mRNA_E-siliculosus-1a_F_contig10151.160.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_E-siliculosus-1a_F_contig10151.160.1 vs. uniprot
Match: D7FJ76_ECTSI (Ferric reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ76_ECTSI)

HSP 1 Score: 366 bits (939), Expect = 6.800e-123
Identity = 242/339 (71.39%), Postives = 252/339 (74.34%), Query Frame = 1

Query:    1 TSQSVSSDFFLMVGSDAAVGLPDESAVVEYDLIVRTVAGVVPPKAQDITGDSVGQDVSGTTLSFTRPLAPANKQAISGTPGDETIFIYAFGEDNELAFHGLAPNRGSLVLDLFCGDG---DGATVAGTPAPTVGGTPAASEASSAAPIDTDTPTAAPTM----------------------------------AVSRTPPSSTLSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTGTAGMTGSETMAPSAADGDRGVDVPGDTGAPTDASDSLLMTESPSSAGEGLVEEETDGALRVGGGGRWAAAAATGFVTVLAVLSSL 906
            TS   SSD  +M+GSDA +GLPDESAV EYDLI +T AGV+P   QDITG SV QD SGTTLSFTRPLAPANKQAISGTPGDETIF+YAFG DNEL FHGLAPNRGSLVLDLFCGDG   DGATVAGTPAPTVGGTP ASEASSAAPI  DTPTAAPT                                   AVS TPPSSTLS+ XXXXXXXXXXXXXXXXXXX                         PTG AGMTGSETMAPSAADGDRGVDVPG+T APTDASDSLL+TESPS+AGEGLVEEETDGALRVGGGGRWAAAAATGFVTVLAVLSSL
Sbjct:   72 TSLGFSSDL-MMIGSDAVIGLPDESAVEEYDLISQTTAGVLPSATQDITGGSVSQDASGTTLSFTRPLAPANKQAISGTPGDETIFLYAFGGDNELGFHGLAPNRGSLVLDLFCGDGGDGDGATVAGTPAPTVGGTPTASEASSAAPIAADTPTAAPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVSGTPPSSTLSVAXXXXXXXXXXXXXXXXXXXGVEGSTSS-----------------PTGAAGMTGSETMAPSAADGDRGVDVPGETRAPTDASDSLLITESPSAAGEGLVEEETDGALRVGGGGRWAAAAATGFVTVLAVLSSL 392

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BLAST of mRNA_E-siliculosus-1a_F_contig10151.160.1 vs. uniprot
Match: A0A6H5JN46_9PHAE (DOMON domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN46_9PHAE)

HSP 1 Score: 339 bits (870), Expect = 1.190e-112
Identity = 236/307 (76.87%), Postives = 242/307 (78.83%), Query Frame = 1

Query:    1 TSQSVSSDFFLMVGSDAAVGLPDESAVVEYDLIVRTVAGVVPPKAQDITGDSVGQDVSGTTLSFTRPLAPANKQAISGTPGDETIFIYAFGEDNELAFHGLAPNRGSLVLDLFCGDG-DGATVAGTPAPTVGGTPAASEASSAAPIDTDTPTAAPTMAVSRTPPSSTLSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTGTAGM----TGSETMAPSAADGDRGVDVPGDTGAPTDASDSLLMTESPSSAGEGLVEEETDGALRVGGGGRWAAAAATGFVTVLAVLSSL 906
            TS   SSD   MVGSDA +GLP+ES V EYDL    +AGVV    QDITG SV QD SGTTLSFTRPLAPANKQAISGTPGDETIFIYAFGE NELAFHG APNRG L LDLFCG+G DGATVAGTPAPT      ASEASS API  DT TAAPTMAVS TPPSSTLSM            XXXXXXXXXXXXXXXXXXXXXXXXXXXX      T         TGSETMAPSAADGDRGVDVPG+TGAPTDASDSL MTESPSSAGEG V+EETDGALRVGGGGRWAAAAATGFVTVLAVLSSL
Sbjct:   72 TSLGFSSDLS-MVGSDAVIGLPEESTVEEYDLTSHALAGVVLSSTQDITGGSVSQDASGTTLSFTRPLAPANKQAISGTPGDETIFIYAFGEGNELAFHGQAPNRGDLTLDLFCGEGGDGATVAGTPAPTXXXXXXASEASSTAPIAADTLTAAPTMAVSGTPPSSTLSMAPTTVETETGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGVEASTXXXXXXXXXTGSETMAPSAADGDRGVDVPGETGAPTDASDSLRMTESPSSAGEGPVDEETDGALRVGGGGRWAAAAATGFVTVLAVLSSL 377

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BLAST of mRNA_E-siliculosus-1a_F_contig10151.160.1 vs. uniprot
Match: D7FYB8_ECTSI (Ferric reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYB8_ECTSI)

HSP 1 Score: 181 bits (460), Expect = 3.400e-52
Identity = 91/125 (72.80%), Postives = 98/125 (78.40%), Query Frame = 1

Query:   34 MVGSDAAVGLPDESAVVEYDLIVRTVAGVVPPKAQDITGDSVGQDVSGTTLSFTRPLAPANKQAISGTPGDETIFIYAFGEDNELAFHGLAPNRGSLVLDLFCGDG----DGATVAGTPAPTVGG 396
            M+GSDA +GLPDES V EYDL  +T A V     QDITG  V QD SGTTLSFTRPLAP NKQAISGTPGDETIF++AFG DNEL +HGL PNRGSLVLDLFCGDG    D  TV GTPAPT+GG
Sbjct:    1 MIGSDAVIGLPDESTVEEYDLTSQTTARVFSSATQDITGGLVSQDASGTTLSFTRPLAPTNKQAISGTPGDETIFLFAFGADNELGYHGLPPNRGSLVLDLFCGDGGDGSDDVTVVGTPAPTLGG 125

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BLAST of mRNA_E-siliculosus-1a_F_contig10151.160.1 vs. uniprot
Match: D7FJ77_ECTSI (Ferric reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ77_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 1.570e-19
Identity = 69/149 (46.31%), Postives = 83/149 (55.70%), Query Frame = 1

Query:   34 MVGSDAAVGLPDESAVVEYDLIVRTVAGVVPPKAQDITGDSVGQDVSGTTLSFTRPLAPA-NKQAISGTPGDETIFIYAFGEDNELAFHGLAPNRGSLVLDLFCGDGDGATVAGTPAPTV--GGTPAASEASSAAPIDTDTPTAAPTMA 471
            +VGSD  +GLPD S+V+EY+++  T   VV  + QDIT  S+ Q    TTLSF RPL+P  NKQ IS   GD T  I+  G DNEL         G  V DL+CG G  A +A TPAPTV  GGT            +T  PT APT A
Sbjct:   82 LVGSDVIIGLPDNSSVLEYEVLGETAEEVVVFEQQDITEASIVQADGSTTLSFIRPLSPGGNKQNISYVAGDATKLIFGQGADNELGVISDVTWSGMRV-DLYCGTGGIAALARTPAPTVVGGGTG-----------ETPAPTLAPTAA 218

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BLAST of mRNA_E-siliculosus-1a_F_contig10151.160.1 vs. uniprot
Match: A0A6H5JKV6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKV6_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 7.920e-13
Identity = 46/108 (42.59%), Postives = 62/108 (57.41%), Query Frame = 1

Query:   34 MVGSDAAVGLPDESAVVEYDLIVRTVAGVVPPKAQDITGDSVGQDVSGTTLSFTRPLAPAN--KQAISGTPGDETIFIYAFGEDNELAFHGLAPNRGSL-VLDLFCGD 348
            MV +DA VGLPDE   +EYDL    ++     + Q+I+G SV Q  S TTL FTRPL+PA+  K  +S   G++  FI+A+G  N   +H     RG   V DL C +
Sbjct:   80 MVPADAVVGLPDEGTALEYDLSTYALSSDNEHETQEISGASVTQADSTTTLVFTRPLSPADDSKTVLSAEEGEKATFIWAYGSSNTFQYHEA---RGDFTVSDLLCSE 184

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_F_contig10151.160.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_F_contig10151.160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 5

ZOOM

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POSITION

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Match Name	E-value	Identity	Description
D7FJ76_ECTSI	6.800e-123	71.39	Ferric reductase n=1 Tax=Ectocarpus siliculosus Ta...	[more]
A0A6H5JN46_9PHAE	1.190e-112	76.87	DOMON domain-containing protein n=1 Tax=Ectocarpus...	[more]
D7FYB8_ECTSI	3.400e-52	72.80	Ferric reductase n=1 Tax=Ectocarpus siliculosus Ta...	[more]
D7FJ77_ECTSI	1.570e-19	46.31	Ferric reductase n=1 Tax=Ectocarpus siliculosus Ta...	[more]
A0A6H5JKV6_9PHAE	7.920e-13	42.59	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_F_contig10151	contig	E-siliculosus-1a_F_contig10151:476..1940 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-siliculosus-1a_F_contig10151:476..1940-
coding sequence from alignment at E-siliculosus-1a_F_contig10151:476..1940-

protein sequence of mRNA_E-siliculosus-1a_F_contig10151.160.1

>prot_E-siliculosus-1a_F_contig10151.160.1 ID=prot_E-siliculosus-1a_F_contig10151.160.1|Name=mRNA_E-siliculosus-1a_F_contig10151.160.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=303bp
TSQSVSSDFFLMVGSDAAVGLPDESAVVEYDLIVRTVAGVVPPKAQDITG
DSVGQDVSGTTLSFTRPLAPANKQAISGTPGDETIFIYAFGEDNELAFHG
LAPNRGSLVLDLFCGDGDGATVAGTPAPTVGGTPAASEASSAAPIDTDTP
TAAPTMAVSRTPPSSTLSMAPTTLESETGSSSAPTIAPTMVELETGSSSA
PSAAPTGVEASTSSPTGTAGMTGSETMAPSAADGDRGVDVPGDTGAPTDA
SDSLLMTESPSSAGEGLVEEETDGALRVGGGGRWAAAAATGFVTVLAVLS
SL*

mRNA from alignment at E-siliculosus-1a_F_contig10151:476..1940-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-siliculosus-1a_F_contig10151.160.1 ID=mRNA_E-siliculosus-1a_F_contig10151.160.1|Name=mRNA_E-siliculosus-1a_F_contig10151.160.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1465bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10151:476..1940- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACGAGTCAGAGCGTATCTTCTGACTTCTTCTTGATGGTCGGATCGGACGC
CGCCGTCGGCCTGCCTGACGAGTCTGCTGTCGTGGAGTACGACTTGATAG
TCAGGGTAAGAACTGGGAACAATCGCGTCGATTTGGCATGTCGAGCGACG
TTACTTAAGGTCGAAATTGCACGGTGCTGGAGAGTGAAGCTCCCTCGACA
ATGATTCACAGGTCGCGTTGTTGCCGCACGTATGGCACTGCAGCTGAGGT
TCTTGAATATTTTTTGGCTTTAGAATCTGATGGTGAGAGGATGATTGGAT
GACCGACCCTTTCATAATGAAGCTTCAATACCGTGTTCCACGTTTGTTTC
TCTTTCACGTTCTGTGTTCTGTTTTGAGCATGGCCGAAGACGCAGTGTAA
AACGCACCGATTGCATTTCTTTCTGCACCGCTGTCGTTGGCATGCATAAC
GAACACCCACCGTGGCATGCCATCAAGTGTGACCTGCTTCGCAACTTCCT
GTGGACTGACGACATCTTCCTTTAGACGGCACCCGGTATCCCTGCCTTCC
TTTGCCCTCTCTCCCCGTCCCCGTTGGACTCGCTTATGTCTTTTCCCCGG
CACGACTCGTGACCAACTGTGCCGGCCCAACAACTAAACCCTTATCGCCG
CGAAACGCAAGACGGTCGCGGGAGTGGTGCCCCCCAAAGCCCAAGATATC
ACTGGCGACTCCGTGGGCCAAGACGTGTCCGGCACGACGCTCTCCTTCAC
CCGGCCCCTGGCCCCCGCGAACAAGCAGGCCATCTCGGGAACTCCCGGGG
ACGAGACCATATTCATCTACGCCTTCGGCGAGGACAACGAGCTCGCGTTC
CACGGACTGGCCCCCAACCGGGGGTCCTTGGTCTTGGATCTCTTCTGCGG
GGACGGCGACGGTGCGACGGTCGCTGGAACGCCTGCCCCGACCGTCGGCG
GAACTCCCGCCGCTTCGGAGGCCTCCTCTGCGGCACCAATCGACACCGAC
ACGCCGACGGCGGCGCCCACGATGGCGGTGTCACGAACGCCTCCGTCTTC
GACCCTCTCCATGGCGCCGACGACTTTGGAGTCAGAAACGGGCTCCTCTT
CGGCACCCACGATTGCACCCACCATGGTGGAGTTGGAAACGGGCTCCTCC
TCCGCTCCTTCTGCGGCACCCACCGGCGTTGAGGCGTCCACGTCCTCGCC
CACGGGGACTGCAGGGATGACGGGCTCGGAAACCATGGCGCCGAGCGCCG
CCGATGGTGACAGGGGCGTCGATGTTCCCGGAGACACTGGCGCTCCTACC
GATGCCTCCGATTCGCTGCTGATGACCGAAAGCCCGTCGTCGGCGGGGGA
AGGCCTGGTGGAGGAGGAGACGGACGGCGCTCTCCGCGTGGGAGGCGGGG
GCAGGTGGGCCGCGGCGGCGGCGACTGGGTTCGTGACGGTGCTTGCCGTC
CTGTCGTCGCTCTAG

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10151:476..1940-

>mRNA_E-siliculosus-1a_F_contig10151.160.1 ID=mRNA_E-siliculosus-1a_F_contig10151.160.1|Name=mRNA_E-siliculosus-1a_F_contig10151.160.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1818bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10151:476..1940- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACGAGTCAGAGCGTATCTTCTGACTTCTTCTTGATGGTCGGATCGGACGC
CGCCGTCGGCCTGCCTGACGAGTCTGCTGTCGTGGAGTACGACTTGATAG
TCAGGACGAGTCAGAGCGTATCTTCTGACTTCTTCTTGATGGTCGGATCG
GACGCCGCCGTCGGCCTGCCTGACGAGTCTGCTGTCGTGGAGTACGACTT
GATAGTCAGGACGGTCGCGGGAGTGGTGCCCCCCAAAGCCCAAGATATCA
CTGGCGACTCCGTGGGCCAAGACGTGTCCGGCACGACGCTCTCCTTCACC
CGGCCCCTGGCCCCCGCGAACAAGCAGGCCATCTCGGGAACTCCCGGGGA
CGAGACCATATTCATCTACGCCTTCGGCGAGGACAACGAGCTCGCGTTCC
ACGGACTGGCCCCCAACCGGGGGTCCTTGGTCTTGGATCTCTTCTGCGGG
GACGGCGACGGTGCGACGGTCGCTGGAACGCCTGCCCCGACCGTCGGCGG
AACTCCCGCCGCTTCGGAGGCCTCCTCTGCGGCACCAATCGACACCGACA
CGCCGACGGCGGCGCCCACGATGGCGGTGTCACGAACGCCTCCGTCTTCG
ACCCTCTCCATGGCGCCGACGACTTTGGAGTCAGAAACGGGCTCCTCTTC
GGCACCCACGATTGCACCCACCATGGTGGAGTTGGAAACGGGCTCCTCCT
CCGCTCCTTCTGCGGCACCCACCGGCGTTGAGGCGTCCACGTCCTCGCCC
ACGGGGACTGCAGGGATGACGGGCTCGGAAACCATGGCGCCGAGCGCCGC
CGATGGTGACAGGGGCGTCGATGTTCCCGGAGACACTGGCGCTCCTACCG
ATGCCTCCGATTCGCTGCTGATGACCGAAAGCCCGTCGTCGGCGGGGGAA
GGCCTGGTGGAGGAGGAGACGGACGGCGCTCTCCGCGTGGGAGGCGGGGG
CAGGTGGGCCGCGGCGGCGGCGACTGGGTTCGTGACGGTGCTTGCCGTCC
TGTCGTCGCTCTAGACGGTCGCGGGAGTGGTGCCCCCCAAAGCCCAAGAT
ATCACTGGCGACTCCGTGGGCCAAGACGTGTCCGGCACGACGCTCTCCTT
CACCCGGCCCCTGGCCCCCGCGAACAAGCAGGCCATCTCGGGAACTCCCG
GGGACGAGACCATATTCATCTACGCCTTCGGCGAGGACAACGAGCTCGCG
TTCCACGGACTGGCCCCCAACCGGGGGTCCTTGGTCTTGGATCTCTTCTG
CGGGGACGGCGACGGTGCGACGGTCGCTGGAACGCCTGCCCCGACCGTCG
GCGGAACTCCCGCCGCTTCGGAGGCCTCCTCTGCGGCACCAATCGACACC
GACACGCCGACGGCGGCGCCCACGATGGCGGTGTCACGAACGCCTCCGTC
TTCGACCCTCTCCATGGCGCCGACGACTTTGGAGTCAGAAACGGGCTCCT
CTTCGGCACCCACGATTGCACCCACCATGGTGGAGTTGGAAACGGGCTCC
TCCTCCGCTCCTTCTGCGGCACCCACCGGCGTTGAGGCGTCCACGTCCTC
GCCCACGGGGACTGCAGGGATGACGGGCTCGGAAACCATGGCGCCGAGCG
CCGCCGATGGTGACAGGGGCGTCGATGTTCCCGGAGACACTGGCGCTCCT
ACCGATGCCTCCGATTCGCTGCTGATGACCGAAAGCCCGTCGTCGGCGGG
GGAAGGCCTGGTGGAGGAGGAGACGGACGGCGCTCTCCGCGTGGGAGGCG
GGGGCAGGTGGGCCGCGGCGGCGGCGACTGGGTTCGTGACGGTGCTTGCC
GTCCTGTCGTCGCTCTAG