mRNA_E-siliculosus-1a_F_contig1014.147.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1014.147.1
Unique NamemRNA_E-siliculosus-1a_F_contig1014.147.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1014.147.1 vs. uniprot
Match: D7FLL8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLL8_ECTSI)

HSP 1 Score: 1197 bits (3096), Expect = 0.000e+0
Identity = 643/696 (92.39%), Postives = 650/696 (93.39%), Query Frame = 1
Query:  136 MLRSCNLSPPLPAGYSRGVRKRCAMAAFTTANEITTMGHKKGGVFCLRGGSDAEGDALQVGGEEENVKRETPTATRASAADSEDEAWPGAEEEGAPFGGVALVTERSTATGGSKDRVSYSVLADGTLEVGLAAERKEPRLPTSTAPSKPXXXXXXXPPSRENTAVANAPAGSRRVLQGVRRHAGDLKTGVVEATKEVSRETRAAAAAAGACVARAGVAVRGGLMNTFLPAGYPGSVRPEYVRYRCWDILQDLSSHLRGVLATQAVLEGMGVGRAGSTPLAATLQWMARDGASMIGGLLFTSVASANFGVNIKTWRLFADTSNDIGLALEMLAPLPAFREGGRFLRLICIASVFKAACGVAGGATGAAITEHWAIDNNIADIGAKNGAQHTVASLLGLGLSVWFARAVSVGGSASGSRVWGWYAVLTLVHLLANYAAMRTLALRSLNPTRASLLVTEFLGQALGSTEGRSGTRGSEQDXXXXXXXXXXXXXXXXXGEERKGPALDWMGRIRDQGSPPESVAVLSPFAAARRERILVLPGWFRALKPWGDFLQIHVGVPVRALVGEADDLLWLTSLYHDERSMVGVQVSYKPLGARMETTVNLALREDASPEDRLHAMFQANVIHHLVVRDPDGIPHGEDGVDRTLFLRKVTEEALRVTRKEFPAFRKALVREGWDLSRVTLGGGSWVGRWGSLAKED 2223
            M+ SCN SPPLPAGYSRGVRKRCA+AAFTTANE+TTMGHKKGGVFCLRGGSD EGDAL VGGEEE VKRETPTATRASAADSE EAWPGAEEEG PFGGVALVTERSTATGGSKDR                      +LP STAPS P       PPSRENTAVANA A  RRVLQGVRR AGDLKTG+VEATKEV+RETRAAAAAAGACVARAGVAVRGGLMNTFLPAGYPGSVRPEYVRYRCWDILQDLSSHLRGVLATQAVLEGMGVGRAGSTPLAATLQWMARDGASMIGGLLFTSVASANFGVNIKTWRLFADTSNDIGLALEMLAPLPAFREGGRFLRLICIASVFKAACGVAGGATGAAITEHWAIDNNIADIGAKNGAQHTVASLLGLGLSVWFARAVSVGGSASGSRVWGWYAVLTLVHLLANYAAMRTLALRSLNPTRASLLVTE+LGQALGSTEGRSGTRGSEQ XXXXXXXXXXXXXXXX GEERKGPALDWMGRIRDQGSPPESVAVLSPFAAARRERILVLPGWFRALKPWGDFLQIHVGVPVRALVGEADDLLWLTSLYHDERSMVGVQVSYKPLGARMETTVNLALREDASPEDRLHAMFQANVI HLVVRDPDGIPHGEDGVDRTLFLRKVTEEALRVTRKEFPAFRKALVREGWDLSRVTLGGG WVGRWGSLAKED
Sbjct:    1 MMPSCNFSPPLPAGYSRGVRKRCAIAAFTTANEMTTMGHKKGGVFCLRGGSD-EGDALHVGGEEEKVKRETPTATRASAADSEGEAWPGAEEEGTPFGGVALVTERSTATGGSKDR----------------------QLPASTAPSPPPHLPTIPPPSRENTAVANASAEPRRVLQGVRRCAGDLKTGLVEATKEVARETRAAAAAAGACVARAGVAVRGGLMNTFLPAGYPGSVRPEYVRYRCWDILQDLSSHLRGVLATQAVLEGMGVGRAGSTPLAATLQWMARDGASMIGGLLFTSVASANFGVNIKTWRLFADTSNDIGLALEMLAPLPAFREGGRFLRLICIASVFKAACGVAGGATGAAITEHWAIDNNIADIGAKNGAQHTVASLLGLGLSVWFARAVSVGGSASGSRVWGWYAVLTLVHLLANYAAMRTLALRSLNPTRASLLVTEYLGQALGSTEGRSGTRGSEQXXXXXXXXXXXXXXXXXGGEERKGPALDWMGRIRDQGSPPESVAVLSPFAAARRERILVLPGWFRALKPWGDFLQIHVGVPVRALVGEADDLLWLTSLYHDERSMVGVQVSYKPLGARMETTVNLALREDASPEDRLHAMFQANVIQHLVVRDPDGIPHGEDGVDRTLFLRKVTEEALRVTRKEFPAFRKALVREGWDLSRVTLGGGPWVGRWGSLAKED 673          
BLAST of mRNA_E-siliculosus-1a_F_contig1014.147.1 vs. uniprot
Match: W7U3D2_9STRA (Uncharacterized protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U3D2_9STRA)

HSP 1 Score: 286 bits (733), Expect = 3.740e-84
Identity = 193/488 (39.55%), Postives = 252/488 (51.64%), Query Frame = 1
Query:  802 LMNTFLPAGYPGSVRPEYVRYRCWDILQDLSSHLRGVLATQAVLEGMGVGRAGSTPLAATLQWMARDGASMIGGLLFTSVASANFGVNIKTWRLFADTSNDIGLALEMLAPLPAFREGGRFLRLICIASVFKAACGVAGGATGAAITEHWAIDNNIADIGAKNGAQHTVASLLGLGLSVWFARAVSVGGSASGSRVWGWYAVLTLVHLLANYAAMRTLALRSLNPTRASLLVTEFLGQALGSTEGRSGTRGSEQDXXXXXXXXXXXXXXXXXGEERKGPALDWMGRIRDQGSPPESVAVLSPFAAARRERILVLPGWFRALKPWGDFLQ--------------------IHVGVPVRALVGEADDLLWLTSLYHDERSMVG-VQVSYKPLGARMETT---VNLALREDASPEDRLHAMFQANVIHHLVVRDPDGIPHGEDGVDRTLFLRKVTEEALRVTRKEFPAFRKALVREGWDLSRVTLGGGSWV 2193
            L   FLP G+P SV PEY+RY+ W+++QDLS++LRG+LATQA+LEG+GVGR G+TPLAATLQW+ RDGASM+ GL+FTS  S NFGVN K+WRLFAD   DIG+ L+MLAPL  F +   FL  IC+ASV K+ CG+A GA+   I EH A  NN+A++ AK GAQHT  SL GLG  +WFAR  +     S  RVW  Y +LT++HL ANYAAMR LA  S+N  R ++L+T F                                                           E+ +VLSP   ARRE I+V  G +R  K W    Q                    I +GV V+ L   A+ L  L  L+  E+ M+  V V    L  R  T    + +ALREDA+    L A   A+    L+ R        + G +    +  V     +   + FP   + L R+GW+L RV L    W+
Sbjct:  136 LHTVFLPVGFPSSVAPEYLRYQQWNVVQDLSTYLRGILATQAILEGVGVGREGATPLAATLQWITRDGASMMSGLVFTSFLSTNFGVNAKSWRLFADFMVDIGITLDMLAPL--FPKN--FLLCICLASVCKSLCGIAAGASNGNIVEHMARTNNLAEVLAKGGAQHTAVSLFGLGFGMWFARVAN----QSPRRVWTAYTLLTVIHLTANYAAMRVLAFTSINRRRLNVLLTAFR----------------------------------------------------------ENASVLSPAEVARRETIIVDVGRWRPPKLWTALFQKGKRRATAELAKDAHAPIWNIRLGVRVKDLTRFAEGLTELQRLFSQEQYMLNMVNVFDGELPTRKVTRKIQIAVALREDATNLTLLKACLHAD----LIARRGFEAVKRKKGTENIEIISSVISSTYQELCQCFPNMVQGLRRQGWNLERVLLSPEGWI 553          
BLAST of mRNA_E-siliculosus-1a_F_contig1014.147.1 vs. uniprot
Match: A0A7S0EV14_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0EV14_9CRYP)

HSP 1 Score: 252 bits (644), Expect = 1.770e-72
Identity = 160/397 (40.30%), Postives = 228/397 (57.43%), Query Frame = 1
Query:  811 TFLPAGYPGSVRPEYVRYRCWDILQDLSSHLRGVLATQAVLEGMGVGRAGSTPLAATLQWMARDGASMIGGLLFTSVASANFGVNIKTWRLFADTSNDIGLALEMLAPLPAFREGGRFLRLICIASVFKAACGVAGGATGAAITEHWAIDNNIADIGAKNGAQHTVASLLGLGLSVWFARAVSVGGSASGSRVWGWYAVLTLVHLLANYAAMRTLALRSLNPTRASLLVTEFLGQALGSTEGRSGTRGSEQDXXXXXXXXXXXXXXXXXGEERKGPALDWMGRIRDQGSPPESVAVLSPFAAARRERILVLPGWFRALKPWGDFLQIHVGVPVRALVGEADDLLWLTSLYHDERSMVGVQVSYKPLGARMETTVNLALREDASPEDRLHAMFQANVI 2001
            TFLP+GYP S+  EY +Y+ +++LQDL+S+LRG+L+TQ +LEGMGVG+AG T LAAT+QWMARDG+SM+GGLLFT+ AS++FG++IK WRLFAD  ND+ L L+MLAP  A+ E   FL +IC++SVFKA CGV+ GA  AAI +HWA   NIAD+GAK GAQHT+ S+L L L   FA+A +    +S   +W  + VLT +H+ A Y+ MRTLALR L  ++   ++ + L                                                    D     +  + ++P   A+ +++L LP W  A  P+  F ++  GV +  ++     L  L SL+  E+ MV  Q    P  A+    V + + E+++P D L A   A+VI
Sbjct:   65 TFLPSGYPASLPDEYTKYQAYNLLQDLTSNLRGILSTQKILEGMGVGKAGVTSLAATMQWMARDGSSMLGGLLFTAFASSSFGIHIKRWRLFADLINDVALLLDMLAP--AYPE--LFLPIICLSSVFKAMCGVSAGACNAAIVQHWATRGNIADVGAKTGAQHTIVSVLALPLGFLFAQAAN----SSLQSLWASFVVLTSIHVWACYSMMRTLALRILTRSQLDRILPKLLF---------------------------------------------------DDNEKSKGTSSMTPACLAKTDKLLWLP-W--AEDPFCSF-ELVFGVSLSTILRSGIPLKKLISLFEGEKFMVA-QADDHPREAKKPKLV-ICVAEESTPRDYLRAYITAHVI 396          
BLAST of mRNA_E-siliculosus-1a_F_contig1014.147.1 vs. uniprot
Match: A0A482SIE4_9ARCH (RUS1 family protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SIE4_9ARCH)

HSP 1 Score: 238 bits (606), Expect = 2.120e-66
Identity = 127/235 (54.04%), Postives = 167/235 (71.06%), Query Frame = 1
Query:  808 NTFLPAGYPGSVRPEYVRYRCWDILQDLSSHLRGVLATQAVLEGMGVGRAGSTPLAATLQWMARDGASMIGGLLFTSVASANFGVNIKTWRLFADTSNDIGLALEMLAPLPAFREGGRFLRLICIASVFKAACGVAGGATGAAITEHWAID-NNIADIGAKNGAQHTVASLLGLGLSVWFARAVSVGGSASGSRVWGWYAVLTLVHLLANYAAMRTLALRSLNPTRASLLVTEFL 1509
             TFLP GYP +V  EY  Y+ W+++QDL S+LRG++AT AVL GMGVGRA  T + AT+ W+ RDGAS+IGGLLFTS++S NF  NIK WRLFAD+ N++G+ L+ML P         FL L+C+ S  KA CGVA GAT AAI+ HW     N+ADI AKN AQHTV SL GL +S+ FA+   + G+ S +R+W  Y++LT+VH+++NY AMR LALR+LN  R  +++  FL
Sbjct:  100 QTFLPLGYPKTVPAEYTAYQAWNVIQDLCSYLRGIMATNAVLAGMGVGRADITSIQATILWVLRDGASLIGGLLFTSLSSYNFVQNIKFWRLFADSINNVGITLDMLTPYFPLH----FLPLVCVGSTCKALCGVAAGATNAAISMHWGEKYGNVADILAKNNAQHTVVSLCGLAVSLPFAQ---MAGTISPARLWTIYSILTVVHMVSNYMAMRVLALRTLNRVRFHMILDTFL 327          
BLAST of mRNA_E-siliculosus-1a_F_contig1014.147.1 vs. uniprot
Match: A0A813KE75_POLGL (Hypothetical protein n=3 Tax=Polarella glacialis TaxID=89957 RepID=A0A813KE75_POLGL)

HSP 1 Score: 225 bits (573), Expect = 4.360e-62
Identity = 116/235 (49.36%), Postives = 162/235 (68.94%), Query Frame = 1
Query:  790 VRGGLMNTFLPAGYPGSVRPEYVRYRCWDILQDLSSHLRGVLATQAVLEGMGVGRAGSTPLAATLQWMARDGASMIGGLLFTSVASANFGVNIKTWRLFADTSNDIGLALEMLAPLPAFREGGRFLRLICIASVFKAACGVAGGATGAAITEHWAIDNNIADIGAKNGAQHTVASLLGLGLSVWFARAVSVGGSASGSRVWGWYAVLTLVHLLANYAAMRTLALRSLNPTRASLL 1494
            ++  L   FLP GYP SV  EY  Y+ WD +Q + S+LRGVLATQA+L G+GVG+ G+T LAAT+ W+ +DG+ M+GGL F +  S  F VN+KTWRLFAD +N++GL L++LAP+     G  FL +IC+A+VFKA CGV+ GAT AA+T H+A+ +N+AD+ AK G+Q T  +L+GL    WFA   +     S + VW  + +LTL+H  ANY  +R+L L +L+P+R  LL
Sbjct:   73 LKASLAGAFLPVGYPHSVSKEYFSYQAWDTVQAMCSYLRGVLATQALLRGVGVGKEGATALAATIIWVLKDGSGMVGGLGFATFCSVGFDVNVKTWRLFADVANNVGLTLDLLAPM----AGDYFLLVICVANVFKAMCGVSAGATKAALTAHFALRDNMADVQAKEGSQETAVTLMGLIAGSWFAMVAN----ESPATVWTAFVLLTLLHTFANYTGVRSLLLPTLSPSRLWLL 299          
BLAST of mRNA_E-siliculosus-1a_F_contig1014.147.1 vs. uniprot
Match: W7U4R7_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U4R7_9STRA)

HSP 1 Score: 223 bits (568), Expect = 8.180e-61
Identity = 168/500 (33.60%), Postives = 241/500 (48.20%), Query Frame = 1
Query:  799 GLMNTFLPAGYPGSVRPEYVRYRCWDILQDLSSHLRGVLATQAVLEGMGVGRAGSTPLAATLQWMARDGASMIGGLLFTSVASANFGVNIKTWRLFADTSNDIGLALEMLAPLPAFREGGRFLRLICIASVFKAACGVAGGATGAAITEHWAIDNNIADIGAKNGAQHTVASLLGLGLSVWFARAVSVGGSASGSRVWGWYAVLTLVHLLANYAAMRTLALRSLNPTRASLLVTEFLG--QALGSTEGRSGTRGSEQDXXXXXXXXXXXXXXXXXGEERKGPALDWMGRIRDQGSPPESVAVLSPFAAARRERILV-LPGWFRALKPWGDFLQIHVGVPVRALVGEADDLLWLTSLYHDERSMVGVQVSYKPLGARMETTVNLALREDASPEDRLHAMFQANVIHHLVVRDPDGIPHGEDGVDRTL------------FLRKVTEEALRVTRKEFPAF---------------------RKALVREGWDLSRVTLGGGSW 2190
            G+  TFLP GYP SVR EY+ Y+ WD +Q L S+LRG+L T+A+LEG GVG   ++ L+A + W+ RDG  M   LLF+S+AS +F  N+K WRLFAD SND+GL L+ML  LP+ +  G FL L C+++V K  CGVA G T ++IT H+++  NIAD+ AK  AQ T  +L G+   +  A+ ++   +A     W  +  LT +H+LANY  +  L L SLN  RA++L+ +FL   Q +   EG+ GT+                       ++++G +        D  SP     +L+P     RERI   L  W  A +P        + +P  A       L +L  ++  E  ++    ++ P   R    V +  R  A+P+D L A FQA VI  L +    G    E                    L K+  ++   T   FP F                     R A   EGWDL R+ LG   W
Sbjct:   58 GISATFLPVGYPYSVREEYLTYQIWDTVQALCSYLRGILTTKAILEGSGVGSEAASALSAAMNWVFRDGVGMACSLLFSSMASISFDCNVKEWRLFADISNDVGLTLDMLTGLPSLK--GHFLLLTCLSTVCKTMCGVAAGCTKSSITAHFSLRGNIADVSAKENAQETAVTLFGIVGGLLCAQWIACPETA-----WPVFLSLTALHVLANYKGVVALKLYSLNTQRAAILIDDFLNRDQGMDRAEGQ-GTQ-----------------------DKKRGDSTTIGSSTTD--SPHPLPRLLTPTQVMARERIYQPLWSWLLAQQPCLGSRISDLSLPSPA------HLSFLMRVFSHESYLL----TFAPFSGR----VTVIFRAGATPQDELKAFFQAQVIKRLDLDRRVGNGGREASXXXXXXXXXXXXKWPSPLLGKLVLKSYETTVHRFPIFWAALQSENGKNEIGGEEPRSDRSAAGEEGWDLGRMNLGTRGW 510          
BLAST of mRNA_E-siliculosus-1a_F_contig1014.147.1 vs. uniprot
Match: L1IND8_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IND8_GUITC)

HSP 1 Score: 215 bits (547), Expect = 5.420e-60
Identity = 107/170 (62.94%), Postives = 137/170 (80.59%), Query Frame = 1
Query:  811 TFLPAGYPGSVRPEYVRYRCWDILQDLSSHLRGVLATQAVLEGMGVGRAGSTPLAATLQWMARDGASMIGGLLFTSVASANFGVNIKTWRLFADTSNDIGLALEMLAPLPAFREGGRFLRLICIASVFKAACGVAGGATGAAITEHWAIDNNIADIGAKNGAQHTVASLL 1320
            TFLP+GYP S+  EY +Y+ +++LQDLSS+LRG+L+TQ +LEGMGVG+AG T LAAT+QWMARDG+SM+GGLLFT+ AS++FG++IK WRLFAD  ND+ L L+MLAP  A+ +   FL +IC++SVFKA CGVA GA   AI +HWA   NIAD+GAK GAQHT  S+L
Sbjct:  129 TFLPSGYPASLPDEYTKYQAFNLLQDLSSNLRGILSTQKILEGMGVGKAGVTSLAATMQWMARDGSSMLGGLLFTAFASSSFGIDIKRWRLFADLINDVALLLDMLAP--AYPD--LFLPIICLSSVFKAMCGVAAGACNTAIVQHWAARGNIADVGAKTGAQHTFVSVL 294          
BLAST of mRNA_E-siliculosus-1a_F_contig1014.147.1 vs. uniprot
Match: M4BWZ3_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BWZ3_HYAAE)

HSP 1 Score: 220 bits (560), Expect = 1.900e-59
Identity = 162/492 (32.93%), Postives = 236/492 (47.97%), Query Frame = 1
Query:  802 LMNTFLPAGYPGSVRPEYVRYRCWDILQDLSSHLRGVLATQAVLEGMGVGRAGSTPLAATLQWMARDGASMIGGLLFTSVASANFGVNIKTWRLFADTSNDIGLALEMLAPL-PAFREGGRFLRLICIASVFKAACGVAGGATGAAITEHWAIDNNIADIGAKNGAQHTVASLLGLGLSVWFARAVSVGGSASGSRVWGWYAVLTLVHLLANYAAMRTLALRSLNPTRASLLVTEFLGQALGSTEGRSGTRGSEQDXXXXXXXXXXXXXXXXXGEERKGPA---LDWMGRIRDQGSPPESVAV-LSPFAAARRERILVL----PGWFRALKPWGDFLQIHVGVPVRALVGE-ADDLLWLTSLYHDERSMVGVQVSY-------------------KPLGARMETTVNLALREDASPEDRLHAMFQANVIHHLVVRDPDGIPHGEDGVDRTLFLRKVTEEALRVTRKEFPAFRKALVREGWDLSRVTLGGGSW 2190
            +   FLPAGYP SV  +YV ++ WD +Q + S+LRGVLATQ+VL+ +GVG   +TPLAA LQW+ RDG+ MIGGL F  +    F +N+K WRLFAD  ND+GL L+M+APL P          ++C++S+FK  CGVA GAT +++  H+A  +N+AD  AK G+Q T   L GL + ++FA AV+     S   VW  + VLTLVH+ ANY A+  L + ++N  R S+LV  FL         +SGT  +  D                  +E        L ++G      +   S+ V LSP     +  I  +    P +     P    L +   +   AL  +  D LL + +   D ++ +   V +                   K L   +E  V++  + DA+P D L A FQA ++   +   P   P    G    L+L + T   +     +FP F + L    W      L    W
Sbjct:   72 IQEMFLPAGYPNSVSEDYVSFQLWDTIQAMCSYLRGVLATQSVLQSVGVGNDTATPLAAALQWVLRDGSGMIGGLTFAYLVGPKFDLNVKRWRLFADVVNDVGLTLDMIAPLVPTL-----VTEVLCLSSIFKTMCGVAVGATRSSLMTHFAKRDNMADCAAKEGSQETAVKLCGLIVGMYFANAVN----ESQFAVWVAFLVLTLVHVYANYNAVSCLCIPTVNILRGSILVQRFL---------KSGTCSNSMDNAADQVRTRALLDHDVATDEMNTICCCLLSFVGYCAAAANIFTSLCVRLSPVLYHTKYSIRSVNQKEPVFSNPSLPVTSQLTMGSQLHEAALTSQDLDKLLQIYAYDDDTKACISCNVFFPQLLIFLVAFCMLHVCREEKFLLTVVENHVHVMFQADANPNDELRAFFQAILVLQALTLAPSSPPSSRGGKKGHLYLLESTHHQMMT---DFPLFLQVLENHSWRTHMYLLNTTPW 542          
BLAST of mRNA_E-siliculosus-1a_F_contig1014.147.1 vs. uniprot
Match: W4FX85_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FX85_9STRA)

HSP 1 Score: 208 bits (529), Expect = 9.230e-58
Identity = 114/236 (48.31%), Postives = 154/236 (65.25%), Query Frame = 1
Query:  802 LMNTFLPAGYPGSVRPEYVRYRCWDILQDLSSHLRGVLATQAVLEGMGVGRAGSTPLAATLQWMARDGASMIGGLLFTSVASANFGVNIKTWRLFADTSNDIGLALEMLAPL-PAFREGGRFLRLICIASVFKAACGVAGGATGAAITEHWAIDNNIADIGAKNGAQHTVASLLGLGLSVWFARAVSVGGSASGSRVWGWYAVLTLVHLLANYAAMRTLALRSLNPTRASLLVTEF 1506
            L + FLP GYP SV  EY+ ++ WD  Q + S+LRGVLATQ+VLE +GVG+   TPLAA LQW+ RDG+ M+GGL F  V    F  N+K WRL+AD  ND GL L+MLAP  P +        ++CI+SV KA CGVA GAT +++T H+A  +N+ADI AK G+Q T  +++GL   ++FA AV+     S S VW  + VLTL H++ANY A+  L + +LN  RA L +  +
Sbjct:   71 LFDMFLPFGYPDSVSHEYLTFQLWDTCQAMCSYLRGVLATQSVLESVGVGKDSVTPLAAALQWVMRDGSGMLGGLFFAYVVGPKFDANVKFWRLYADVINDFGLTLDMLAPFFPLY-----VTEILCISSVCKAMCGVAAGATRSSLTAHFAKHDNMADIAAKEGSQETFVNMVGLVCGMYFANAVN----QSRSTVWLAFLVLTLFHVIANYKAVSALCIPTLNVQRAFLAIRRY 297          
BLAST of mRNA_E-siliculosus-1a_F_contig1014.147.1 vs. uniprot
Match: A0A067CAR1_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CAR1_SAPPC)

HSP 1 Score: 212 bits (539), Expect = 1.530e-57
Identity = 114/243 (46.91%), Postives = 161/243 (66.26%), Query Frame = 1
Query:  787 AVRGGLMNTFLPAGYPGSVRPEYVRYRCWDILQDLSSHLRGVLATQAVLEGMGVGRAGSTPLAATLQWMARDGASMIGGLLFTSVASANFGVNIKTWRLFADTSNDIGLALEMLAPLPAFREGGRFL-RLICIASVFKAACGVAGGATGAAITEHWAIDNNIADIGAKNGAQHTVASLLGLGLSVWFARAVSVGGSASGSRVWGWYAVLTLVHLLANYAAMRTLALRSLNPTRASLLVTEFLG 1512
            A+R  L + FLPAGYP SV  +Y+ ++ WD  Q + S+LRGVLATQ+VLE +GVG    TPLAA LQW+ RDG+ M+GGL F       F  N+K WRL+AD  ND+GL L+MLAP        R++ +++C++SV KA CGVA GAT +++T H+A  +N+ADI AK G+Q T  +LLGL   ++FA  V+     S + VW  + +LT +H++ANY A+ +L + +LN  RA+L +  F G
Sbjct:   68 AIRSELFDMFLPAGYPSSVTEDYLPFQLWDTCQAMCSYLRGVLATQSVLESVGVGNEAITPLAAALQWVMRDGSGMLGGLFFAYGVGPKFDANVKFWRLYADVINDVGLTLDMLAPFAP-----RYVTQILCVSSVCKAMCGVAAGATRSSLTAHFAKADNMADIAAKEGSQETFVTLLGLLTGMYFANLVN----QSRASVWVAFLLLTAIHVVANYKAVTSLCIPTLNQARATLAIRSFRG 301          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1014.147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLL8_ECTSI0.000e+092.39Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7U3D2_9STRA3.740e-8439.55Uncharacterized protein n=2 Tax=Nannochloropsis ga... [more]
A0A7S0EV14_9CRYP1.770e-7240.30Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A482SIE4_9ARCH2.120e-6654.04RUS1 family protein n=1 Tax=archaeon TaxID=1906665... [more]
A0A813KE75_POLGL4.360e-6249.36Hypothetical protein n=3 Tax=Polarella glacialis T... [more]
W7U4R7_9STRA8.180e-6133.60Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
L1IND8_GUITC5.420e-6062.94Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
M4BWZ3_HYAAE1.900e-5932.93Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
W4FX85_9STRA9.230e-5848.31Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A067CAR1_SAPPC1.530e-5746.91Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1014contigE-siliculosus-1a_F_contig1014:3753..13342 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size2217
Model size2226
Exons12
Ec32 orthologEc-17_000660.1
Ec32 ortholog descriptionRoot UVB sensitive family
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGsKOG4249@1,KOG4249@2759
EggNOG free text desc.response to UV-B
Preferred nameC16orf58
Seed eggNOG ortholog2880.D7FLL8
Seed ortholog evalue0.0
Seed ortholog score1206.0
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927516.187847-CDS-E-siliculosus-1a_F_contig1014:3752..38701622927516.187847-CDS-E-siliculosus-1a_F_contig1014:3752..3870Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1014 3753..3870 -
1696318563.392332-CDS-E-siliculosus-1a_F_contig1014:3752..38701696318563.392332-CDS-E-siliculosus-1a_F_contig1014:3752..3870Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1014 3753..3870 -
1622927516.1983058-CDS-E-siliculosus-1a_F_contig1014:4733..48521622927516.1983058-CDS-E-siliculosus-1a_F_contig1014:4733..4852Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1014 4734..4852 -
1696318563.4028091-CDS-E-siliculosus-1a_F_contig1014:4733..48521696318563.4028091-CDS-E-siliculosus-1a_F_contig1014:4733..4852Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1014 4734..4852 -
1622927516.2132547-CDS-E-siliculosus-1a_F_contig1014:5731..58041622927516.2132547-CDS-E-siliculosus-1a_F_contig1014:5731..5804Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1014 5732..5804 -
1696318563.4116628-CDS-E-siliculosus-1a_F_contig1014:5731..58041696318563.4116628-CDS-E-siliculosus-1a_F_contig1014:5731..5804Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1014 5732..5804 -
1622927516.2227294-CDS-E-siliculosus-1a_F_contig1014:6451..65791622927516.2227294-CDS-E-siliculosus-1a_F_contig1014:6451..6579Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1014 6452..6579 -
1696318563.4208121-CDS-E-siliculosus-1a_F_contig1014:6451..65791696318563.4208121-CDS-E-siliculosus-1a_F_contig1014:6451..6579Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1014 6452..6579 -
1622927516.231751-CDS-E-siliculosus-1a_F_contig1014:7333..76061622927516.231751-CDS-E-siliculosus-1a_F_contig1014:7333..7606Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1014 7334..7606 -
1696318563.4299827-CDS-E-siliculosus-1a_F_contig1014:7333..76061696318563.4299827-CDS-E-siliculosus-1a_F_contig1014:7333..7606Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1014 7334..7606 -
1622927516.2453487-CDS-E-siliculosus-1a_F_contig1014:8241..84691622927516.2453487-CDS-E-siliculosus-1a_F_contig1014:8241..8469Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1014 8242..8469 -
1696318563.4444993-CDS-E-siliculosus-1a_F_contig1014:8241..84691696318563.4444993-CDS-E-siliculosus-1a_F_contig1014:8241..8469Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1014 8242..8469 -
1622927516.258055-CDS-E-siliculosus-1a_F_contig1014:9330..95461622927516.258055-CDS-E-siliculosus-1a_F_contig1014:9330..9546Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1014 9331..9546 -
1696318563.4585917-CDS-E-siliculosus-1a_F_contig1014:9330..95461696318563.4585917-CDS-E-siliculosus-1a_F_contig1014:9330..9546Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1014 9331..9546 -
1622927516.2757573-CDS-E-siliculosus-1a_F_contig1014:10016..100841622927516.2757573-CDS-E-siliculosus-1a_F_contig1014:10016..10084Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1014 10017..10084 -
1696318563.4676776-CDS-E-siliculosus-1a_F_contig1014:10016..100841696318563.4676776-CDS-E-siliculosus-1a_F_contig1014:10016..10084Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1014 10017..10084 -
1622927516.286157-CDS-E-siliculosus-1a_F_contig1014:10511..106291622927516.286157-CDS-E-siliculosus-1a_F_contig1014:10511..10629Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1014 10512..10629 -
1696318563.4786844-CDS-E-siliculosus-1a_F_contig1014:10511..106291696318563.4786844-CDS-E-siliculosus-1a_F_contig1014:10511..10629Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1014 10512..10629 -
1622927516.2953112-CDS-E-siliculosus-1a_F_contig1014:11377..115511622927516.2953112-CDS-E-siliculosus-1a_F_contig1014:11377..11551Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1014 11378..11551 -
1696318563.486543-CDS-E-siliculosus-1a_F_contig1014:11377..115511696318563.486543-CDS-E-siliculosus-1a_F_contig1014:11377..11551Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1014 11378..11551 -
1622927516.306771-CDS-E-siliculosus-1a_F_contig1014:12245..124071622927516.306771-CDS-E-siliculosus-1a_F_contig1014:12245..12407Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1014 12246..12407 -
1696318563.4946852-CDS-E-siliculosus-1a_F_contig1014:12245..124071696318563.4946852-CDS-E-siliculosus-1a_F_contig1014:12245..12407Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1014 12246..12407 -
1622927516.3207982-CDS-E-siliculosus-1a_F_contig1014:12793..133331622927516.3207982-CDS-E-siliculosus-1a_F_contig1014:12793..13333Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1014 12794..13333 -
1696318563.5027092-CDS-E-siliculosus-1a_F_contig1014:12793..133331696318563.5027092-CDS-E-siliculosus-1a_F_contig1014:12793..13333Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1014 12794..13333 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927516.3336833-UTR-E-siliculosus-1a_F_contig1014:13333..133421622927516.3336833-UTR-E-siliculosus-1a_F_contig1014:13333..13342Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1014 13334..13342 -
1696318563.5108883-UTR-E-siliculosus-1a_F_contig1014:13333..133421696318563.5108883-UTR-E-siliculosus-1a_F_contig1014:13333..13342Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1014 13334..13342 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1014.147.1prot_E-siliculosus-1a_F_contig1014.147.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1014 3753..13333 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1014.147.1

>prot_E-siliculosus-1a_F_contig1014.147.1 ID=prot_E-siliculosus-1a_F_contig1014.147.1|Name=mRNA_E-siliculosus-1a_F_contig1014.147.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=739bp
MLVSMTQPVYNWLGTGVLAFSSPRRTLAEGQSGTSCSTTCSSMLRSCNLS
PPLPAGYSRGVRKRCAMAAFTTANEITTMGHKKGGVFCLRGGSDAEGDAL
QVGGEEENVKRETPTATRASAADSEDEAWPGAEEEGAPFGGVALVTERST
ATGGSKDRVSYSVLADGTLEVGLAAERKEPRLPTSTAPSKPPHLPTIPPP
SRENTAVANAPAGSRRVLQGVRRHAGDLKTGVVEATKEVSRETRAAAAAA
GACVARAGVAVRGGLMNTFLPAGYPGSVRPEYVRYRCWDILQDLSSHLRG
VLATQAVLEGMGVGRAGSTPLAATLQWMARDGASMIGGLLFTSVASANFG
VNIKTWRLFADTSNDIGLALEMLAPLPAFREGGRFLRLICIASVFKAACG
VAGGATGAAITEHWAIDNNIADIGAKNGAQHTVASLLGLGLSVWFARAVS
VGGSASGSRVWGWYAVLTLVHLLANYAAMRTLALRSLNPTRASLLVTEFL
GQALGSTEGRSGTRGSEQDEDDGEEENEEREEEEEGGEERKGPALDWMGR
IRDQGSPPESVAVLSPFAAARRERILVLPGWFRALKPWGDFLQIHVGVPV
RALVGEADDLLWLTSLYHDERSMVGVQVSYKPLGARMETTVNLALREDAS
PEDRLHAMFQANVIHHLVVRDPDGIPHGEDGVDRTLFLRKVTEEALRVTR
KEFPAFRKALVREGWDLSRVTLGGGSWVGRWGSLAKED*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1014:3753..13342-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1014.147.1 ID=mRNA_E-siliculosus-1a_F_contig1014.147.1|Name=mRNA_E-siliculosus-1a_F_contig1014.147.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=9590bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1014:3753..13342- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCTCTCTAGATGCTTGTGAGCATGACTCAGCCGGTGTACAACTGGCTCGG CACTGGAGTTCTTGCATTCTCCTCGCCCCGCCGCACATTGGCCGAAGGAC AAAGTGGCACTTCCTGTTCGACGACATGTTCTTCCATGCTGCGCTCCTGC AACCTCTCCCCGCCGCTGCCGGCGGGGTACAGCAGGGGCGTTCGGAAGCG GTGCGCCATGGCCGCCTTCACCACCGCTAACGAAATTACGACAATGGGGC ACAAGAAGGGTGGTGTTTTCTGCCTGAGGGGTGGGAGTGACGCCGAGGGA GATGCTCTGCAAGTCGGCGGGGAAGAAGAGAACGTGAAGCGGGAAACTCC AACTGCCACCAGAGCCAGCGCCGCCGACAGCGAGGACGAGGCCTGGCCAG GGGCAGAGGAGGAAGGAGCACCCTTTGGCGGGGTTGCTCTCGTCACCGAG CGTTCAACGGCAACAGGCGGGAGCAAGGATAGGGTCAGCTACAGCGTTCT TGCCGACGGGACCCTCGAAGTTGGTTTAGCTGCTGAACGAAAAGAGCCGG TGCGAAAAACAGGTTCACGTTGCACCTTTTCGTTTGACCTGTACACGTGC CTCGCCTAGGGTATGTAGCTACCGGTAACAGCGTGGTGGTCGTTGATTGG TTTGGACGACACAGCAGTTCAGCGTTGGAGGGAGGAATAACATGGTACCA GGTTTGCGCATGACTGCCGTTACTTTGGCTAGCCTACCCGATACTACTAC TGGGTGTTTGCGAAGGCTTTGCGCCCACGGGGTCAATGTGACGGCAGCGA AGGCATCGATAGTCTACAGCTTTGGCAGCGGTTTCGAGAATAGTGGCCTT AGTGCTGTTACCGTCGTTGGTTTCTGTGATACTATTCCAACCCGTGCACC GCGCCCCTGACGCATTGACATGCTCGTTCTCTCAGCGATTACCGACGTCG ACAGCACCATCAAAGCCACCACATCTTCCGACAATACCGCCACCATCGCG GGAGAACACGGCCGTCGCAAACGCCCCCGCGGGTTCACGAAGAGTGCTGC AGGGTGTACGACGGCATGCCGGGGACTTGAAAACGGGCGTTGTAGAGGTG ATGCGAGACCTGACGTAGACTAGGACGTGTTCGTATTGTGTTGTGTATAT CGATCGGCCTGCAGTTGTAGCGTGGGTGGTGGTAGTGGCGTGGGCGTGGT GAAAAAATAATCGAAAGTCACCTGTTTCGTGTATTTTGGTCCGTCGTGCT TCCATTAAATCATGTTTGTTTTATCTGTTGGGCTGACGCGCACAGTCGTA TGACCTATTAATGTGCAAATGCAAGCGCGCAATGAGAAAATCAATGCTTG TAGTGGCACGTTTACATGCATTCTTGAATTGAAGCCCGCTAGAGGCCTTG ACGATAGAAAAACGGGCATGTGTTCCCCAACGACAGATCAATCCGAGGGT CCATGGAAGCACGCGCATGTGCTTGGCTCCTATTTTGCCAAGTGTCATTG AACAGCTTTGTGACAGTAGTGTATCCACAACACCATCCATGCTGAAGCTC GTCTCCTTCAGACAGCTTCATCCTGTCATAAGCAGGCCTTGTCGTGGCGT ACATGCCCCTCCCCCTGTACATCTTCCATCAGGACCCCTTTGTCCGAAGA GGGCCCTTTTTTCATCCCCAAGCATGCAGACTAAGCCTACATGCGTCCCA CAACTAGCATGAACTTCTAGCAGCAACTCCCACCTGCCTGCCTGCGCGCC TGGCCGGTAATCATCGTGCTCGCACCGCTGTCGGACCAAAGGCGACAAAA GAAGTTTCTAGAGAGACGAGAGCCGCAGCGGCGGCGGCGGGAGCGTGCGT GGCAAGGGCCGGGGTGGCGGTACGCGGAGGCCTGATGAACACCTTTCTGC CGGCGGGGTACCCGGGATCGGTGCGGCCGGAGTACGTGAGGTACCGCTGC TGGGACATCCTTCAGGTGGGATGTGCATGTGTGGGAGGTACCATGTCCGA AGTCTTCGCTTCGACAGGGTGGGGACGGGGGGCCGGGGGCGGGGGGCGGG GGATGGGTGCCCACGGGGCTATCGCGTTGTACCTGGTACTCGTTTCGCTG TCGCTATTGTGGTTTTGCACGTGTTGCCTCCTGTGCCAGGTGTGCGTATA GGTCAATATCGTAGCAGGTGTAGGGGCCGCAGTAGGCGAAATTGCACATT GGCTGTGTAACGTTCAGCAGCGGTGGTCTTGTGTGGCTCTCCGTTTTGCA CGTCAGGGCCGCTGTTCAGTGTGTGCTCGGAAGCCTCCCCTAGGCCGTGC TTGCTCTCCAGCGTAAGAAAATGTTGTCGGTACGCAATTCGTGTTAGAAG GTGGGCGAAACACATCGCTGTAACGCATACCATGTGAGGCGTCGGCGGCA AGCCCCGTTTTCGCGCCCAATTTAGTCTCGAAGTTTGTCATATGCTTCAT GTTTGTCGTTCTACACGTGGATGCCTTATTGTATCATGCGCCGTATTTTC ATGGCTGTTGCACTGTGCTGTGTGTGGGATATAATTCCTGTCACACACCC CTGAATTGTTTTTGTCACAGATGACAGAAGACAAGAGCACAGTCAAGCTC TGAAACAAGTGTGGCAGCGCAGGACGTGCACACAAGTATCGTGTTGGACT CAGATTTGTCGGTACGCCACCCCCCCCCCCCCGCCTCGGCGACGAATCCC TGACGTTCCTTAGGACCTGTCCTCACACCTTCGGGGCGTTCTAGCAACAC AGGCGGTGTTGGAGGGCATGGGTGTAGGTCGGGCAGGTTCGACGCCCCTA GCCGCCACGCTACAGTGGATGGCACGAGACGGTGAGTTTCGGCTTTGATG GTGTTTCTTCCCGTGTTGGATCTTGTCTTTTCCCCGAGTAGGACGTATCG TCTACCCTTCTACACCGGTGATTCCTTTGTCTTGGTCACGCCCGGCACGT GTGATTTCGGTGCATTCAGCAGCAGCATGAGAGGTAGCAGCCATAGTATG GAAACAGGAGAAGCGGCAGTAGTCAGAATCCGCAGCATATCAGTAGTAAA TAGTAGAAACAGTAGCACACAGTAGATGTGTTCTCATTCGTCTTGGCGTT ACAACTGCAGCCGCTGCCGTTCTCGGTGCGTGCGTAGTACCTGCTGCTAC AGCGACTGGCGTTGCTTCCGATAGATCAAACCTCTACGGAGCCTGCCGCA GTAACCCTCCGGCTGTGGCCTCTGCTACTGCCGCGTTCGGCGCACAATTG ATGTTCAGGTGCCAGCATGATCGGGGGTCTCCTGTTCACCTCGGTGGCGT CAGCTAACTTCGGCGTCAATATCAAGGTGACAAACCATATACAAATAGAG TGAAAATTATGATTTGTTTTTTGAGGGGGTGGTTGACCTGTGACCACACA AAGCGTCGGCGTCGTTTGGAACGGTACGGATGTTTTGAAGGCACCGAGCA GAAACCGGAACGGTTTCTAACGTGAAGACAATGGCAACATCAATGATGAT CAAGGTAGATAGCCACCTTTGGTGTTTGCTGATGAACACTTACGCTGCGA CTTGGTTGTACTCGTGCTGCTGTGCTTGCGGAGAATCAGTACGTCGCACA CTTCGAGAATCATCCCGTGCGGTGTTCTGTACCGCAGAGCTTCAAACCGA TGTACTGCTACACGAGAGTGCAGATAGGCGTTCTCTCGCCGCAAGCACCG TAAACCACCGTCGTTGATCTCATTGGTCAATACTCACCCGCCCCTGCGCC CTGGATCTTCCGGCACAAATCATGTGTACTTCCCATACGACGATAGACCT GGCGATTATTCGCGGACACCTCAAACGACATCGGGCTCGCCCTCGAGATG CTGGCGCCTCTGCCCGCTTTCCGAGAGGGCGGAAGGTTCTTGCGTCTCAT CTGCATCGCTTCGGTCTTCAAGGCGGCATGCGGGGTTGCGGGGGGCGCCA CTGGAGCCGCTATCACCGAGCACTGGGCCATCGACAACAACATCGCAGAC ATTGGTGCTAAGGTAAGGCGAGGGTGGCAACGGACTTTCTTCGTTACATC TGTAGATGGTGCCGACAGCTTTAACGCGACCCTGAAATATCGGTGGTTGA GAGAGTACCGGAGAACTTGGGAGAACAGGCAGGGGGCTCAGTGACATCAA TAACAGTGATGGGGAGTGGGGATGAAAACGGTGTAACTGTCTTGCCTAGG CCACGTGGCTAAACATCGTCCCTTGCCTTTCGAGGGAAGAGATCGCCACA CCCCTGCCGACAAAGCCGTGAAGGCACGAGGGGCAGGGAGCTCGGCAGCG TTAGAGGGCACGGGGTGTAACAATCGTGTCTTGCTTGCGTACCGACAGCA GGTTATCGTGGTGTTCTCCTGCCGTAGCTTCCTCTTCTCATCTCCGTACC ACTGATGCGCAAGTCGGCGGAACGTTTGAATCAGCGTCGGTTTTCAATCT TTCTGCAACCTTCTCATCCTCGCCACGCGAAACCTCACCTTGAGGCACCA ACTAGATACGCTACTGTCGCCGTAGGTTTAAGGACTGAACGGGCGGCGAT TCGTTTGTTTTGACTTGACTAGAAGAGAACGTAGGGTGCTGGATCGAGGG CGGCATACATTTTCGCGTGAAGCAAACAGCAGCAACAAGCAACAGCGACA GCAGAAACAACGACAGCAACCGAAACCCTAATGTCCGCCCCCCCCCCCCC CCCCCCCCCCCCCCCCACACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC CCCCCCACCCCCCCCNNNNNNNNNNAGACAAAAAAACGAAACAACAAAAA GCCAAACAAAAAAAAACAACAACCCACCAAACCCCACTGCCCCCCCCCCC CCCCCCCCCCTCCCCACGCTCAGAACGGGGCACAGCACACGGTAGCCTCC TTGCTCGGGCTTGGGCTCTCGGTCTGGTTCGCGAGGGCCGTTAGCGTCGG GGGCTCCGCGTCTGGATCGCGCGTCTGGGGGTGGTACGCGGTCCTCACCC TGGTCCACCTGCTGGCGAACTACGCGGCAATGAGGACCCTAGCCCTGCGG TCTCTGAATCCGACGCGGGCTTCGCTCTTGGTCACGGAGTTTCTAGGCCA GGTGCGAGAGGGCGCCGCGTTTGTAGGGGTAGGCGTGCGGGTTTGGGGAT GGGGGGCAGAGGATGGCGCAGGTATGATATGGGGTGGGGTAGGTGTCAAT GGTGTTTGGTTGTTGTGGTTACAAGGGAATCGCTTCTTGTTGGTTCCCTT GGCCAACTGCGCGGTGGGCTTCATGGGTGGTGGTTTTTGGACGTTTGTGT TGCCAGTTGACGTTTTTGCTGCCGGGTGTGGCGTACTCCTGTAGGAAGCT TCGCGTTTCGGGCGGCTGCGGCTATGACGTGCACACGTTTTGCGCCAAGC AATCCAACTGCGCTGGGGTCACCACCATGTTCTGTTTTCGCCTTACGACT TCATCACTGCTTGCAACCTGTGCAAGAATTGGCGTTGGGTTGGGTGGGGA GGTCTTCGCAATGACGGTCCCAATGTCGCCTTAAACAACTAAATATGCCC GCGTTGTCTTCAGGTCCGCAGGACTGTTAGGTCGCGACCAATCCGCGTCG GGCATGTCGAATTGCTGCTGCCGTTGTCCCCTATTTTGCTTGTCTGAACA ATTCGCGTCTCGTGCTTCTTCTGCGCTTACCGGTGCCCTCAACGGGGGTG TGTGGCGTCGTCGTCGACGGCGTCTTGGGCGCGAAGGCCTTGGGGTCTAC GGAAGGCCGCAGTGGCACACGAGGAAGCGAGCAAGACGAAGATGACGGGG AAGAAGAAAACGAAGAGCGAGAGGAGGAAGAGGAGGGGGGAGAGGAGAGA AAGGGTCCGGCGTTAGACTGGATGGGGAGAATAAGAGACCAAGGGTCTCC GCCAGAGTCGGTGGCGGTGCTTTCGCCCTTTGCCGCCGCGAGGCGGGAGA GAATACTCGTGCTCCCCGGGTGGTTCCGGGCCTTGAAGCCGTGGGGAGAC TTCCTGCAGGTGACGAGACTGCTGTGATATGAAAATCCAGTGGTTGTCAA CAAATGATATTTAGCAGTTTAGACTGTGATATGAAACATTAAAGTATTTT TCGTTCTGTTTGGAATTCGTTGAGACCGTCCTGAGGCCACGATATCTCGG TCGTACAGTAGTCCTCCGTAGACATCTCGGCTGTTCGTGTTTTCTGTCCG AATTTCGGGCGCGGCATGTTGCGGAGGGGTCAGGACGAGAGCAATGGTGA CGTCACGTTGCTGACGCGCGTGCACGATAATGTCTACGGGAGGACATCCC ATGTTTGCGAGGAAAACCCCGCCCCCCTGGTCGGAACGTGGGTGTGGTTC ACCCCACCGTGGCCGTATTGCTTCGCACTGCAGGGAACGAAGAGTACGTT GTCGTATGATAGGGTATAGATGGCCGCTCGGACAGTTCGGGTTATGCCGC CGCAGATGGGAAAGTGAGTTGCTTCAACAACGATTTCATGCGTGCCATCG TATTTGGAAAGACCGATGCGAAGGCGTGCTGAGCGTGAGCTTGGTTGGGG CCACGCCGACGCTCGGCAAGTTCTAGGGCGCAAGGTCTCTTGTTTATTGT GACAGTCTTGACCACCGGGTGTGTGTCCGCATTCGTACCTTTACACCTTA CAAACTGTCTTTGAGTCGTGAGACCTGATTCGGCTGAAGAGCTCCGTGAA CACCCTTGCACGACGTGTCCGGAAGCTTAACATTATGTCGTTGCGTGCTC GCGTGGTTGTCAGATACACGTGGGGGTACCGGTCAGAGCCCTGGTGGGAG AGGCCGACGACTTGCTCTGGCTGACGTCGCTGTACCACGATGAGAGGTCC ATGGTGGGGGTCCAGGTGTCCTACAAGCCACTAGGGGCGAGGTGAGTGTC ATCTAACGGAGCGTTAGCGAGGCGTGACGTCTTGTAAGCCGTTGAACATT CAGTTTTTAACGGTTGTTGTTGTTGTTGTTGTTACTGATTATGTTGTTGT TTTGTGAACGACGTTTGCACACGTTATTCAAGGAGCGAGGTGAGCCTTTT TCTTGCGTTCACGGTAAGTGAAACGCCCCCTCCTGAACCCAAAGACAAAA ACAACGTGCACGGTAAAGCACAAAGTGTAGGTGTCCTTCAAGTCGCCAGA GGAAGTGCGGTGGTCGCACAGGCAGTAGTCCCGTGAACAGTCCTGATGAA ATCAAGTAGGACACGAGTGAATCATGCAGGTCAGGCGGCAAAGTATAGGT CGTGCCATACCTCTGAGCGCATGTCTTCGCTCCTACCCATAAACGCAAAG CCACCGTGCCAGCAGGGCATTCGAAATACCGTGTGCTTTCGTGTGGGGTC TTCGAACTTTGAAGGTTGGCTGCTCAAATATCTTATCTACCAATTGTAAG GTTGCTGCCGGTTCTGCACGAAGGGTTTGCGGAGTGAATTAAACGTCAAA AGGCTCGTAAGACAAATCGTTCTACGTACATCGACCCTCACAATACACGT TGTTTCTTCGGCGCCGTTGCCTTGGCGGACACAATCAGGATGGAGACGAC GGTTAATCTTGCCCTTCGAGAAGACGCCTCTCCGGAGGACCGGTTGCACG CTATGTTCCAGGTTCGTCGTTAGTGCTGTTGCTGCTGTTGCTGCTGTCTC TTTGATATTTATTTATAGCCTACTTTTTTGTTGTTTTTGCGCTTGCACGA AGATGCTTGAAATACATCCAAAAAGCCACGCGCAAACCAGGGTTATTTGT TGTTTTTATCGCCGCTTCACGCTCTTCTCTGTGTTATGTGCGAAGTATAC AGAGCTCACTTCCTGCGTGGCCAACAGCGGACGTCCTTCACGCTCACCAT GTACCTACCTCGCCCGCGCGAACGTGTCGGTTGTGTCTCCCTCTCCCTTC TCGGCCTTTGTTTCTTTCGTAGTTGAACGTTTCACGCCCTGAAGATACTG GTAGAACCAGTTCGACATCCACGCACAGCGCGTGGCATGTGCTATAGTTA GATTTTGTTTTTCGGATCGAAGCGGCCGAGCTCCGTTTTTCACCGTACCT AAAATGTCTGCCAAGCAATGATTCGCCTCGTTCATTTGCTGCTGTATGTG CCTTAAAGGTGTAACCAAATGAACACCTCTTGTATACGTTGCTGTATTGC TGTTTGTTACGTCTAGCAACTATATGGTGCACATGTTGATACGCTGTACT GCCTTGTGTCACCGCTATCAACAAATGATGCACCTCATCTCTATGTTGCT ATGCTGCGTCTTACCAATGGCAGCGAAATGATGCACCTCTTGTATGCATT GCTGTGCTTTGTCTTACGGCTAGCAACAGATGGCGCAACTCTTGAATAGG TTGCCGAAATTTTCTCGACCGTGGCAGTGTATCCGCACCTCCTACTACCG TACAACATTGTATTCTACAACATTGTTTTGACAACATTACAACATTGTTG TTACATCATTGCATGTGTTCAAAATTGTTGACAATGTCAGGCGAACGTGA TCCACCACCTGGTGGTGAGAGACCCGGACGGCATTCCGCACGGGGAGGAC GGCGTCGACCGCACCCTGTTCCTGCGCAAGGTTACCGAAGAGGCGCTACG TGTGACAAGGTGCGGGTGCAGACACCGTGGATACAGCGGTAGGGGTGACA ATGGACACGTTGGGCGGGGGTGTAGACTGGTGAATGCTGCGGGGGGCATG ACAAGGTGCTCGTGTGGACACGTGGATGCAGTAGGCGCTGGGCGTAGTCG TTTTCATTCGATTTAAAATGAACCCACCAGGGTGCAACATTTCCGCCCGT CCTGATAGTTTTGTCGGCGAACACCCTCGTGGCCTTGTGATGGCCATGGT CTGGGTTCGATTCTCGGCGAATTAAAACGTGTCCAGCTGAGGGGGACAGA CTGTACCGGCGGCTTACACAGTAGATCCACAGCGCTAACGGTCCCTGGTT TATTTTCTCTCGGTCCCTAGCTTGTTTTTCTCTCGGCACAACCGGCTAGG CCTGACATGCTGCGTGGTGAACTAGCCGACCTGCTTGACGGAGCTTGCCG CCGCGGGGAAGTCGACCTTGTGCCACCCCGCCACTACCCATACGATAGTC GTGGCTGCTGCGGCTGGGGTGGTGGTGGTGGTCGTAGTGGCTGTGGCTGC TGCGGCTCGCGCCGTTTCCCATGGCACCTCACCGCTCTGAAACGCAGTCT CACAACTGCTCGCCGCCAGCTTGTTGACCGGCGATCTCAAGTCACTCACT TAAACGTAGCCGAGAAGGGATGGATTGCTTGGGGCGTTTGTGGCGGGCAC CTGCCTGATCGTCCTTGAACCACGCAAAATTTCCTTCTGTTCCTATCGCT ATCTGCATCTCCCCCCTTCTGCCCGCGTTGATTTCGGTCGTGCGCTCTCT TTCGCCTACTTCTTCTGACACACGGCATAAACGAACAAGTCAACCTCCCC CCGTTGCGCGCGCGACACACAGAAAGGAGTTCCCAGCCTTCCGAAAGGCG CTGGTTCGGGAGGGGTGGGACCTGTCTCGCGTGACCTTGGGAGGGGGGTC ATGGGTGGGGCGGTGGGGATCGCTGGCGAAGGAAGATTGA
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1014:3753..13342-

>mRNA_E-siliculosus-1a_F_contig1014.147.1 ID=mRNA_E-siliculosus-1a_F_contig1014.147.1|Name=mRNA_E-siliculosus-1a_F_contig1014.147.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=4434bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1014:3753..13342- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCTTGTGAGCATGACTCAGCCGGTGTACAACTGGCTCGGCACTGGAGT
TCTTGCATTCTCCTCGCCCCGCCGCACATTGGCCGAAGGACAAAGTGGCA
CTTCCTGTTCGACGACATGTTCTTCCATGCTGCGCTCCTGCAACCTCTCC
CCGCCGCTGCCGGCGGGGTACAGCAGGGGCGTTCGGAAGCGGTGCGCCAT
GGCCGCCTTCACCACCGCTAACGAAATTACGACAATGGGGCACAAGAAGG
GTGGTGTTTTCTGCCTGAGGGGTGGGAGTGACGCCGAGGGAGATGCTCTG
CAAGTCGGCGGGGAAGAAGAGAACGTGAAGCGGGAAACTCCAACTGCCAC
CAGAGCCAGCGCCGCCGACAGCGAGGACGAGGCCTGGCCAGGGGCAGAGG
AGGAAGGAGCACCCTTTGGCGGGGTTGCTCTCGTCACCGAGCGTTCAACG
GCAACAGGCGGGAGCAAGGATAGGGTCAGCTACAGCGTTCTTGCCGACGG
GACCCTCGAAGTTGGTTTAGCTGCTGAACGAAAAGAGCCGATGCTTGTGA
GCATGACTCAGCCGGTGTACAACTGGCTCGGCACTGGAGTTCTTGCATTC
TCCTCGCCCCGCCGCACATTGGCCGAAGGACAAAGTGGCACTTCCTGTTC
GACGACATGTTCTTCCATGCTGCGCTCCTGCAACCTCTCCCCGCCGCTGC
CGGCGGGGTACAGCAGGGGCGTTCGGAAGCGGTGCGCCATGGCCGCCTTC
ACCACCGCTAACGAAATTACGACAATGGGGCACAAGAAGGGTGGTGTTTT
CTGCCTGAGGGGTGGGAGTGACGCCGAGGGAGATGCTCTGCAAGTCGGCG
GGGAAGAAGAGAACGTGAAGCGGGAAACTCCAACTGCCACCAGAGCCAGC
GCCGCCGACAGCGAGGACGAGGCCTGGCCAGGGGCAGAGGAGGAAGGAGC
ACCCTTTGGCGGGGTTGCTCTCGTCACCGAGCGTTCAACGGCAACAGGCG
GGAGCAAGGATAGGGTCAGCTACAGCGTTCTTGCCGACGGGACCCTCGAA
GTTGGTTTAGCTGCTGAACGAAAAGAGCCGCGATTACCGACGTCGACAGC
ACCATCAAAGCCACCACATCTTCCGACAATACCGCCACCATCGCGGGAGA
ACACGGCCGTCGCAAACGCCCCCGCGGGTTCACGAAGAGTGCTGCAGGGT
GTACGACGGCATGCCGGGGACTTGAAAACGGGCGTTGTAGAGCGATTACC
GACGTCGACAGCACCATCAAAGCCACCACATCTTCCGACAATACCGCCAC
CATCGCGGGAGAACACGGCCGTCGCAAACGCCCCCGCGGGTTCACGAAGA
GTGCTGCAGGGTGTACGACGGCATGCCGGGGACTTGAAAACGGGCGTTGT
AGAGGCGACAAAAGAAGTTTCTAGAGAGACGAGAGCCGCAGCGGCGGCGG
CGGGAGCGTGCGTGGCAAGGGCCGGGGTGGCGGTACGCGGAGGCCTGATG
AACACCTTTCTGCCGGCGGGGTACCCGGGATCGGTGCGGCCGGAGTACGT
GAGGTACCGCTGCTGGGACATCCTTCAGGCGACAAAAGAAGTTTCTAGAG
AGACGAGAGCCGCAGCGGCGGCGGCGGGAGCGTGCGTGGCAAGGGCCGGG
GTGGCGGTACGCGGAGGCCTGATGAACACCTTTCTGCCGGCGGGGTACCC
GGGATCGGTGCGGCCGGAGTACGTGAGGTACCGCTGCTGGGACATCCTTC
AGGACCTGTCCTCACACCTTCGGGGCGTTCTAGCAACACAGGCGGTGTTG
GAGGGCATGGGTGTAGGTCGGGCAGGTTCGACGCCCCTAGCCGCCACGCT
ACAGTGGATGGCACGAGACGGACCTGTCCTCACACCTTCGGGGCGTTCTA
GCAACACAGGCGGTGTTGGAGGGCATGGGTGTAGGTCGGGCAGGTTCGAC
GCCCCTAGCCGCCACGCTACAGTGGATGGCACGAGACGGTGCCAGCATGA
TCGGGGGTCTCCTGTTCACCTCGGTGGCGTCAGCTAACTTCGGCGTCAAT
ATCAAGGTGCCAGCATGATCGGGGGTCTCCTGTTCACCTCGGTGGCGTCA
GCTAACTTCGGCGTCAATATCAAGACCTGGCGATTATTCGCGGACACCTC
AAACGACATCGGGCTCGCCCTCGAGATGCTGGCGCCTCTGCCCGCTTTCC
GAGAGGGCGGAAGGTTCTTGCGTCTCATCTGCATCGCTTCGGTCTTCAAG
GCGGCATGCGGGGTTGCGGGGGGCGCCACTGGAGCCGCTATCACCGAGCA
CTGGGCCATCGACAACAACATCGCAGACATTGGTGCTAAGACCTGGCGAT
TATTCGCGGACACCTCAAACGACATCGGGCTCGCCCTCGAGATGCTGGCG
CCTCTGCCCGCTTTCCGAGAGGGCGGAAGGTTCTTGCGTCTCATCTGCAT
CGCTTCGGTCTTCAAGGCGGCATGCGGGGTTGCGGGGGGCGCCACTGGAG
CCGCTATCACCGAGCACTGGGCCATCGACAACAACATCGCAGACATTGGT
GCTAAGAACGGGGCACAGCACACGGTAGCCTCCTTGCTCGGGCTTGGGCT
CTCGGTCTGGTTCGCGAGGGCCGTTAGCGTCGGGGGCTCCGCGTCTGGAT
CGCGCGTCTGGGGGTGGTACGCGGTCCTCACCCTGGTCCACCTGCTGGCG
AACTACGCGGCAATGAGGACCCTAGCCCTGCGGTCTCTGAATCCGACGCG
GGCTTCGCTCTTGGTCACGGAGTTTCTAGGCCAGAACGGGGCACAGCACA
CGGTAGCCTCCTTGCTCGGGCTTGGGCTCTCGGTCTGGTTCGCGAGGGCC
GTTAGCGTCGGGGGCTCCGCGTCTGGATCGCGCGTCTGGGGGTGGTACGC
GGTCCTCACCCTGGTCCACCTGCTGGCGAACTACGCGGCAATGAGGACCC
TAGCCCTGCGGTCTCTGAATCCGACGCGGGCTTCGCTCTTGGTCACGGAG
TTTCTAGGCCAGGCCTTGGGGTCTACGGAAGGCCGCAGTGGCACACGAGG
AAGCGAGCAAGACGAAGATGACGGGGAAGAAGAAAACGAAGAGCGAGAGG
AGGAAGAGGAGGGGGGAGAGGAGAGAAAGGGTCCGGCGTTAGACTGGATG
GGGAGAATAAGAGACCAAGGGTCTCCGCCAGAGTCGGTGGCGGTGCTTTC
GCCCTTTGCCGCCGCGAGGCGGGAGAGAATACTCGTGCTCCCCGGGTGGT
TCCGGGCCTTGAAGCCGTGGGGAGACTTCCTGCAGGCCTTGGGGTCTACG
GAAGGCCGCAGTGGCACACGAGGAAGCGAGCAAGACGAAGATGACGGGGA
AGAAGAAAACGAAGAGCGAGAGGAGGAAGAGGAGGGGGGAGAGGAGAGAA
AGGGTCCGGCGTTAGACTGGATGGGGAGAATAAGAGACCAAGGGTCTCCG
CCAGAGTCGGTGGCGGTGCTTTCGCCCTTTGCCGCCGCGAGGCGGGAGAG
AATACTCGTGCTCCCCGGGTGGTTCCGGGCCTTGAAGCCGTGGGGAGACT
TCCTGCAGATACACGTGGGGGTACCGGTCAGAGCCCTGGTGGGAGAGGCC
GACGACTTGCTCTGGCTGACGTCGCTGTACCACGATGAGAGGTCCATGGT
GGGGGTCCAGGTGTCCTACAAGCCACTAGGGGCGAGATACACGTGGGGGT
ACCGGTCAGAGCCCTGGTGGGAGAGGCCGACGACTTGCTCTGGCTGACGT
CGCTGTACCACGATGAGAGGTCCATGGTGGGGGTCCAGGTGTCCTACAAG
CCACTAGGGGCGAGGATGGAGACGACGGTTAATCTTGCCCTTCGAGAAGA
CGCCTCTCCGGAGGACCGGTTGCACGCTATGTTCCAGGATGGAGACGACG
GTTAATCTTGCCCTTCGAGAAGACGCCTCTCCGGAGGACCGGTTGCACGC
TATGTTCCAGGCGAACGTGATCCACCACCTGGTGGTGAGAGACCCGGACG
GCATTCCGCACGGGGAGGACGGCGTCGACCGCACCCTGTTCCTGCGCAAG
GTTACCGAAGAGGCGCTACGTGTGACAAGGCGAACGTGATCCACCACCTG
GTGGTGAGAGACCCGGACGGCATTCCGCACGGGGAGGACGGCGTCGACCG
CACCCTGTTCCTGCGCAAGGTTACCGAAGAGGCGCTACGTGTGACAAGAA
AGGAGTTCCCAGCCTTCCGAAAGGCGCTGGTTCGGGAGGGGTGGGACCTG
TCTCGCGTGACCTTGGGAGGGGGGTCATGGGTGGGGCGGTGGGGATCGCT
GGCGAAGGAAGATTGAAAAGGAGTTCCCAGCCTTCCGAAAGGCGCTGGTT
CGGGAGGGGTGGGACCTGTCTCGCGTGACCTTGGGAGGGGGGTCATGGGT
GGGGCGGTGGGGATCGCTGGCGAAGGAAGATTGA
back to top