mRNA_E-siliculosus-1a_F_contig10142.152.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10142.152.1
Unique NamemRNA_E-siliculosus-1a_F_contig10142.152.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10142.152.1 vs. uniprot
Match: A0A6H5JQD2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQD2_9PHAE)

HSP 1 Score: 197 bits (501), Expect = 1.870e-56
Identity = 108/239 (45.19%), Postives = 136/239 (56.90%), Query Frame = 3
Query:    9 REWVKKTVQASPACRELLWTISEREVGTRRHGTGRPRGIVEWNVRLGQQ-----AAAPRAQGWQETIGALLRRTGPGGLDLLDLYKAWFSCGRETSNPNMCGNGRCPRCWCNRHLHLVNMEVECSNTWIGAPERVSGGTGTIRGAPMEDAHDKPKFRWILAPPPCGTDVEIYSNRAALDAKKPGPAGTCTLGKVAFFSQHRGNSLQ-DGGEGLLTRWAAVAEYVTAGVGSSEKSDAVTG 707
            R W+ + ++ASPACR+L+ T+ +    +R+HG  R R  VEW + +  +     AA      W E I    +     G D   LY+ W+SCGR       C   RC RCW  R     + E  C N W GAP R SGGTGT+RG P+E A    + RW+ AP PCGTDVEI+    AL A++PGPAGTCTLGKVA+F +H GN  Q +   G  T W AVAEYV+A VG S   DA TG
Sbjct:  124 RTWLTERIKASPACRKLMRTLLDSSKVSRKHGVSRVRRTVEWKMDITNKGKSITAAPDNDIRWIEAIAKASK-----GFDPDALYRRWYSCGRPHGEEARCSGLRCIRCWKFRVNGFRHTEARCFNNWTGAPARASGGTGTVRGCPVEMAEPNNR-RWMFAPYPCGTDVEIFFTPDALAAQRPGPAGTCTLGKVAYFIEHVGNPPQGEDTRGEPTVWVAVAEYVSAAVGQSTMRDAATG 356          
BLAST of mRNA_E-siliculosus-1a_F_contig10142.152.1 vs. uniprot
Match: A0A6H5K7J0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7J0_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 1.710e-54
Identity = 100/140 (71.43%), Postives = 104/140 (74.29%), Query Frame = 3
Query:    3 TKREWVKKTVQASPACRELLWTISEREVGTRR----HGTGRPRGIVEWN-VRLGQQAAAPRAQGWQETIGALLRRTGPGGLDLLDLYKAWFSCGRETSNPNMCGNGRCPRCWCNRHLHLVNMEVECSNTWIGAPERVSGG 407
            T REWVKKTVQASP+CRELL  ISE E+GTR     HG       V  N +RL       RAQ WQE IGALLRRTG GGL+LLDLYKAWFSCGRE SNPNM  NGRCPRCW NRH H VNME ECSNTWIGAPERVSGG
Sbjct:  145 TMREWVKKTVQASPSCRELLRAISEWEIGTRTAPGDHGESLSGTPVSGNRLRL-------RAQRWQEKIGALLRRTGQGGLNLLDLYKAWFSCGREKSNPNMSENGRCPRCWRNRHPHTVNMEGECSNTWIGAPERVSGG 277          
BLAST of mRNA_E-siliculosus-1a_F_contig10142.152.1 vs. uniprot
Match: A0A6H5KYQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYQ6_9PHAE)

HSP 1 Score: 197 bits (501), Expect = 3.310e-53
Identity = 108/239 (45.19%), Postives = 136/239 (56.90%), Query Frame = 3
Query:    9 REWVKKTVQASPACRELLWTISEREVGTRRHGTGRPRGIVEWNVRLGQQ-----AAAPRAQGWQETIGALLRRTGPGGLDLLDLYKAWFSCGRETSNPNMCGNGRCPRCWCNRHLHLVNMEVECSNTWIGAPERVSGGTGTIRGAPMEDAHDKPKFRWILAPPPCGTDVEIYSNRAALDAKKPGPAGTCTLGKVAFFSQHRGNSLQ-DGGEGLLTRWAAVAEYVTAGVGSSEKSDAVTG 707
            R W+ + ++ASPACR+L+ T+ +    +R+HG  R R  VEW + +  +     AA      W E I    +     G D   LY+ W+SCGR       C   RC RCW  R     + E  C N W GAP R SGGTGT+RG P+E A    + RW+ AP PCGTDVEI+    AL A++PGPAGTCTLGKVA+F +H GN  Q +   G  T W AVAEYV+A VG S   DA TG
Sbjct:  745 RTWLTERIKASPACRKLMRTLLDSSKVSRKHGVSRVRRTVEWKMDITNKGKSITAAPDNDIRWIEAIAKASK-----GFDPDALYRRWYSCGRPHGEEARCSGLRCIRCWKFRVNGFRHTEARCFNNWTGAPARASGGTGTVRGCPVEMAEPNNR-RWMFAPYPCGTDVEIFFTPDALAAQRPGPAGTCTLGKVAYFIEHVGNPPQGEDTRGEPTVWVAVAEYVSAAVGQSTMRDAATG 977          
BLAST of mRNA_E-siliculosus-1a_F_contig10142.152.1 vs. uniprot
Match: A0A6H5JF97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF97_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 1.140e-52
Identity = 105/237 (44.30%), Postives = 138/237 (58.23%), Query Frame = 3
Query:   15 WVKKTVQASPACRELLWTISEREVGTRRHGTGRPRGIVEWNVRLGQ-----QAAAPRAQGWQETIGALLRRTGPGGLDLLDLYKAWFSCGRETSNPNMCGNGRCPRCWCNRHLHLVNMEVECSNTWIGAPERVSGGTGTIRGAPMEDAHDKPKFRWILAPPPCGTDVEIYSNRAALDAKKPGPAGTCTLGKVAFFSQHRGNS-LQDGGEGLLTRWAAVAEYVTAGVGSSEKSDAVTG 707
            WV  TVQAS  CR+LL T+S+    +R+HG GR RG V W + + Q     +A +   + W   +   +++T      L DLY  W+SCGR       CG  +CPRCW  R++      V  SN W GAP  VSGG+GT+RG  ++ A    + +W+      GTDVEIYSNR A+ + KPGPAGTC+L +VAFF++H GN  L     G  T W AVAEYVTAG+G  +  DA TG
Sbjct:  564 WVVSTVQASSPCRKLLKTLSDTLSHSRKHGVGRARGTVNWEMSIAQHGGELEATSGSERSWMRALAMAMQQT----FRLEDLYHTWYSCGRLHGVQAFCGKPQCPRCWKYRNVGFREQRVRFSNNWTGAPSEVSGGSGTLRGGNVQIAKTNDR-QWMAE---SGTDVEIYSNRDAMISNKPGPAGTCSLARVAFFAEHVGNPPLGVDTTGEKTLWVAVAEYVTAGIGQDKFVDAATG 792          
BLAST of mRNA_E-siliculosus-1a_F_contig10142.152.1 vs. uniprot
Match: D7FWW6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW6_ECTSI)

HSP 1 Score: 187 bits (476), Expect = 5.890e-50
Identity = 90/97 (92.78%), Postives = 92/97 (94.85%), Query Frame = 3
Query:    3 TKREWVKKTVQASPACRELLWTISEREVGTRRHGTGRPRGIVEWNVRLGQQAAAPRAQGWQETIGALLRRTGPGGLDLLDLYKAWFSCGRETSNPNM 293
            TKR WVKKTVQASPACRELL TISE E+G RRHGTGRPRGIVEWNVRLG+QAAAP AQGWQETIGALLRRTGPGGLDLLDLYKAWFSCGRETSNPNM
Sbjct:  823 TKRGWVKKTVQASPACRELLRTISEWEIGARRHGTGRPRGIVEWNVRLGRQAAAPSAQGWQETIGALLRRTGPGGLDLLDLYKAWFSCGRETSNPNM 919          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10142.152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JQD2_9PHAE1.870e-5645.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7J0_9PHAE1.710e-5471.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KYQ6_9PHAE3.310e-5345.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JF97_9PHAE1.140e-5244.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWW6_ECTSI5.890e-5092.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10142contigE-siliculosus-1a_F_contig10142:590..1538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size426
Model size949
Exons1
Ec32 orthologEc-04_002132.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10142.152.1prot_E-siliculosus-1a_F_contig10142.152.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10142 880..1305 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927516.8331738-UTR-E-siliculosus-1a_F_contig10142:589..8791622927516.8331738-UTR-E-siliculosus-1a_F_contig10142:589..879Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10142 590..879 +
1696318563.7849703-UTR-E-siliculosus-1a_F_contig10142:589..8791696318563.7849703-UTR-E-siliculosus-1a_F_contig10142:589..879Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10142 590..879 +
1622927516.8587868-UTR-E-siliculosus-1a_F_contig10142:1305..15381622927516.8587868-UTR-E-siliculosus-1a_F_contig10142:1305..1538Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10142 1306..1538 +
1696318563.8032973-UTR-E-siliculosus-1a_F_contig10142:1305..15381696318563.8032973-UTR-E-siliculosus-1a_F_contig10142:1305..1538Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10142 1306..1538 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927516.8442261-CDS-E-siliculosus-1a_F_contig10142:879..13051622927516.8442261-CDS-E-siliculosus-1a_F_contig10142:879..1305Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10142 880..1305 +
1696318563.795641-CDS-E-siliculosus-1a_F_contig10142:879..13051696318563.795641-CDS-E-siliculosus-1a_F_contig10142:879..1305Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10142 880..1305 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10142.152.1

>prot_E-siliculosus-1a_F_contig10142.152.1 ID=prot_E-siliculosus-1a_F_contig10142.152.1|Name=mRNA_E-siliculosus-1a_F_contig10142.152.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=142bp
MCGNGRCPRCWCNRHLHLVNMEVECSNTWIGAPERVSGGTGTIRGAPMED
AHDKPKFRWILAPPPCGTDVEIYSNRAALDAKKPGPAGTCTLGKVAFFSQ
HRGNSLQDGGEGLLTRWAAVAEYVTAGVGSSEKSDAVTGML*
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mRNA from alignment at E-siliculosus-1a_F_contig10142:590..1538+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10142.152.1 ID=mRNA_E-siliculosus-1a_F_contig10142.152.1|Name=mRNA_E-siliculosus-1a_F_contig10142.152.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=949bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10142:590..1538+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGACCAAGCGGGAGTGGGTGAAGAAGACCGTGCAGGCTAGTCCGGCCTGT CGTGAGCTTCTCTGGACCATCTCCGAGCGGGAGGTCGGGACCCGCCGGCA CGGCACCGGGAGACCCCGGGGGATCGTTGAGTGGAACGTCCGTCTCGGGC AACAGGCTGCGGCTCCGAGAGCACAGGGTTGGCAGGAGACAATCGGAGCC CTCCTCCGGCGAACGGGACCGGGCGGGCTGGATCTCCTCGACCTCTACAA AGCATGGTTCTCGTGCGGCAGGGAGACGAGCAACCCCAACATGTGCGGCA ACGGCCGCTGTCCTCGTTGTTGGTGCAATCGACACCTGCACCTCGTCAAC ATGGAGGTTGAGTGCAGCAACACGTGGATCGGCGCCCCTGAGAGGGTTTC TGGTGGCACGGGCACCATCAGAGGGGCGCCGATGGAAGACGCGCACGACA AACCCAAATTCCGGTGGATTTTGGCCCCCCCGCCGTGTGGAACGGATGTC GAGATTTACTCCAATCGGGCGGCCCTGGACGCCAAGAAGCCTGGCCCTGC TGGGACATGCACGCTGGGCAAGGTTGCATTCTTCTCCCAGCACAGGGGAA ACTCTCTCCAAGATGGCGGGGAAGGATTGCTGACCAGATGGGCGGCGGTC GCCGAGTACGTCACCGCTGGTGTCGGAAGCAGCGAGAAGTCGGACGCCGT GACTGGGATGCTGTGATGAGACTGCGCAAGAGATTGTCGTTTTTTCCAGC GGACGCCATCCGGCGCGTTGTGCACATGTATCATCAGTGCCCCGAGGGCG GGTGTGGGCCGGTTTCAGAGAGCGGGAAAGGGAACGTGTGTCGCCACGTG TTCGAGCCCGGAGCCGGCAGCGACCGCTTCCTCTTCAACAAATACTTCCA CGGCCCGACCCCTGCCTCTTCACCGTGACTGATCTGATGGGCAACATGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10142:590..1538+

>mRNA_E-siliculosus-1a_F_contig10142.152.1 ID=mRNA_E-siliculosus-1a_F_contig10142.152.1|Name=mRNA_E-siliculosus-1a_F_contig10142.152.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=852bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10142:590..1538+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTGCGGCAACGGCCGCTGTCCTCGTTGTTGGTGCAATCGACACCTGCA
CCTCGTCAACATGGAGGTTGAGTGCAGCAACACGTGGATCGGCGCCCCTG
AGAGGGTTTCTGGTGGCACGGGCACCATCAGAGGGGCGCCGATGGAAGAC
GCGCACGACAAACCCAAATTCCGGTGGATTTTGGCCCCCCCGCCGTGTGG
AACGGATGTCGAGATTTACTCCAATCGGGCGGCCCTGGACGCCAAGAAGC
CTGGCCCTGCTGGGACATGCACGCTGGGCAAGGTTGCATTCTTCTCCCAG
CACAGGGGAAACTCTCTCCAAGATGGCGGGGAAGGATTGCTGACCAGATG
GGCGGCGGTCGCCGAGTACGTCACCGCTGGTGTCGGAAGCAGCGAGAAGT
CGGACGCCGTGACTGGGATGCTGTGAATGTGCGGCAACGGCCGCTGTCCT
CGTTGTTGGTGCAATCGACACCTGCACCTCGTCAACATGGAGGTTGAGTG
CAGCAACACGTGGATCGGCGCCCCTGAGAGGGTTTCTGGTGGCACGGGCA
CCATCAGAGGGGCGCCGATGGAAGACGCGCACGACAAACCCAAATTCCGG
TGGATTTTGGCCCCCCCGCCGTGTGGAACGGATGTCGAGATTTACTCCAA
TCGGGCGGCCCTGGACGCCAAGAAGCCTGGCCCTGCTGGGACATGCACGC
TGGGCAAGGTTGCATTCTTCTCCCAGCACAGGGGAAACTCTCTCCAAGAT
GGCGGGGAAGGATTGCTGACCAGATGGGCGGCGGTCGCCGAGTACGTCAC
CGCTGGTGTCGGAAGCAGCGAGAAGTCGGACGCCGTGACTGGGATGCTGT
GA
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