mRNA_E-siliculosus-1a_F_contig10142.152.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10142.152.1 vs. uniprot
Match: A0A6H5JQD2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQD2_9PHAE) HSP 1 Score: 197 bits (501), Expect = 1.870e-56 Identity = 108/239 (45.19%), Postives = 136/239 (56.90%), Query Frame = 3
Query: 9 REWVKKTVQASPACRELLWTISEREVGTRRHGTGRPRGIVEWNVRLGQQ-----AAAPRAQGWQETIGALLRRTGPGGLDLLDLYKAWFSCGRETSNPNMCGNGRCPRCWCNRHLHLVNMEVECSNTWIGAPERVSGGTGTIRGAPMEDAHDKPKFRWILAPPPCGTDVEIYSNRAALDAKKPGPAGTCTLGKVAFFSQHRGNSLQ-DGGEGLLTRWAAVAEYVTAGVGSSEKSDAVTG 707
R W+ + ++ASPACR+L+ T+ + +R+HG R R VEW + + + AA W E I + G D LY+ W+SCGR C RC RCW R + E C N W GAP R SGGTGT+RG P+E A + RW+ AP PCGTDVEI+ AL A++PGPAGTCTLGKVA+F +H GN Q + G T W AVAEYV+A VG S DA TG
Sbjct: 124 RTWLTERIKASPACRKLMRTLLDSSKVSRKHGVSRVRRTVEWKMDITNKGKSITAAPDNDIRWIEAIAKASK-----GFDPDALYRRWYSCGRPHGEEARCSGLRCIRCWKFRVNGFRHTEARCFNNWTGAPARASGGTGTVRGCPVEMAEPNNR-RWMFAPYPCGTDVEIFFTPDALAAQRPGPAGTCTLGKVAYFIEHVGNPPQGEDTRGEPTVWVAVAEYVSAAVGQSTMRDAATG 356
BLAST of mRNA_E-siliculosus-1a_F_contig10142.152.1 vs. uniprot
Match: A0A6H5K7J0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7J0_9PHAE) HSP 1 Score: 189 bits (479), Expect = 1.710e-54 Identity = 100/140 (71.43%), Postives = 104/140 (74.29%), Query Frame = 3
Query: 3 TKREWVKKTVQASPACRELLWTISEREVGTRR----HGTGRPRGIVEWN-VRLGQQAAAPRAQGWQETIGALLRRTGPGGLDLLDLYKAWFSCGRETSNPNMCGNGRCPRCWCNRHLHLVNMEVECSNTWIGAPERVSGG 407
T REWVKKTVQASP+CRELL ISE E+GTR HG V N +RL RAQ WQE IGALLRRTG GGL+LLDLYKAWFSCGRE SNPNM NGRCPRCW NRH H VNME ECSNTWIGAPERVSGG
Sbjct: 145 TMREWVKKTVQASPSCRELLRAISEWEIGTRTAPGDHGESLSGTPVSGNRLRL-------RAQRWQEKIGALLRRTGQGGLNLLDLYKAWFSCGREKSNPNMSENGRCPRCWRNRHPHTVNMEGECSNTWIGAPERVSGG 277
BLAST of mRNA_E-siliculosus-1a_F_contig10142.152.1 vs. uniprot
Match: A0A6H5KYQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYQ6_9PHAE) HSP 1 Score: 197 bits (501), Expect = 3.310e-53 Identity = 108/239 (45.19%), Postives = 136/239 (56.90%), Query Frame = 3
Query: 9 REWVKKTVQASPACRELLWTISEREVGTRRHGTGRPRGIVEWNVRLGQQ-----AAAPRAQGWQETIGALLRRTGPGGLDLLDLYKAWFSCGRETSNPNMCGNGRCPRCWCNRHLHLVNMEVECSNTWIGAPERVSGGTGTIRGAPMEDAHDKPKFRWILAPPPCGTDVEIYSNRAALDAKKPGPAGTCTLGKVAFFSQHRGNSLQ-DGGEGLLTRWAAVAEYVTAGVGSSEKSDAVTG 707
R W+ + ++ASPACR+L+ T+ + +R+HG R R VEW + + + AA W E I + G D LY+ W+SCGR C RC RCW R + E C N W GAP R SGGTGT+RG P+E A + RW+ AP PCGTDVEI+ AL A++PGPAGTCTLGKVA+F +H GN Q + G T W AVAEYV+A VG S DA TG
Sbjct: 745 RTWLTERIKASPACRKLMRTLLDSSKVSRKHGVSRVRRTVEWKMDITNKGKSITAAPDNDIRWIEAIAKASK-----GFDPDALYRRWYSCGRPHGEEARCSGLRCIRCWKFRVNGFRHTEARCFNNWTGAPARASGGTGTVRGCPVEMAEPNNR-RWMFAPYPCGTDVEIFFTPDALAAQRPGPAGTCTLGKVAYFIEHVGNPPQGEDTRGEPTVWVAVAEYVSAAVGQSTMRDAATG 977
BLAST of mRNA_E-siliculosus-1a_F_contig10142.152.1 vs. uniprot
Match: A0A6H5JF97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF97_9PHAE) HSP 1 Score: 195 bits (496), Expect = 1.140e-52 Identity = 105/237 (44.30%), Postives = 138/237 (58.23%), Query Frame = 3
Query: 15 WVKKTVQASPACRELLWTISEREVGTRRHGTGRPRGIVEWNVRLGQ-----QAAAPRAQGWQETIGALLRRTGPGGLDLLDLYKAWFSCGRETSNPNMCGNGRCPRCWCNRHLHLVNMEVECSNTWIGAPERVSGGTGTIRGAPMEDAHDKPKFRWILAPPPCGTDVEIYSNRAALDAKKPGPAGTCTLGKVAFFSQHRGNS-LQDGGEGLLTRWAAVAEYVTAGVGSSEKSDAVTG 707
WV TVQAS CR+LL T+S+ +R+HG GR RG V W + + Q +A + + W + +++T L DLY W+SCGR CG +CPRCW R++ V SN W GAP VSGG+GT+RG ++ A + +W+ GTDVEIYSNR A+ + KPGPAGTC+L +VAFF++H GN L G T W AVAEYVTAG+G + DA TG
Sbjct: 564 WVVSTVQASSPCRKLLKTLSDTLSHSRKHGVGRARGTVNWEMSIAQHGGELEATSGSERSWMRALAMAMQQT----FRLEDLYHTWYSCGRLHGVQAFCGKPQCPRCWKYRNVGFREQRVRFSNNWTGAPSEVSGGSGTLRGGNVQIAKTNDR-QWMAE---SGTDVEIYSNRDAMISNKPGPAGTCSLARVAFFAEHVGNPPLGVDTTGEKTLWVAVAEYVTAGIGQDKFVDAATG 792
BLAST of mRNA_E-siliculosus-1a_F_contig10142.152.1 vs. uniprot
Match: D7FWW6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW6_ECTSI) HSP 1 Score: 187 bits (476), Expect = 5.890e-50 Identity = 90/97 (92.78%), Postives = 92/97 (94.85%), Query Frame = 3
Query: 3 TKREWVKKTVQASPACRELLWTISEREVGTRRHGTGRPRGIVEWNVRLGQQAAAPRAQGWQETIGALLRRTGPGGLDLLDLYKAWFSCGRETSNPNM 293
TKR WVKKTVQASPACRELL TISE E+G RRHGTGRPRGIVEWNVRLG+QAAAP AQGWQETIGALLRRTGPGGLDLLDLYKAWFSCGRETSNPNM
Sbjct: 823 TKRGWVKKTVQASPACRELLRTISEWEIGARRHGTGRPRGIVEWNVRLGRQAAAPSAQGWQETIGALLRRTGPGGLDLLDLYKAWFSCGRETSNPNM 919 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10142.152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10142.152.1 >prot_E-siliculosus-1a_F_contig10142.152.1 ID=prot_E-siliculosus-1a_F_contig10142.152.1|Name=mRNA_E-siliculosus-1a_F_contig10142.152.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=142bp MCGNGRCPRCWCNRHLHLVNMEVECSNTWIGAPERVSGGTGTIRGAPMEDback to top mRNA from alignment at E-siliculosus-1a_F_contig10142:590..1538+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10142.152.1 ID=mRNA_E-siliculosus-1a_F_contig10142.152.1|Name=mRNA_E-siliculosus-1a_F_contig10142.152.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=949bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10142:590..1538+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10142:590..1538+ >mRNA_E-siliculosus-1a_F_contig10142.152.1 ID=mRNA_E-siliculosus-1a_F_contig10142.152.1|Name=mRNA_E-siliculosus-1a_F_contig10142.152.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=852bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10142:590..1538+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |