Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1015.156.1 vs. uniprot
Match: A0A6H5KY01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY01_9PHAE) HSP 1 Score: 56.6 bits (135), Expect = 3.690e-8 Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = 3 Query: 63 DIGAVSLYAGFLDITDEAWTTANLSDD 143
D GAVSLYAGFLDITDEAWTTA+LSDD
Sbjct: 5 DFGAVSLYAGFLDITDEAWTTADLSDD 31
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 0 |
| Stop | 1 |
| Cds size | 192 |
| Model size | 376 |
| Exons | 2 |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927516.998917-CDS-E-siliculosus-1a_F_contig1015:16396..16457 | 1622927516.998917-CDS-E-siliculosus-1a_F_contig1015:16396..16457 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1015 16397..16457 + |
| 1696318563.8506842-CDS-E-siliculosus-1a_F_contig1015:16396..16457 | 1696318563.8506842-CDS-E-siliculosus-1a_F_contig1015:16396..16457 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1015 16397..16457 + |
| 1622927517.0138772-CDS-E-siliculosus-1a_F_contig1015:16680..16811 | 1622927517.0138772-CDS-E-siliculosus-1a_F_contig1015:16680..16811 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1015 16681..16811 + |
| 1696318563.8582752-CDS-E-siliculosus-1a_F_contig1015:16680..16811 | 1696318563.8582752-CDS-E-siliculosus-1a_F_contig1015:16680..16811 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1015 16681..16811 + |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927517.0300848-UTR-E-siliculosus-1a_F_contig1015:16811..16994 | 1622927517.0300848-UTR-E-siliculosus-1a_F_contig1015:16811..16994 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1015 16812..16994 + |
| 1696318563.8680804-UTR-E-siliculosus-1a_F_contig1015:16811..16994 | 1696318563.8680804-UTR-E-siliculosus-1a_F_contig1015:16811..16994 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1015 16812..16994 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1015.156.1 >prot_E-siliculosus-1a_F_contig1015.156.1 ID=prot_E-siliculosus-1a_F_contig1015.156.1|Name=mRNA_E-siliculosus-1a_F_contig1015.156.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=64bp
FTAPCSCRRFGRQREGQQHVAISARCLCTRVSWILPTRHGQQQISRMMVR
TAAVGDQLGCILR* back to topmRNA from alignment at E-siliculosus-1a_F_contig1015:16397..16994+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1015.156.1 ID=mRNA_E-siliculosus-1a_F_contig1015.156.1|Name=mRNA_E-siliculosus-1a_F_contig1015.156.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=598bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1015:16397..16994+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTTACTGCACCGTGCTCTTGTAGGCGTTTTGGCAGACAGAGAGAGGGGCA
ACAACATGTCGGTAAGCCTAGAGAACGCGTCGAAATCAGCAAAGCGGTAT
TGAGTATTGAGCATCAACCCCCAGTCCTCTCTTGGTTGTCTTTTCTGCCT
CCGTCTTCTGCCTCCGTCTCCCCCCCCCACGCTGCACTCCAACCAATTGA
CGACAACTGCTGCTGCGCACGTTACCTCTTCTCCTATTGCTGGTGTGTCT
CGTCTTCCAATATTGCTACCCGCATGCAGGACAGCGATATCGGCGCGGTG
TCTTTGTACGCGGGTTTCTTGGATATTACCGACGAGGCATGGACAACAGC
AAATCTCTCGGATGATGGTGAGAACTGCTGCTGTCGGAGATCAGTTAGGC
TGTATTCTACGTTAGTGCCCCCCCCGGTTCAGCGACCCCCCTGCCTACGT
AGCAACATCAAGCCCCGCGTAGCGACCACAGGATATCGTCACATCGCTGC
AATCAACATTCTCTGATTGAACTGCTACCAGGACGACCGCATGTGACACA
AGATACCACACCCCCTGGACTGATTTTCAAAGTCCCACTAAATACTGG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1015:16397..16994+ >mRNA_E-siliculosus-1a_F_contig1015.156.1 ID=mRNA_E-siliculosus-1a_F_contig1015.156.1|Name=mRNA_E-siliculosus-1a_F_contig1015.156.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=384bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1015:16397..16994+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTTACTGCACCGTGCTCTTGTAGGCGTTTTGGCAGACAGAGAGAGGGGCA
ACAACATGTCGTTTACTGCACCGTGCTCTTGTAGGCGTTTTGGCAGACAG
AGAGAGGGGCAACAACATGTCGCGATATCGGCGCGGTGTCTTTGTACGCG
GGTTTCTTGGATATTACCGACGAGGCATGGACAACAGCAAATCTCTCGGA
TGATGGTGAGAACTGCTGCTGTCGGAGATCAGTTAGGCTGTATTCTACGT
TAGCGATATCGGCGCGGTGTCTTTGTACGCGGGTTTCTTGGATATTACCG
ACGAGGCATGGACAACAGCAAATCTCTCGGATGATGGTGAGAACTGCTGC
TGTCGGAGATCAGTTAGGCTGTATTCTACGTTAG back to top
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