prot_E-siliculosus-1a_F_contig123.1440.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig123.1440.1
Unique Nameprot_E-siliculosus-1a_F_contig123.1440.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length393
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig123.1440.1 vs. uniprot
Match: D8LHN9_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHN9_ECTSI)

HSP 1 Score: 483 bits (1244), Expect = 3.620e-168
Identity = 306/347 (88.18%), Postives = 311/347 (89.63%), Query Frame = 0 
Query:    1 MDGGGIMACGRRTARMKGLVRVTVLLSTAIYAGAQETCTSVTVTGGDFPGDYELGEGDVYVGTDDSTHVLQPVVFAESRARRNLVGGAGDXXXXXXXXXXRRGLANDCASQMWILADTGAVEEEGFPYYSTFDCATHPASVESTWLYVDCDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLTLPVIIAIAAGVLIVLLCLGFCVVHRKKRAHKGSHTFADDSQHSLAQQKRAGKAGAGGAAVAGXXXXXXXXXXXNGAVPLPAYTGAVGESVESPMAAGGAMGDGGDRGVGXXGRSNVRGGGXXSGRSGAGLLAKGSNAKSFKPNHGGANTPAYEGMFAPRGGG 347
            MDGGGIMACGRRTARMKGL RV VLLSTAIYA AQETCTSVTVTGGDFPGDYELGEGDVYVGTDDST VLQPVVFAESRARR+LVG    XXXXXXXXXX RGLANDCASQMWILADTGAVEE GFPYYSTFDCATHPASVESTWLYVDCDD  XXXXXXXXXXXXXXXXXX          GLTLPVIIAI AG LI+LLCLGFCVVHRKKRAHKGSHTFADDSQHSLAQQKRAGKAGAGGAAVA XXXXXXXXXXXNGAVPLPAYTGAVGE+VESPMAAGG MG+ GDRGVG  GR NVRG  XX   SGAGLLAKGSNAKSFKPNHGGANTP YEG+FAPRGGG
Sbjct:    1 MDGGGIMACGRRTARMKGLARVAVLLSTAIYAVAQETCTSVTVTGGDFPGDYELGEGDVYVGTDDSTRVLQPVVFAESRARRSLVGXXXXXXXXXXXXXXXRGLANDCASQMWILADTGAVEEAGFPYYSTFDCATHPASVESTWLYVDCDDCAXXXXXXXXXXXXXXXXXXLLTSGDGGDSGLTLPVIIAIVAGGLILLLCLGFCVVHRKKRAHKGSHTFADDSQHSLAQQKRAGKAGAGGAAVAXXXXXXXXXXXXNGAVPLPAYTGAVGETVESPMAAGGTMGESGDRGVGGDGRGNVRGXXXXXXXSGAGLLAKGSNAKSFKPNHGGANTPGYEGIFAPRGGG 347
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BLAST of mRNA_E-siliculosus-1a_F_contig123.1440.1 vs. uniprot
Match: A0A6H5K704_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K704_9PHAE)

HSP 1 Score: 487 bits (1253), Expect = 2.540e-166
Identity = 307/389 (78.92%), Postives = 315/389 (80.98%), Query Frame = 0 
Query:    7 MACGRRTARMKGLVRVTVLLSTAIYAGAQETCTSVTVTGGDFPGDYELGEG--DVYVGTDDSTHVLQPVVFAESRARRNLVGGAGDXXXXXXXXXXRRGLANDCASQMWILADTGAVEEEGFPYYSTFDCATHPASVESTWLYVDCDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLTLPVIIAIAAGVLIVLLCLGFCVVHRKKRAHKGSHTFADDSQHSLAQQKRAGKAGAGGAAVAGXXXXXXXXXXXNGAVPLPAYTGAVGESVESPMAAGGAMGDGGDRGVGXXGRSNVRGGGXXSGRSGAGLLAKGSNAKSFKPNHGGANTPAYEGMFAPRGGGGXXXXXXXXXXXPGSSQGTATTSTALPHPAAVEMSNYAKPVLRKDS 393
            MA GRRTA MKGL RV VLLSTAIYA AQETCTSVTVTGGD PG YELGE   +VYVGTDDSTHVLQPVVFAESRARRNLVGG GD XXXXXXXXXRRGLANDCA+QMWILADTGAVEEEGFPYYSTFDCATHPASVESTWLYVDCDD                               LT+P IIAIA G LIV+LC+GFCV H KKRAHKGSHTFADDSQHSLAQQKRAGKAGAGGAAVA XXXXXXXXXXX  AVPLPAYTGA+GE+VESPMAAGG MGD GDRGVG  G  NVRGG   SG S AGLLAKGSNAKSFKPNHGG NTPAYEG+FAPRGG GXXXXXXXX         TATTS ALPHPAAVEMSNYAKPVLRKDS
Sbjct:    1 MARGRRTAGMKGLGRVAVLLSTAIYAAAQETCTSVTVTGGDLPGVYELGESSSEVYVGTDDSTHVLQPVVFAESRARRNLVGGTGDGXXXXXXXXXRRGLANDCATQMWILADTGAVEEEGFPYYSTFDCATHPASVESTWLYVDCDDCAEVATISVVCTSPEVLTSDDGGDGD-----LTIPAIIAIAVGGLIVVLCVGFCVFHCKKRAHKGSHTFADDSQHSLAQQKRAGKAGAGGAAVADXXXXXXXXXXXXXAVPLPAYTGAIGETVESPMAAGGTMGDSGDRGVGGDGPRNVRGGIGVSGGSSAGLLAKGSNAKSFKPNHGGVNTPAYEGIFAPRGGAGXXXXXXXX---------TATTSAALPHPAAVEMSNYAKPVLRKDS 375
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig123.1440.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHN9_ECTSI3.620e-16888.18Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K704_9PHAE2.540e-16678.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..183
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 209..393
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 184..208
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..34
score: 0.673
NoneNo IPR availableTMHMMTMhelixcoord: 186..208

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig123contigE-siliculosus-1a_F_contig123:2598..10199 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig123.1440.1mRNA_E-siliculosus-1a_F_contig123.1440.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig123 2589..10199 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig123.1440.1 ID=prot_E-siliculosus-1a_F_contig123.1440.1|Name=mRNA_E-siliculosus-1a_F_contig123.1440.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=393bp
MDGGGIMACGRRTARMKGLVRVTVLLSTAIYAGAQETCTSVTVTGGDFPG
DYELGEGDVYVGTDDSTHVLQPVVFAESRARRNLVGGAGDGGGGGGGGSR
RRGLANDCASQMWILADTGAVEEEGFPYYSTFDCATHPASVESTWLYVDC
DDCAEVATISVVCTSSTEDAEDVLTSGDGGDGGLTLPVIIAIAAGVLIVL
LCLGFCVVHRKKRAHKGSHTFADDSQHSLAQQKRAGKAGAGGAAVAGGGG
GATAAAGGNGAVPLPAYTGAVGESVESPMAAGGAMGDGGDRGVGGDGRSN
VRGGGGGSGRSGAGLLAKGSNAKSFKPNHGGANTPAYEGMFAPRGGGGGG
GGGGAAGGAPGSSQGTATTSTALPHPAAVEMSNYAKPVLRKDS
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