Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 348 |
| Model size | 629 |
| Exons | 1 |
| Ec32 ortholog | Ec-04_004220.1 |
| Ec32 ortholog description | Hypothetical protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927518.3746173-CDS-E-siliculosus-1a_F_contig1017:1523..1871 | 1622927518.3746173-CDS-E-siliculosus-1a_F_contig1017:1523..1871 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1017 1524..1871 - |
| 1696318564.6716597-CDS-E-siliculosus-1a_F_contig1017:1523..1871 | 1696318564.6716597-CDS-E-siliculosus-1a_F_contig1017:1523..1871 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1017 1524..1871 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927518.3861835-UTR-E-siliculosus-1a_F_contig1017:1871..2152 | 1622927518.3861835-UTR-E-siliculosus-1a_F_contig1017:1871..2152 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1017 1872..2152 - |
| 1696318564.683574-UTR-E-siliculosus-1a_F_contig1017:1871..2152 | 1696318564.683574-UTR-E-siliculosus-1a_F_contig1017:1871..2152 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1017 1872..2152 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1017.166.1 >prot_E-siliculosus-1a_F_contig1017.166.1 ID=prot_E-siliculosus-1a_F_contig1017.166.1|Name=mRNA_E-siliculosus-1a_F_contig1017.166.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=116bp
MIQTRTHCGGPASINTTLPYRHDTPKDPKNAKISYNTRPTHRRPTHRITT
QQQHLAHPHIPRKAETAPAPPLSPSRQKPHTPPPTTETRALHAQAEHTGS
RAFYVPSPRTTCVCV* back to topmRNA from alignment at E-siliculosus-1a_F_contig1017:1524..2152- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1017.166.1 ID=mRNA_E-siliculosus-1a_F_contig1017.166.1|Name=mRNA_E-siliculosus-1a_F_contig1017.166.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=629bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1017:1524..2152- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTCAAAATCCATCCTGGGTGTGTCATGGCTAGGCCCTCCCTCGGCAAG
ACTAGCAAAATTTTATCGCGAAAGGGGAAATTGGCTAGGCGGGTGCCTAA
AAAAAAAACGCTTGCCCAAAACTTCTGCACGGAAACAAAAGGAGAAAACA
GCGGCGTAATCGATTTGGTACGAAAATAGAGATTCTACAGGAAAAAAAAA
AAAAAAACGACCAAGAAGGACTACAGCACGCAACCCCTTACCGCACGGCA
GGACGCAAAAAGTCACGAAAATCAGACACATATGATACAAACACGCACAC
ATTGCGGCGGCCCCGCCTCTATCAACACGACGCTACCGTACCGACACGAC
ACACCCAAAGACCCAAAAAACGCCAAGATATCGTACAATACGCGCCCCAC
ACACAGGCGACCGACACACCGTATCACCACCCAACAACAACACTTGGCAC
ACCCTCATATCCCGCGGAAGGCGGAGACAGCGCCTGCTCCCCCCCTCTCC
CCTTCTCGACAAAAACCGCACACCCCGCCTCCAACCACCGAAACCCGCGC
GCTACATGCACAAGCGGAACACACCGGCTCGAGGGCGTTTTACGTACCTT
CCCCGCGCACAACGTGTGTGTGTGTGTGA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1017:1524..2152- >mRNA_E-siliculosus-1a_F_contig1017.166.1 ID=mRNA_E-siliculosus-1a_F_contig1017.166.1|Name=mRNA_E-siliculosus-1a_F_contig1017.166.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=696bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1017:1524..2152- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGATACAAACACGCACACATTGCGGCGGCCCCGCCTCTATCAACACGAC
GCTACCGTACCGACACGACACACCCAAAGACCCAAAAAACGCCAAGATAT
CGTACAATACGCGCCCCACACACAGGCGACCGACACACCGTATCACCACC
CAACAACAACACTTGGCACACCCTCATATCCCGCGGAAGGCGGAGACAGC
GCCTGCTCCCCCCCTCTCCCCTTCTCGACAAAAACCGCACACCCCGCCTC
CAACCACCGAAACCCGCGCGCTACATGCACAAGCGGAACACACCGGCTCG
AGGGCGTTTTACGTACCTTCCCCGCGCACAACGTGTGTGTGTGTGTGAAT
GATACAAACACGCACACATTGCGGCGGCCCCGCCTCTATCAACACGACGC
TACCGTACCGACACGACACACCCAAAGACCCAAAAAACGCCAAGATATCG
TACAATACGCGCCCCACACACAGGCGACCGACACACCGTATCACCACCCA
ACAACAACACTTGGCACACCCTCATATCCCGCGGAAGGCGGAGACAGCGC
CTGCTCCCCCCCTCTCCCCTTCTCGACAAAAACCGCACACCCCGCCTCCA
ACCACCGAAACCCGCGCGCTACATGCACAAGCGGAACACACCGGCTCGAG
GGCGTTTTACGTACCTTCCCCGCGCACAACGTGTGTGTGTGTGTGA back to top
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