mRNA_E-siliculosus-1a_F_contig10135.144.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10135.144.1
Unique NamemRNA_E-siliculosus-1a_F_contig10135.144.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig10135.144.1 vs. uniprot
Match: D8LD86_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD86_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 5.460e-23
Identity = 66/69 (95.65%), Postives = 66/69 (95.65%), Query Frame = 1 
Query:    1 MVTGEGFLNFDSEAGVNVSNASPKPSLLGFGXXXXXXXXXXXXXQGSPQPPASMSSSFSVAQQHPQAML 207
            MVTGEGFLNFDSEAGVNVS ASPKPSL GFG XXXXXXXXXXXXQGSPQPPASMSSSFSVAQQHPQAML
Sbjct:  487 MVTGEGFLNFDSEAGVNVSTASPKPSLPGFGSXXXXXXXXXXXXQGSPQPPASMSSSFSVAQQHPQAML 555
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig10135.144.1 vs. uniprot
Match: D8LD81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD81_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 6.590e-22
Identity = 52/69 (75.36%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:    1 MVTGEGFLNFDSEAGVNVSNASPKPSLLGFGXXXXXXXXXXXXXQGSPQPPASMSSSFSVAQQHPQAML 207
            MVTGEGFLNFDSEAGVNVS ASPKPSL GFG             QGSPQPP SMSSSFSV QQHPQAML
Sbjct:  485 MVTGEGFLNFDSEAGVNVSTASPKPSLPGFGSSCSSGTGTSQASQGSPQPPVSMSSSFSVGQQHPQAML 553
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig10135.144.1 vs. uniprot
Match: A0A6H5KDA8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDA8_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.620e-8
Identity = 29/36 (80.56%), Postives = 33/36 (91.67%), Query Frame = 3 
Query:   87 LWLQLQLRYGNKPSVAGITTTARVDVFVVFSRAAAS 194
            +W  LQLRYG++PSVAGITT ARV+VFVVFSRAAAS
Sbjct:  162 VWHXLQLRYGDEPSVAGITTIARVNVFVVFSRAAAS 197
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10135.144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LD86_ECTSI5.460e-2395.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LD81_ECTSI6.590e-2275.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KDA8_9PHAE1.620e-880.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10135contigE-siliculosus-1a_F_contig10135:4..491 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size207
Model size209
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927515.9788547-CDS-E-siliculosus-1a_F_contig10135:3..1531622927515.9788547-CDS-E-siliculosus-1a_F_contig10135:3..153Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10135 4..153 -
1696318563.311737-CDS-E-siliculosus-1a_F_contig10135:3..1531696318563.311737-CDS-E-siliculosus-1a_F_contig10135:3..153Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10135 4..153 -
1622927515.991631-CDS-E-siliculosus-1a_F_contig10135:434..4911622927515.991631-CDS-E-siliculosus-1a_F_contig10135:434..491Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10135 435..491 -
1696318563.3189788-CDS-E-siliculosus-1a_F_contig10135:434..4911696318563.3189788-CDS-E-siliculosus-1a_F_contig10135:434..491Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10135 435..491 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10135.144.1prot_E-siliculosus-1a_F_contig10135.144.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10135 4..491 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10135.144.1

>prot_E-siliculosus-1a_F_contig10135.144.1 ID=prot_E-siliculosus-1a_F_contig10135.144.1|Name=mRNA_E-siliculosus-1a_F_contig10135.144.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=69bp
MVTGEGFLNFDSEAGVNVSNASPKPSLLGFGSSSSSGTGTSQASQGSPQP
PASMSSSFSVAQQHPQAML
back to top

mRNA from alignment at E-siliculosus-1a_F_contig10135:4..491-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10135.144.1 ID=mRNA_E-siliculosus-1a_F_contig10135.144.1|Name=mRNA_E-siliculosus-1a_F_contig10135.144.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=488bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10135:4..491- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTCACCGGGGAAGGCTTCCTCAACTTTGACTCGGAGGCGGGGGTGAA
CGTTTCGGTGAGATTTGACTGCCCGCCAGGGTGTTGCCGCAAGTACCATG
TTTTTTTCCCTGTTGCATGAATCCCGTGTGCATCGCGGCACAAGAATTTC
GTTCCATGCAGCCCAGCCCACAGGATGGTTTTTCTCCTGTTTCGGGAAAT
AGGGCAGCCCAACTGTCGTTATTGACCATGTTCCGTTTCCGTCGCGGCCC
CATCTCGCTTAATTTCCATGTACGATCGTGGAACACTGGCGGTGCTGATA
CGCCCTCGTCGCTCGCGCGCGGAATTCCATGTTTACAGAACGCCTCCCCC
AAGCCGTCTCTACTGGGCTTTGGCTCCAGCTCCAGCTCCGGTACGGGAAC
AAGCCAAGCGTCGCAGGGATCACCACAACCGCCCGCGTCGATGTCTTCGT
CGTTTTCAGTCGCGCAGCAGCATCCGCAAGCGATGTTG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10135:4..491-

>mRNA_E-siliculosus-1a_F_contig10135.144.1 ID=mRNA_E-siliculosus-1a_F_contig10135.144.1|Name=mRNA_E-siliculosus-1a_F_contig10135.144.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=414bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10135:4..491- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTCACCGGGGAAGGCTTCCTCAACTTTGACTCGGAGGCGGGGGTGAA
CGTTTCGATGGTCACCGGGGAAGGCTTCCTCAACTTTGACTCGGAGGCGG
GGGTGAACGTTTCGAACGCCTCCCCCAAGCCGTCTCTACTGGGCTTTGGC
TCCAGCTCCAGCTCCGGTACGGGAACAAGCCAAGCGTCGCAGGGATCACC
ACAACCGCCCGCGTCGATGTCTTCGTCGTTTTCAGTCGCGCAGCAGCATC
CGCAAGCGATGTTGAACGCCTCCCCCAAGCCGTCTCTACTGGGCTTTGGC
TCCAGCTCCAGCTCCGGTACGGGAACAAGCCAAGCGTCGCAGGGATCACC
ACAACCGCCCGCGTCGATGTCTTCGTCGTTTTCAGTCGCGCAGCAGCATC
CGCAAGCGATGTTG
back to top