTGGCGGCGGCGGCGGCGGCCCTGGCTGCC
GCGGAGGAGGGGGCGGGGGGGGCGCGGGGGGCCGCCACCCCCCGCAAGTG
CACCCGCCACGGTGCCTTCTTGGACCGACGCTGGCGGATCTCATTCCAGC
AGGACCGCCGCGAGAGCCGGGGGCGGCAGCAACGCGGACCCGGACTCGAA
CGCCACAACGCCCCGGAGCGGGGCGGACAGCCTGACACCGCTGGGGGCGG
CCGTCCCTCCCAGGCTCTCCTCCTCCCCGAGAGAGGAGTACCGCAGCGGC
GGCGGCGGCGGCGGCTTCACACCGCAGTACGGGTCGTCGGCCGCTACCAC
CGCCGCCGGGTCGACGACGACGGAGGAATCCTTTCCGGTGGAGCCCGGCG
GGCGCAACAACTCCGGCAGCAGCATCGAGAACGGTAGCAGGAGCGGCCGG
GGCGGCGGCGGTGGAAACAGAGGTGGCGGCGGCGGCGGCGACGGCGACGA
CGTGGGCCGGGGCTCGGGCTCGATCGATTCGCTTGCCACGGACACGGCGG
CGTCTAGCCTGCACGGCTACGGCGGGGGCGGGGGCGGCGGCGACTGGGAC
GCCTCCAAGGAGGAGGACGGCGGGGGGGGGGGGGAGCCGGGGCTGGACGG
GGTGTTGGCGGCGGCGGCGGCGGCCCTGGCTGCCGCGGAGGAGGGGGCGG
GGGGGGCGCGGGGGGCCGCCACCCCC
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