mRNA_E-siliculosus-1a_F_contig123.1440.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig123.1440.1
Unique NamemRNA_E-siliculosus-1a_F_contig123.1440.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig123.1440.1 vs. uniprot
Match: D8LHN9_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHN9_ECTSI)

HSP 1 Score: 483 bits (1242), Expect = 8.150e-168
Identity = 306/347 (88.18%), Postives = 311/347 (89.63%), Query Frame = 1 
Query:   10 MDGGGIMACGRRTARMKGLVRVTVLLSTAIYAGAQETCTSVTVTGGDFPGDYELGEGDVYVGTDDSTHVLQPVVFAESRARRNLVGGAGDXXXXXXXXXXRRGLANDCASQMWILADTGAVEEEGFPYYSTFDCATHPASVESTWLYVDCDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLTLPVIIAIAAGVLIVLLCLGFCVVHRKKRAHKGSHTFADDSQHSLAQQKRAGKAGAGGAAVAGXXXXXXXXXXXNGAVPLPAYTGAVGESVESPMAAGGAMGDGGDRGVGXXGRSNVRGGGXXSGRSGAGLLAKGSNAKSFKPNHGGANTPAYEGMFAPRGGG 1050
            MDGGGIMACGRRTARMKGL RV VLLSTAIYA AQETCTSVTVTGGDFPGDYELGEGDVYVGTDDST VLQPVVFAESRARR+LVG    XXXXXXXXXX RGLANDCASQMWILADTGAVEE GFPYYSTFDCATHPASVESTWLYVDCDD  XXXXXXXXXXXXXXXXXX          GLTLPVIIAI AG LI+LLCLGFCVVHRKKRAHKGSHTFADDSQHSLAQQKRAGKAGAGGAAVA XXXXXXXXXXXNGAVPLPAYTGAVGE+VESPMAAGG MG+ GDRGVG  GR NVRG  XX   SGAGLLAKGSNAKSFKPNHGGANTP YEG+FAPRGGG
Sbjct:    1 MDGGGIMACGRRTARMKGLARVAVLLSTAIYAVAQETCTSVTVTGGDFPGDYELGEGDVYVGTDDSTRVLQPVVFAESRARRSLVGXXXXXXXXXXXXXXXRGLANDCASQMWILADTGAVEEAGFPYYSTFDCATHPASVESTWLYVDCDDCAXXXXXXXXXXXXXXXXXXLLTSGDGGDSGLTLPVIIAIVAGGLILLLCLGFCVVHRKKRAHKGSHTFADDSQHSLAQQKRAGKAGAGGAAVAXXXXXXXXXXXXNGAVPLPAYTGAVGETVESPMAAGGTMGESGDRGVGGDGRGNVRGXXXXXXXSGAGLLAKGSNAKSFKPNHGGANTPGYEGIFAPRGGG 347
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig123.1440.1 vs. uniprot
Match: A0A6H5K704_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K704_9PHAE)

HSP 1 Score: 486 bits (1251), Expect = 5.700e-166
Identity = 307/389 (78.92%), Postives = 315/389 (80.98%), Query Frame = 1 
Query:   28 MACGRRTARMKGLVRVTVLLSTAIYAGAQETCTSVTVTGGDFPGDYELGEG--DVYVGTDDSTHVLQPVVFAESRARRNLVGGAGDXXXXXXXXXXRRGLANDCASQMWILADTGAVEEEGFPYYSTFDCATHPASVESTWLYVDCDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLTLPVIIAIAAGVLIVLLCLGFCVVHRKKRAHKGSHTFADDSQHSLAQQKRAGKAGAGGAAVAGXXXXXXXXXXXNGAVPLPAYTGAVGESVESPMAAGGAMGDGGDRGVGXXGRSNVRGGGXXSGRSGAGLLAKGSNAKSFKPNHGGANTPAYEGMFAPRGGGGXXXXXXXXXXXPGSSQGTATTSTALPHPAAVEMSNYAKPVLRKDS 1188
            MA GRRTA MKGL RV VLLSTAIYA AQETCTSVTVTGGD PG YELGE   +VYVGTDDSTHVLQPVVFAESRARRNLVGG GD XXXXXXXXXRRGLANDCA+QMWILADTGAVEEEGFPYYSTFDCATHPASVESTWLYVDCDD                               LT+P IIAIA G LIV+LC+GFCV H KKRAHKGSHTFADDSQHSLAQQKRAGKAGAGGAAVA XXXXXXXXXXX  AVPLPAYTGA+GE+VESPMAAGG MGD GDRGVG  G  NVRGG   SG S AGLLAKGSNAKSFKPNHGG NTPAYEG+FAPRGG GXXXXXXXX         TATTS ALPHPAAVEMSNYAKPVLRKDS
Sbjct:    1 MARGRRTAGMKGLGRVAVLLSTAIYAAAQETCTSVTVTGGDLPGVYELGESSSEVYVGTDDSTHVLQPVVFAESRARRNLVGGTGDGXXXXXXXXXRRGLANDCATQMWILADTGAVEEEGFPYYSTFDCATHPASVESTWLYVDCDDCAEVATISVVCTSPEVLTSDDGGDGD-----LTIPAIIAIAVGGLIVVLCVGFCVFHCKKRAHKGSHTFADDSQHSLAQQKRAGKAGAGGAAVADXXXXXXXXXXXXXAVPLPAYTGAIGETVESPMAAGGTMGDSGDRGVGGDGPRNVRGGIGVSGGSSAGLLAKGSNAKSFKPNHGGVNTPAYEGIFAPRGGAGXXXXXXXX---------TATTSAALPHPAAVEMSNYAKPVLRKDS 375
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig123.1440.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHN9_ECTSI8.150e-16888.18Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K704_9PHAE5.700e-16678.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig123contigE-siliculosus-1a_F_contig123:2589..10199 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size1179
Model size1190
Exons5
Ec32 orthologEc-26_003820.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categorysignal peptide
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig123.1440.1prot_E-siliculosus-1a_F_contig123.1440.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig123 2598..10199 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927748.3723435-UTR-E-siliculosus-1a_F_contig123:2588..25971622927748.3723435-UTR-E-siliculosus-1a_F_contig123:2588..2597Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig123 2589..2597 +
1696318665.210614-UTR-E-siliculosus-1a_F_contig123:2588..25971696318665.210614-UTR-E-siliculosus-1a_F_contig123:2588..2597Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig123 2589..2597 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927748.3847148-CDS-E-siliculosus-1a_F_contig123:2597..27031622927748.3847148-CDS-E-siliculosus-1a_F_contig123:2597..2703Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig123 2598..2703 +
1696318665.2220476-CDS-E-siliculosus-1a_F_contig123:2597..27031696318665.2220476-CDS-E-siliculosus-1a_F_contig123:2597..2703Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig123 2598..2703 +
1622927748.3971803-CDS-E-siliculosus-1a_F_contig123:4727..48471622927748.3971803-CDS-E-siliculosus-1a_F_contig123:4727..4847Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig123 4728..4847 +
1696318665.2298203-CDS-E-siliculosus-1a_F_contig123:4727..48471696318665.2298203-CDS-E-siliculosus-1a_F_contig123:4727..4847Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig123 4728..4847 +
1622927748.4084342-CDS-E-siliculosus-1a_F_contig123:8088..82471622927748.4084342-CDS-E-siliculosus-1a_F_contig123:8088..8247Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig123 8089..8247 +
1696318665.2399397-CDS-E-siliculosus-1a_F_contig123:8088..82471696318665.2399397-CDS-E-siliculosus-1a_F_contig123:8088..8247Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig123 8089..8247 +
1622927748.422909-CDS-E-siliculosus-1a_F_contig123:8915..89581622927748.422909-CDS-E-siliculosus-1a_F_contig123:8915..8958Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig123 8916..8958 +
1696318665.2477639-CDS-E-siliculosus-1a_F_contig123:8915..89581696318665.2477639-CDS-E-siliculosus-1a_F_contig123:8915..8958Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig123 8916..8958 +
1622927748.4341578-CDS-E-siliculosus-1a_F_contig123:9448..101991622927748.4341578-CDS-E-siliculosus-1a_F_contig123:9448..10199Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig123 9449..10199 +
1696318665.2553792-CDS-E-siliculosus-1a_F_contig123:9448..101991696318665.2553792-CDS-E-siliculosus-1a_F_contig123:9448..10199Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig123 9449..10199 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig123.1440.1

>prot_E-siliculosus-1a_F_contig123.1440.1 ID=prot_E-siliculosus-1a_F_contig123.1440.1|Name=mRNA_E-siliculosus-1a_F_contig123.1440.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=393bp
MDGGGIMACGRRTARMKGLVRVTVLLSTAIYAGAQETCTSVTVTGGDFPG
DYELGEGDVYVGTDDSTHVLQPVVFAESRARRNLVGGAGDGGGGGGGGSR
RRGLANDCASQMWILADTGAVEEEGFPYYSTFDCATHPASVESTWLYVDC
DDCAEVATISVVCTSSTEDAEDVLTSGDGGDGGLTLPVIIAIAAGVLIVL
LCLGFCVVHRKKRAHKGSHTFADDSQHSLAQQKRAGKAGAGGAAVAGGGG
GATAAAGGNGAVPLPAYTGAVGESVESPMAAGGAMGDGGDRGVGGDGRSN
VRGGGGGSGRSGAGLLAKGSNAKSFKPNHGGANTPAYEGMFAPRGGGGGG
GGGGAAGGAPGSSQGTATTSTALPHPAAVEMSNYAKPVLRKDS
back to top

mRNA from alignment at E-siliculosus-1a_F_contig123:2589..10199+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig123.1440.1 ID=mRNA_E-siliculosus-1a_F_contig123.1440.1|Name=mRNA_E-siliculosus-1a_F_contig123.1440.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=7611bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig123:2589..10199+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCCAGCGCCATGGACGGCGGTGGGATCATGGCCTGTGGACGAAGAACTGC
TAGGATGAAAGGCTTGGTGAGGGTGACTGTGCTCCTGTCGACGGCGATCT
ATGCGGGAGCACAAGGTGTGTGTGGGCTTATTGTTGGTGGACATCGGTGA
ACAGAGAGGAAGAGGGAAGGCACAACATCCGGTGCAATTCGTTCGTCGCC
CTTCTGTGCATCATGGAATCACACCCCTTTTCACGCACTGCTGCCTTGTG
CTCTGTCTTTGTTTTGCGGCGGGCTCGTTGTTGCGAGGGCGCGTCGTGTC
CCTTGCGGTCGTTGCCTGGAGCGCACGCACTCGTCCCCAAAGCGGCGCCG
TTTTTGCTGCGACGAAGTGATGAAAGTGTAGCTATTTTTTGATGTCAACC
CCGCGATGTACAGGACACAGCATCACGATCGAACTATTACTGCTGCATGC
GAAGGGCGAACCGAAGTTTAGGGGACGAGGTGGCTCCACAGGCGAGCATC
TCCCACAGCGGTTCTCAGCTCGCCCGCCCTTGTGGCGTGCCATCCATCCA
GCCTCCCGCCCGGCCCCTACAGCAGTGAACGCTTTTTCATCCCTGTCTCT
TCACATTCAAAATATATGCCGCGTCTCTTTCCCTCTATTGTATTGTAAAG
GTATGTACATCTGTAGTTATTGAAAGAGTGAATTCTTCATTTTTCCGTTC
TGTGGCCGACAACAACTCTCGAACAAAGAAGCACCCACACCGCGTACCGC
AACGTGTTTGCGGGTTCCCGTGCGGGGACGGCAAGTGACTACAATGGCGG
TATAGCGGTGGTGGGTTTGTCGGCGTTGTAGATATACGTATTGAACGGCA
GGGGACACGATTTGTTTGTGTGCGATGTACCTAAACGGCAGGGTTCCTGA
CCGCTGTCTGTCCCCGTCCCCCCGGCGCGAACAAATAACTTCCCGACAGA
CCGCGAGCGGGGCGTCCGAACATGTTTTTTTTTTTATACGACTATTTTTT
TATATAGATAATATATGCTCTACCCACACCCACCCACCCACGCCGCTTGG
CACCGAGCCCTTTCCCAAGGTTTGATTTTTTAAGAACAAAACAACGCGTT
GGCGCTGGCTGCTTCTCGCCGAACTACAAGCTCAAGGACACAAACACAGC
AGCAACAGCAGTTTCGTCCCATGTTCGGACGGATTATCTTGCTTCCCTGC
CTACTTCTACAGCTGTCTTGAGTTGACAGGCGCTCGACCTAGCCATTCTC
GCTGTGTGTCCTATGCATAGTCTAGTTTTGGCGCGTTTTGTTCAGTCGGA
ATGTGAACTTCTTTGCGGAGGAAATGCCGAACACCTTGTGGCTTTTAAGT
ACGCACGCACCGGTGGGGCACTCCTCTTGAAGCGGAGAACCACGGAAACG
CGGAAATCGACCCAAATGGTTGAGGGCCGAATACACGGGCAGGTTTTGGT
TGCCTTCTCGTTGCTAGGATTGTATTTTGAGGGAGTTCTGACTGTTGGTT
GTCTGAAAAGAGGGCGCTGTAGCCAAGGACGCCGTGGGTAAAGCGGCAGA
TTTTACACGAGAATGCATGCATACGTTGGTCAGTTGCGACCACCATGTCA
CCGCTGCTTGTTTTTCTGTTCCAGCGGCGGCAATCAAGAGAGAGTGATCG
GAGGCAAAAAGTAAACCACACGTCCATTGTCACGATCGATGCCGTCGACT
AGACTACCACATAAATAGTGTCGACTCTCCATGACCCCTGGCAGGCTGGA
TAGCCCCTTGACAGACAGGCTTTGAGAGGGTTGTGCGTAAACGATATTGC
TGTAGTCGTCACGGCTGTCGCATGCAACAGACAGCAGTTAAGATAGGCTG
GGTTGGTTCTTTTTGCTTGAGGACGAGGTCTGTCCGTAGGCAGTTTGTCA
GTTTGTACTGGCTGCTGGCTACAGTAGCTCTTGCAGCTCTTGTGTGCCTT
TCCTTTTTTTCGCGATTCGAAAAAAAAAAAAAAGAGTTCTTGGTGAACTT
GTTGGTGGTCGTTTCTGTTGTCCGTTGTCCGTGTCTCACTGCTACTGCTG
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCGCCCCCCGCTGTG
CGCTGTATCATGGCGACGACGCTACTGCTGTACGCGCAGAGACGTGCACT
AGCGTTACGGTAACCGGTGGTGACTTCCCCGGCGATTACGAGCTAGGGGA
GGGAGACGTGTACGTTGGGACGGACGATTCAACGCACGTCCTGCAGCCGG
TTGTATTCGGTGAGGTTTCTTCGGCATGTAGGAAAACATTCGAAGTATTA
CGTTGCACAAGCAAAGACTACCCGCCGTTCGAGAGAATGCACCAATCGAA
GGAATGGGTTTGAAGTACTTACGAAAGTATTTATTTTTCACAAGCGTGCG
TTTTCCAGTTTCCAGAGGGCAGTACAATGTACTCGAAGTATCTCGTTACC
CACACGGGAGAATCGTTGTACAGCTGCTCGAGGAATCGTATCTAGACCCT
CATGTAAAATACTCCGCTACCTTCCTTCCTATTATACGTAAATAGTGTAT
CCTTATCTAGGGATGGAGATGGATGTGCTACGTGACACAAGCAACATGAT
CTCTTGTGTATCAACAGCAGATAGAGTCCTGTCTCTCTCTCTGGCTCTCC
TTGGCGGCGACGTCGATAAACCTACCAAACCTACCGCTTGTAGTGGACGG
CCATGGCTGCGCACGGTAATACGTGCTCGTCCTTTTGTGGCCCGCACCTC
CTGCTCTGTGGTCCCCGCTACTGCTGTGCAATCGCTGGCGCGTGTGTGTG
TTCGTCCCATCTATTTTGGCGCCGGTTTACAGTACAGGCCGTTCGGCGTG
AATAGTATACCTGATGTAACAGCCGGGGTCAAACCAGAGGAGGTCACACA
GGATTTTTTCAATTTGTTGTTCGTTACTGCCCCACCTTCTCCCCCGCTAT
GCTTGCCTTGTTTTTTTTCGCGAGAAGGGTTCAACCATCCCTTTACCTCG
TCGATCGTGAAGCTCAGTGTATCAATCAAGTTCGTCCTGAAAACTGCCGA
ATGATGTAGAAAAGGACGTCCAGAATTAATTACGGGCGAGGCACGCACAT
GGAGAGATATGGTTGTTGTAGCCTGGCGGCTTGCCTTTTGGGTCAGCCAG
TCATTAGCGCGGTCGACGCAGATCGAAGAAACGAGCACACGCCGAAAGAG
GCACTTAGACGGCGGTATGGCACCCGTGACGCAAAACGTGCTGAAACACC
GGGTTGTTCGTGTGTGGACTGCTGTTGGTTCGAAAAGTTCGAGTGCCATG
TAGGTTCCGTAAGACCACCACGCTTGACACCTTTTTCGGAAATTATTTAT
TCACGCGGGTGCGATAGCCGGTCGCCCCGGTCTAGCTGGGAATCCGCGCA
ACCCTCTAGCTCCAGGTCATGGCATGATGGGTTCGAGTCCCGGCGTGAGT
GAGCTTTTCTTATAACATGAGTTTTTCTCTCGCTTGCGTTCCTGCCTGAT
TGTGGATAGCGCTAGTTCGTGTGTACACAGGGAAGAGAAGGCCTAACTCT
TCTTCAAAAATCTTAGGCAATAGTACCGCAGGAGAGGAGGGGAGGGAGAG
GGGCTCTCCTGTGCGACCACGGGTTGGAGTAACACCGGCAGAAATGTTGT
GTGCTCTGGTTTGAAGTAATGACAAAAAAAAATAAAAAAATATTGATGTT
GCAGGACGTGTGGGATGGCACTCATGGGGAAGTGCATTCACAGGACGCCG
CATACAGGGCCTGTAATGGAACAACGGGGTGCGATGATGTCACGAGTGTG
GTCAAGTGCGCTGGCACAAGACCTCACGTATTGGGGGTAGTGATACATAA
TCAGGATGGCTCATGATGCCGCCGCTTATTCCAGAATTTCATCAATGACG
TGTGATGCCGCTTTTTCCAGTGCCACGTAAGACCCCTTCAATGCGGAACG
ATTCCTTCTCAGTGTCGAATATTATTACTGCTTTGTCCAACATAGATGAT
CGGGGGTAGATTCGGTGATTGTCAATTGCAATGATGGCTTTGGTTGGGTG
TTCTTTTTCACTGTATGGCCACGGACGCATTCTGACAGCACCTCAGACAA
CAGTTGCGCGCCCCGAACTTGTCCCATGCCTATCATGGTGTTATTGTACA
CGCAGCACTCCAGACAGCTGTATACGCTGTAGTCGACAAACGTTCATTTT
GGTAAAGTGTGGGACAGGGGGGATGATGCTGCTGCTGTAGTCGAATGCAG
AGTGTGGGCATGTAGTTCAGTTTTGGGCGTGCAAACGTGCTGCAGGGATG
TAGGTGTACCTCTTCGGGATTGAGTACCCTTTTCTTGCTAGGTTGCATGT
TCTTTAGATCTTCTGATGACTCTAGCATTTTTGTGACCACGGACCGCGTC
TTTGCTAGATTTTGGGATTAGCAACTGACACGAGTTTAATGTCAAGACAG
CAACAACAACCACAACATGCACGTCTCCCAGAAGTAGGTGCTGAAGTAGA
ATGCGAACACAGAGGCGTGTACGCGTAGCATTGCATGGCGGTTGTGCCCG
TGTTTCGGAGTGCAAGTCAAACAAGACAGCAAGGAGGCACGAAAACTAAA
AAAAAAAAGACCGGGAATCCCAAGGCATGCCAGGCGTACTTTCCACGACT
CTCGCCGGAACTATCCACGGTGTGTGATGGTGTAAGAGGATTGCGCGCAC
GTGTTTGTTTCCTCTGGCCCACGACGAACACTATCTTTGCCTGTGTGCGC
CCAACCTTTAGGCGAGCGCGGACCATAAACCTGTCAAACGTTGTGCCGTG
GTAAATAGCCGTGCGGGAGGAAACAACTCGTTACGGGAGGAAAAAAAATC
GTTTTGCAGTTGTTCGCCGCTTTACTTCGAGCTGCCGTCAATCACTTCGC
GCTTTCTCCAGATGGCCAAGCAGAGCCAAAGCATGTCAAGTACTGCTGTT
TTTTCGGGGTGAAGAATAGGGCCGCGTTTGAGACACGTGCCACGGCGGTT
CTGTAGTTGTGCGCGGTCTGTGTGAGGAACGCGGCGATTCTGATGGACTC
ATGGGTACCGCAGCGGCACGATGAAATATTGAGAAGGGGTGGGAGAAATA
AGGATTGCCCGGCTACGACAAAGGGCTTTCCAGTTTCACGACAACTCCTG
ATGTTTTCTACAAGCTGCGGCACGGCGGACGGAGAACATGCGGTTCCGGG
GCTTTATTCTCCCCCGCTTACCCCGCCTTCAAAACTGAGGGAAACGCCTG
GTGACCTTTTCTTGTCCCGTGTCCTGTGTCCCGTGTCCCGTGTCCCGTGT
ACCCGTGTCCCGTCATTTAACCCCCACGGAACACAGTACCTACCTTCGTG
GAACATAAACTATGCATACAATACGCAACTGCTGCCGTAATCGCAGAACT
GCCAGTCTAAACTCGCTCCATCACCCGCCTCTCTCTCTCGCTCTTTTCTG
TTTTGTGGCTCCGCGTTTTTTTCTCGCGTTGCTCTCTTCGCCTCTCGCAG
CGGAGAGCAGGGCACGAAGGAACCTGGTGGGCGGCGCGGGCGATGGGGGC
GGTGGCGGCGGCGGCGGCAGCAGGAGGAGAGGCCTCGCGAACGATTGCGC
GTCTCAGATGTGGATCCTGGCGGACACCGGGGCGGTCGAGGAGGAAGGAT
TCCCTTACTGTGAGTCGTGCTCACATGGGGACCGCCGCCGTTGTCGGCCT
CGGGTCTGTCTGCTGTCTGTGCATGTCGGCCGGAAGAGTTGCGAGCGGTG
GGCATGAAGCAAGGCCCTATGTGGCACGTTTGTATGTGGTGGTCCTTAGG
AGGCGGAGGGTAGCACCACTGCCCCATGCCGGTCGTGTGGCCATTCTACA
AAGATGGTGCTTGTTTTTGTGAAACGGTACTGCGGGAAACGGTTTGTAGC
CGAGGTGGGAGGAAACCCCGGCATTAAAGTGGACGTTATCCTCCGGGTGG
TCGACCTTCTTGGCTTCGATCGCCATCGAGTATTAATAGCAAGAAGAGAC
CAGACGCGAGTGGCACCTCTCCAATCCGTTGTCGGTTCCCCAATGAACTA
TTGACCTAGCCTACGTCCGAGCGACGCGTGTTGTCGACGCGTGTTGTTGC
TGAAGAAGGAAGGAAGCCGCGCCGGCTTTCTTTTGCCGGACAACAATGGT
CTCCCTGCCCCCCCCCCCCCCCTAGACTGCTTCGCGCGACCGCTCTCTCA
CGCCCTCTATCGCTCTCCTTGTCCCGCACCGCCGCTGCCATGACCTCAAC
AATCGAATCGTCGCACATGGTTCTTTCTGCGTGGGGTGGTTTTGTGGATG
GGCTCTTGATGCGTCGACGGAGAACAGATTCGACCTTCGACTGCGCGACA
CATCCCGCGAGCGTAGAGAGGTGAGCGAGGACATTTTCGAGCTGCTTTGT
GCGACTTGATGACACGTCCCGCCGCTGATTTGTGTTGCAAGTGTCGGTGC
CCACCAGCAGTAGGTCAGTTGTGCTGCTTGTCGATGGCTGTGTTTTCAGG
CCAGTTGTTTGGTCATGCATAGTTCCCCGCGCCGCAATCTGCAGACTTTC
ATGCTCAGACGAAAGTGGTTGCATCGGCATGTTGTGTTTCGACTTGTGAG
GGAGGGCCTGACTTGGCAAATTCACGCCGAAACGGTACCAATCGGAAAAC
ACGCTCACGCCTCGCGCGGGGAGTTATGGCCTATAAGAATTCCGCCGCGT
CTTTTGCGGCGCTCACCTTGCGGGCACGTGTCATGTTTTCGACAACGTCC
CTGAAACGTTTGTGCTTTGTTGCTCTACACCCGCACGACTATTCGCTGGC
GCCATCACACCGACGACACCTACCCCTTCCCCACCGCAAATATCGCCTCC
GTGTATGCAGCACGTGGCTGTACGTTGACTGCGACGATTGTGCCGAGGTA
GCGACTATTTCCGTCGTGTGCACGTCTTCGACGGAGGACGCGGAGGACGT
CCTGACCAGCGGCGACGGCGGCGACGGCGGCCTGACCCTTCCCGTTATCA
TCGCCATCGCCGCGGGAGTACTGATCGTCCTGTTGTGCCTCGGTTTCTGC
GTGGTCCACCGCAAGAAACGGGCCCACAAGGGAAGCCACACCTTTGCGGA
CGACTCGCAGCACAGCCTGGCCCAGCAGAAGAGGGCCGGGAAGGCGGGGG
CCGGCGGCGCAGCGGTCGCGGGCGGTGGAGGCGGCGCTACTGCCGCTGCT
GGTGGCAACGGGGCGGTGCCCCTCCCCGCGTACACCGGGGCGGTCGGCGA
GTCTGTCGAGAGCCCCATGGCGGCGGGGGGCGCCATGGGTGATGGCGGCG
ATCGTGGCGTGGGCGGCGATGGGCGCAGCAACGTGCGGGGCGGGGGTGGC
GGTAGCGGCCGCAGCGGCGCAGGCCTGCTCGCGAAGGGCTCGAACGCCAA
GAGCTTCAAGCCGAACCACGGCGGCGCGAACACTCCGGCGTACGAGGGCA
TGTTCGCACCCCGCGGCGGCGGCGGCGGTGGCGGCGGTGGCGGCGCCGCC
GGAGGCGCCCCCGGCAGCAGCCAGGGCACCGCCACCACCTCGACGGCGTT
GCCGCACCCCGCGGCGGTGGAGATGTCGAACTACGCGAAGCCCGTCTTGC
GCAAGGATTCC
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig123:2589..10199+

>mRNA_E-siliculosus-1a_F_contig123.1440.1 ID=mRNA_E-siliculosus-1a_F_contig123.1440.1|Name=mRNA_E-siliculosus-1a_F_contig123.1440.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2358bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig123:2589..10199+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGACGGCGGTGGGATCATGGCCTGTGGACGAAGAACTGCTAGGATGAA
AGGCTTGGTGAGGGTGACTGTGCTCCTGTCGACGGCGATCTATGCGGGAG
CACAAGATGGACGGCGGTGGGATCATGGCCTGTGGACGAAGAACTGCTAG
GATGAAAGGCTTGGTGAGGGTGACTGTGCTCCTGTCGACGGCGATCTATG
CGGGAGCACAAGAGACGTGCACTAGCGTTACGGTAACCGGTGGTGACTTC
CCCGGCGATTACGAGCTAGGGGAGGGAGACGTGTACGTTGGGACGGACGA
TTCAACGCACGTCCTGCAGCCGGTTGTATTCGAGACGTGCACTAGCGTTA
CGGTAACCGGTGGTGACTTCCCCGGCGATTACGAGCTAGGGGAGGGAGAC
GTGTACGTTGGGACGGACGATTCAACGCACGTCCTGCAGCCGGTTGTATT
CGCGGAGAGCAGGGCACGAAGGAACCTGGTGGGCGGCGCGGGCGATGGGG
GCGGTGGCGGCGGCGGCGGCAGCAGGAGGAGAGGCCTCGCGAACGATTGC
GCGTCTCAGATGTGGATCCTGGCGGACACCGGGGCGGTCGAGGAGGAAGG
ATTCCCTTACTCGGAGAGCAGGGCACGAAGGAACCTGGTGGGCGGCGCGG
GCGATGGGGGCGGTGGCGGCGGCGGCGGCAGCAGGAGGAGAGGCCTCGCG
AACGATTGCGCGTCTCAGATGTGGATCCTGGCGGACACCGGGGCGGTCGA
GGAGGAAGGATTCCCTTACTATTCGACCTTCGACTGCGCGACACATCCCG
CGAGCGTAGAGAGATTCGACCTTCGACTGCGCGACACATCCCGCGAGCGT
AGAGAGCACGTGGCTGTACGTTGACTGCGACGATTGTGCCGAGGTAGCGA
CTATTTCCGTCGTGTGCACGTCTTCGACGGAGGACGCGGAGGACGTCCTG
ACCAGCGGCGACGGCGGCGACGGCGGCCTGACCCTTCCCGTTATCATCGC
CATCGCCGCGGGAGTACTGATCGTCCTGTTGTGCCTCGGTTTCTGCGTGG
TCCACCGCAAGAAACGGGCCCACAAGGGAAGCCACACCTTTGCGGACGAC
TCGCAGCACAGCCTGGCCCAGCAGAAGAGGGCCGGGAAGGCGGGGGCCGG
CGGCGCAGCGGTCGCGGGCGGTGGAGGCGGCGCTACTGCCGCTGCTGGTG
GCAACGGGGCGGTGCCCCTCCCCGCGTACACCGGGGCGGTCGGCGAGTCT
GTCGAGAGCCCCATGGCGGCGGGGGGCGCCATGGGTGATGGCGGCGATCG
TGGCGTGGGCGGCGATGGGCGCAGCAACGTGCGGGGCGGGGGTGGCGGTA
GCGGCCGCAGCGGCGCAGGCCTGCTCGCGAAGGGCTCGAACGCCAAGAGC
TTCAAGCCGAACCACGGCGGCGCGAACACTCCGGCGTACGAGGGCATGTT
CGCACCCCGCGGCGGCGGCGGCGGTGGCGGCGGTGGCGGCGCCGCCGGAG
GCGCCCCCGGCAGCAGCCAGGGCACCGCCACCACCTCGACGGCGTTGCCG
CACCCCGCGGCGGTGGAGATGTCGAACTACGCGAAGCCCGTCTTGCGCAA
GGATTCCCACGTGGCTGTACGTTGACTGCGACGATTGTGCCGAGGTAGCG
ACTATTTCCGTCGTGTGCACGTCTTCGACGGAGGACGCGGAGGACGTCCT
GACCAGCGGCGACGGCGGCGACGGCGGCCTGACCCTTCCCGTTATCATCG
CCATCGCCGCGGGAGTACTGATCGTCCTGTTGTGCCTCGGTTTCTGCGTG
GTCCACCGCAAGAAACGGGCCCACAAGGGAAGCCACACCTTTGCGGACGA
CTCGCAGCACAGCCTGGCCCAGCAGAAGAGGGCCGGGAAGGCGGGGGCCG
GCGGCGCAGCGGTCGCGGGCGGTGGAGGCGGCGCTACTGCCGCTGCTGGT
GGCAACGGGGCGGTGCCCCTCCCCGCGTACACCGGGGCGGTCGGCGAGTC
TGTCGAGAGCCCCATGGCGGCGGGGGGCGCCATGGGTGATGGCGGCGATC
GTGGCGTGGGCGGCGATGGGCGCAGCAACGTGCGGGGCGGGGGTGGCGGT
AGCGGCCGCAGCGGCGCAGGCCTGCTCGCGAAGGGCTCGAACGCCAAGAG
CTTCAAGCCGAACCACGGCGGCGCGAACACTCCGGCGTACGAGGGCATGT
TCGCACCCCGCGGCGGCGGCGGCGGTGGCGGCGGTGGCGGCGCCGCCGGA
GGCGCCCCCGGCAGCAGCCAGGGCACCGCCACCACCTCGACGGCGTTGCC
GCACCCCGCGGCGGTGGAGATGTCGAACTACGCGAAGCCCGTCTTGCGCA
AGGATTCC
back to top