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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10135.144.1 vs. uniprot
Match: D8LD86_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD86_ECTSI) HSP 1 Score: 100 bits (248), Expect = 5.460e-23 Identity = 66/69 (95.65%), Postives = 66/69 (95.65%), Query Frame = 1 Query: 1 MVTGEGFLNFDSEAGVNVSNASPKPSLLGFGXXXXXXXXXXXXXQGSPQPPASMSSSFSVAQQHPQAML 207
MVTGEGFLNFDSEAGVNVS ASPKPSL GFG XXXXXXXXXXXXQGSPQPPASMSSSFSVAQQHPQAML
Sbjct: 487 MVTGEGFLNFDSEAGVNVSTASPKPSLPGFGSXXXXXXXXXXXXQGSPQPPASMSSSFSVAQQHPQAML 555
BLAST of mRNA_E-siliculosus-1a_F_contig10135.144.1 vs. uniprot
Match: D8LD81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD81_ECTSI) HSP 1 Score: 97.1 bits (240), Expect = 6.590e-22 Identity = 52/69 (75.36%), Postives = 52/69 (75.36%), Query Frame = 1 Query: 1 MVTGEGFLNFDSEAGVNVSNASPKPSLLGFGXXXXXXXXXXXXXQGSPQPPASMSSSFSVAQQHPQAML 207
MVTGEGFLNFDSEAGVNVS ASPKPSL GFG QGSPQPP SMSSSFSV QQHPQAML
Sbjct: 485 MVTGEGFLNFDSEAGVNVSTASPKPSLPGFGSSCSSGTGTSQASQGSPQPPVSMSSSFSVGQQHPQAML 553
BLAST of mRNA_E-siliculosus-1a_F_contig10135.144.1 vs. uniprot
Match: A0A6H5KDA8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDA8_9PHAE) HSP 1 Score: 58.2 bits (139), Expect = 1.620e-8 Identity = 29/36 (80.56%), Postives = 33/36 (91.67%), Query Frame = 3 Query: 87 LWLQLQLRYGNKPSVAGITTTARVDVFVVFSRAAAS 194
+W LQLRYG++PSVAGITT ARV+VFVVFSRAAAS
Sbjct: 162 VWHXLQLRYGDEPSVAGITTIARVNVFVVFSRAAAS 197
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 0 |
| Cds size | 207 |
| Model size | 209 |
| Exons | 2 |
| Hectar predicted targeting category | other localisation |
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10135.144.1 >prot_E-siliculosus-1a_F_contig10135.144.1 ID=prot_E-siliculosus-1a_F_contig10135.144.1|Name=mRNA_E-siliculosus-1a_F_contig10135.144.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=69bp
MVTGEGFLNFDSEAGVNVSNASPKPSLLGFGSSSSSGTGTSQASQGSPQP
PASMSSSFSVAQQHPQAML back to topmRNA from alignment at E-siliculosus-1a_F_contig10135:4..491- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig10135.144.1 ID=mRNA_E-siliculosus-1a_F_contig10135.144.1|Name=mRNA_E-siliculosus-1a_F_contig10135.144.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=488bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10135:4..491- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTCACCGGGGAAGGCTTCCTCAACTTTGACTCGGAGGCGGGGGTGAA
CGTTTCGGTGAGATTTGACTGCCCGCCAGGGTGTTGCCGCAAGTACCATG
TTTTTTTCCCTGTTGCATGAATCCCGTGTGCATCGCGGCACAAGAATTTC
GTTCCATGCAGCCCAGCCCACAGGATGGTTTTTCTCCTGTTTCGGGAAAT
AGGGCAGCCCAACTGTCGTTATTGACCATGTTCCGTTTCCGTCGCGGCCC
CATCTCGCTTAATTTCCATGTACGATCGTGGAACACTGGCGGTGCTGATA
CGCCCTCGTCGCTCGCGCGCGGAATTCCATGTTTACAGAACGCCTCCCCC
AAGCCGTCTCTACTGGGCTTTGGCTCCAGCTCCAGCTCCGGTACGGGAAC
AAGCCAAGCGTCGCAGGGATCACCACAACCGCCCGCGTCGATGTCTTCGT
CGTTTTCAGTCGCGCAGCAGCATCCGCAAGCGATGTTG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10135:4..491- >mRNA_E-siliculosus-1a_F_contig10135.144.1 ID=mRNA_E-siliculosus-1a_F_contig10135.144.1|Name=mRNA_E-siliculosus-1a_F_contig10135.144.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=414bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10135:4..491- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTCACCGGGGAAGGCTTCCTCAACTTTGACTCGGAGGCGGGGGTGAA
CGTTTCGATGGTCACCGGGGAAGGCTTCCTCAACTTTGACTCGGAGGCGG
GGGTGAACGTTTCGAACGCCTCCCCCAAGCCGTCTCTACTGGGCTTTGGC
TCCAGCTCCAGCTCCGGTACGGGAACAAGCCAAGCGTCGCAGGGATCACC
ACAACCGCCCGCGTCGATGTCTTCGTCGTTTTCAGTCGCGCAGCAGCATC
CGCAAGCGATGTTGAACGCCTCCCCCAAGCCGTCTCTACTGGGCTTTGGC
TCCAGCTCCAGCTCCGGTACGGGAACAAGCCAAGCGTCGCAGGGATCACC
ACAACCGCCCGCGTCGATGTCTTCGTCGTTTTCAGTCGCGCAGCAGCATC
CGCAAGCGATGTTG back to top
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