mRNA_E-siliculosus-1a_F_contig1015.156.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1015.156.1
Unique NamemRNA_E-siliculosus-1a_F_contig1015.156.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1015.156.1 vs. uniprot
Match: A0A6H5KY01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY01_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 3.690e-8
Identity = 25/27 (92.59%), Postives = 26/27 (96.30%), Query Frame = 3 
Query:   63 DIGAVSLYAGFLDITDEAWTTANLSDD 143
            D GAVSLYAGFLDITDEAWTTA+LSDD
Sbjct:    5 DFGAVSLYAGFLDITDEAWTTADLSDD 31
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1015.156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KY01_9PHAE3.690e-892.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1015contigE-siliculosus-1a_F_contig1015:16397..16994 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size192
Model size376
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1015.156.1prot_E-siliculosus-1a_F_contig1015.156.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1015 16397..16811 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927516.998917-CDS-E-siliculosus-1a_F_contig1015:16396..164571622927516.998917-CDS-E-siliculosus-1a_F_contig1015:16396..16457Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1015 16397..16457 +
1696318563.8506842-CDS-E-siliculosus-1a_F_contig1015:16396..164571696318563.8506842-CDS-E-siliculosus-1a_F_contig1015:16396..16457Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1015 16397..16457 +
1622927517.0138772-CDS-E-siliculosus-1a_F_contig1015:16680..168111622927517.0138772-CDS-E-siliculosus-1a_F_contig1015:16680..16811Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1015 16681..16811 +
1696318563.8582752-CDS-E-siliculosus-1a_F_contig1015:16680..168111696318563.8582752-CDS-E-siliculosus-1a_F_contig1015:16680..16811Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1015 16681..16811 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927517.0300848-UTR-E-siliculosus-1a_F_contig1015:16811..169941622927517.0300848-UTR-E-siliculosus-1a_F_contig1015:16811..16994Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1015 16812..16994 +
1696318563.8680804-UTR-E-siliculosus-1a_F_contig1015:16811..169941696318563.8680804-UTR-E-siliculosus-1a_F_contig1015:16811..16994Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1015 16812..16994 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1015.156.1

>prot_E-siliculosus-1a_F_contig1015.156.1 ID=prot_E-siliculosus-1a_F_contig1015.156.1|Name=mRNA_E-siliculosus-1a_F_contig1015.156.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=64bp
FTAPCSCRRFGRQREGQQHVAISARCLCTRVSWILPTRHGQQQISRMMVR
TAAVGDQLGCILR*
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mRNA from alignment at E-siliculosus-1a_F_contig1015:16397..16994+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1015.156.1 ID=mRNA_E-siliculosus-1a_F_contig1015.156.1|Name=mRNA_E-siliculosus-1a_F_contig1015.156.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=598bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1015:16397..16994+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTTACTGCACCGTGCTCTTGTAGGCGTTTTGGCAGACAGAGAGAGGGGCA
ACAACATGTCGGTAAGCCTAGAGAACGCGTCGAAATCAGCAAAGCGGTAT
TGAGTATTGAGCATCAACCCCCAGTCCTCTCTTGGTTGTCTTTTCTGCCT
CCGTCTTCTGCCTCCGTCTCCCCCCCCCACGCTGCACTCCAACCAATTGA
CGACAACTGCTGCTGCGCACGTTACCTCTTCTCCTATTGCTGGTGTGTCT
CGTCTTCCAATATTGCTACCCGCATGCAGGACAGCGATATCGGCGCGGTG
TCTTTGTACGCGGGTTTCTTGGATATTACCGACGAGGCATGGACAACAGC
AAATCTCTCGGATGATGGTGAGAACTGCTGCTGTCGGAGATCAGTTAGGC
TGTATTCTACGTTAGTGCCCCCCCCGGTTCAGCGACCCCCCTGCCTACGT
AGCAACATCAAGCCCCGCGTAGCGACCACAGGATATCGTCACATCGCTGC
AATCAACATTCTCTGATTGAACTGCTACCAGGACGACCGCATGTGACACA
AGATACCACACCCCCTGGACTGATTTTCAAAGTCCCACTAAATACTGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1015:16397..16994+

>mRNA_E-siliculosus-1a_F_contig1015.156.1 ID=mRNA_E-siliculosus-1a_F_contig1015.156.1|Name=mRNA_E-siliculosus-1a_F_contig1015.156.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=384bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1015:16397..16994+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTTACTGCACCGTGCTCTTGTAGGCGTTTTGGCAGACAGAGAGAGGGGCA
ACAACATGTCGTTTACTGCACCGTGCTCTTGTAGGCGTTTTGGCAGACAG
AGAGAGGGGCAACAACATGTCGCGATATCGGCGCGGTGTCTTTGTACGCG
GGTTTCTTGGATATTACCGACGAGGCATGGACAACAGCAAATCTCTCGGA
TGATGGTGAGAACTGCTGCTGTCGGAGATCAGTTAGGCTGTATTCTACGT
TAGCGATATCGGCGCGGTGTCTTTGTACGCGGGTTTCTTGGATATTACCG
ACGAGGCATGGACAACAGCAAATCTCTCGGATGATGGTGAGAACTGCTGC
TGTCGGAGATCAGTTAGGCTGTATTCTACGTTAG
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