Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10134.143.1 vs. uniprot
Match:
E6ZEQ8_ECTSI (Sec-independent transporter protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=E6ZEQ8_ECTSI)
HSP 1 Score: 446 bits (1148), Expect = 2.780e-157
Identity = 222/254 (87.40%), Postives = 241/254 (94.88%), Query Frame = 1
Query: 1 MKRLKLSIYYIQELNYRLAYATLGTTLIFFTTYIYKQGLIFLLLPRGLSHFVSSGLTEIFFTYIQLCIILSLSFGIFLVVSQSYIFLRPGMYTYESNTFLRLLISAFCFYVCIYVLIFPTLIKIIWELFLTYSQNFTPINLTFEPRLNNYLDHVQQLNKILIFSFPCLLTLNLFQKYTNKQLWVKHRGIAYIVAFFIAAFITPPDIISQIFVGAPLIFFFEAQIVTWTFYKKYQQQFLVRQPIKPHKNTLRNKK 762
MKRL+LSIYYIQELNYRLAYA LGTTLIFFTTY YKQGLIFLLLP+GLSHFVS+GLTEIFFTYIQLCIILS+SFGIFL+ SQSY+FLRPGMYTYES+TFL+L+ISAFCFY IY+L+FP LIK+ WELFLTYSQNFTPINLTFEPRLNNYLDH+QQLNKILIFSFPCLLTLNLFQKYTNKQLWVKHRGIAYI+AFFIAAFITPPDIISQI VGAPLIFFFE QI+ W FYK+Y++Q LVRQPIK HKNTLRNK+
Sbjct: 1 MKRLQLSIYYIQELNYRLAYAALGTTLIFFTTYTYKQGLIFLLLPKGLSHFVSAGLTEIFFTYIQLCIILSISFGIFLIASQSYVFLRPGMYTYESSTFLKLIISAFCFYTYIYILVFPALIKVSWELFLTYSQNFTPINLTFEPRLNNYLDHIQQLNKILIFSFPCLLTLNLFQKYTNKQLWVKHRGIAYIIAFFIAAFITPPDIISQILVGAPLIFFFEIQIILWAFYKEYKKQLLVRQPIKSHKNTLRNKE 254
BLAST of mRNA_E-siliculosus-1a_F_contig10134.143.1 vs. uniprot
Match:
A0A8F0JZS6_9PHAE (SecY-independent transporter protein n=1 Tax=Cymathaere triplicata TaxID=309354 RepID=A0A8F0JZS6_9PHAE)
HSP 1 Score: 342 bits (876), Expect = 7.060e-116
Identity = 163/254 (64.17%), Postives = 206/254 (81.10%), Query Frame = 1
Query: 1 MKRLKLSIYYIQELNYRLAYATLGTTLIFFTTYIYKQGLIFLLLPRGLSHFVSSGLTEIFFTYIQLCIILSLSFGIFLVVSQSYIFLRPGMYTYESNTFLRLLISAFCFYVCIYVLIFPTLIKIIWELFLTYSQNFTPINLTFEPRLNNYLDHVQQLNKILIFSFPCLLTLNLFQKYTNKQLWVKHRGIAYIVAFFIAAFITPPDIISQIFVGAPLIFFFEAQIVTWTFYKKYQQQFLVRQPIKPHKNTLRNKK 762
M RLK SIYY+QELNYRLAYA LGT +F TTY YKQGLIF+ LP+GLSHFVS+GLTEIFFTY+QLC I S SFG+ + ++Q Y+FLRPG+Y +E+ T LL +A FY+CIY ++FP ++KI+WELF YSQNFT I+LTFEPRL +YL H+QQLN L SFPCL+ LN+ Q YTN++ W+K+RGIAYI AFFIAAFITPPD++SQ +G PLI F+E QI W+ Y++Y++Q LVRQPIKP++N+ R+KK
Sbjct: 1 MNRLKTSIYYLQELNYRLAYAILGTVFLFSTTYTYKQGLIFIFLPKGLSHFVSTGLTEIFFTYLQLCTIFSFSFGLGIALTQLYLFLRPGLYAFEAKTTFHLLTTALIFYICIYTIVFPIIVKILWELFSAYSQNFTAIDLTFEPRLQDYLSHLQQLNTALTLSFPCLILLNIIQMYTNRETWIKYRGIAYITAFFIAAFITPPDVLSQTLIGLPLIIFYEIQIKFWSLYEEYKKQLLVRQPIKPYENSYRDKK 254
BLAST of mRNA_E-siliculosus-1a_F_contig10134.143.1 vs. uniprot
Match:
W5RG32_COSCS (SecY-independent transporter protein n=19 Tax=Laminariales TaxID=2886 RepID=W5RG32_COSCS)
HSP 1 Score: 339 bits (870), Expect = 6.180e-115
Identity = 163/256 (63.67%), Postives = 208/256 (81.25%), Query Frame = 1
Query: 1 MKRLKLSIYYIQELNYRLAYATLGTTLIFFTTYIYKQGLIFLLLPRGLSHFVSSGLTEIFFTYIQLCIILSLSFGIFLVVSQSYIFLRPGMYTYESNTFLRLLISAFCFYVCIYVLIFPTLIKIIWELFLTYSQNFTPINLTFEPRLNNYLDHVQQLNKILIFSFPCLLTLNLFQKYTNKQLWVKHRGIAYIVAFFIAAFITPPDIISQIFVGAPLIFFFEAQIVTWTFYKKYQQQFLVRQPIKPHKNTLRNKK*S 768
M RL+ SIYY+QEL YRLAYA GT +F T Y YKQGLIF+ LP+GLSHFVS+GLTEIFFTY+Q+C I S SFG+ + ++Q Y+FLRPG+Y +E+NT LLI+AF FY C+Y+ IFP ++K++WELFLTYSQNFT I+LTFEPRL++YL H+QQLNK L FSFPCL+ LN Q YT+KQ WVK+RGIAYI+AF +AAFITPPD++SQ +G PLI +E Q+ W+ Y++Y++Q L+RQPIKPHK + RNK+ S
Sbjct: 1 MNRLQTSIYYLQELKYRLAYAIFGTIFLFSTAYTYKQGLIFIFLPKGLSHFVSTGLTEIFFTYLQICTIFSFSFGLGITLTQLYLFLRPGLYAFEANTIFNLLITAFLFYTCLYIFIFPIIVKMLWELFLTYSQNFTAIDLTFEPRLHDYLTHLQQLNKALTFSFPCLIALNTVQIYTSKQTWVKYRGIAYIIAFSLAAFITPPDVLSQTLLGVPLIVCYEVQLKFWSLYEEYKKQLLIRQPIKPHKYSNRNKEKS 256
BLAST of mRNA_E-siliculosus-1a_F_contig10134.143.1 vs. uniprot
Match:
A0A516ICK0_9PHAE (SecY-independent transporter protein n=3 Tax=Lessonia TaxID=105411 RepID=A0A516ICK0_9PHAE)
HSP 1 Score: 338 bits (866), Expect = 2.340e-114
Identity = 164/254 (64.57%), Postives = 205/254 (80.71%), Query Frame = 1
Query: 1 MKRLKLSIYYIQELNYRLAYATLGTTLIFFTTYIYKQGLIFLLLPRGLSHFVSSGLTEIFFTYIQLCIILSLSFGIFLVVSQSYIFLRPGMYTYESNTFLRLLISAFCFYVCIYVLIFPTLIKIIWELFLTYSQNFTPINLTFEPRLNNYLDHVQQLNKILIFSFPCLLTLNLFQKYTNKQLWVKHRGIAYIVAFFIAAFITPPDIISQIFVGAPLIFFFEAQIVTWTFYKKYQQQFLVRQPIKPHKNTLRNKK 762
M +L++SIYY+QE NYRL Y GT IF TTY YKQ LIF+ LP+GLSHFVS+GLTEIFFTY+Q+C I SLS GI + + Q Y+FLRPG+Y +E+ T LLI+A FYVC+YV+IFP +IKI+WELF TYSQNFT ++LTFEP+L +YL H+QQLNK L FSFPCL+ LN+ Q YTNKQ WVK+RGIAYI AFFIAAFITPPDI+SQ +G PLI ++E Q+ W+ Y++Y++Q L+RQPIK HKN+ R+KK
Sbjct: 1 MNKLQISIYYLQEFNYRLIYTIFGTMFIFITTYTYKQSLIFIFLPQGLSHFVSTGLTEIFFTYLQVCTIFSLSCGIGIAIIQLYLFLRPGLYAFEAKTIFHLLITALIFYVCLYVIIFPIIIKILWELFSTYSQNFTALDLTFEPKLQDYLYHLQQLNKALSFSFPCLIVLNMLQFYTNKQTWVKYRGIAYITAFFIAAFITPPDILSQTLLGLPLILYYELQLKFWSLYEEYKKQLLIRQPIKSHKNSYRDKK 254
BLAST of mRNA_E-siliculosus-1a_F_contig10134.143.1 vs. uniprot
Match:
A0A0U1XGV1_9PHAE (SecY-independent protein translocase component tatC n=1 Tax=Colpomenia peregrina TaxID=27965 RepID=A0A0U1XGV1_9PHAE)
HSP 1 Score: 336 bits (861), Expect = 1.020e-113
Identity = 164/244 (67.21%), Postives = 201/244 (82.38%), Query Frame = 1
Query: 1 MKRLKLSIYYIQELNYRLAYATLGTTLIFFTTYIYKQGLIFLLLPRGLSHFVSSGLTEIFFTYIQLCIILSLSFGIFLVVSQSYIFLRPGMYTYESNTFLRLLISAFCFYVCIYVLIFPTLIKIIWELFLTYSQNFTPINLTFEPRLNNYLDHVQQLNKILIFSFPCLLTLNLFQKYTNKQLWVKHRGIAYIVAFFIAAFITPPDIISQIFVGAPLIFFFEAQIVTWTFYKKYQQQFLVRQPIK 732
MK++++ IYY+QELNYRLAY+ +GT L+F TTYIYKQ LIFL+LP+GLSHF+S+GLTEIFFTY+QLC I+S SFGI L V Q Y+FLRPG++ YES L LLI FY +Y+++FP L+K +WELF TYS NFTPI+LTFEPRLN+YL+H+Q LNKIL FSFPCL+TLNL QKYT K LWVK+RGIAYI+ F IAA +TPPDI+SQ V PLIFFFE QI+ W Y++YQ+Q L+RQPIK
Sbjct: 1 MKKIRIFIYYLQELNYRLAYSVIGTLLLFSTTYIYKQSLIFLILPQGLSHFISAGLTEIFFTYMQLCTIISFSFGIILTVLQIYLFLRPGLFFYESKITLNLLIGIILFYTYLYLILFPLLVKFLWELFTTYSNNFTPIHLTFEPRLNDYLEHIQHLNKILSFSFPCLITLNLIQKYTKKILWVKYRGIAYIIVFSIAACLTPPDILSQTIVALPLIFFFELQIIFWALYQEYQKQLLIRQPIK 244
BLAST of mRNA_E-siliculosus-1a_F_contig10134.143.1 vs. uniprot
Match:
S4S3T7_LAMHY (SecY-independent transporter protein n=8 Tax=Laminariaceae TaxID=33636 RepID=S4S3T7_LAMHY)
HSP 1 Score: 334 bits (856), Expect = 7.760e-113
Identity = 159/254 (62.60%), Postives = 203/254 (79.92%), Query Frame = 1
Query: 1 MKRLKLSIYYIQELNYRLAYATLGTTLIFFTTYIYKQGLIFLLLPRGLSHFVSSGLTEIFFTYIQLCIILSLSFGIFLVVSQSYIFLRPGMYTYESNTFLRLLISAFCFYVCIYVLIFPTLIKIIWELFLTYSQNFTPINLTFEPRLNNYLDHVQQLNKILIFSFPCLLTLNLFQKYTNKQLWVKHRGIAYIVAFFIAAFITPPDIISQIFVGAPLIFFFEAQIVTWTFYKKYQQQFLVRQPIKPHKNTLRNKK 762
M RL+ SIYY+QEL YRLAYA GT +F TTY YKQGLIF+ LP+GLSHFVS+GLTEIFFTY+Q+C I S SFG+ + ++Q Y+FLRPG+Y +E+NT LLI+AF FY C+Y+ +FP ++K++WELF YSQNFT I+LTFEPRL +YL H+QQLNK L SFPC++TLN+ Q YT KQ WVK+RGIAYI AF IAAFITPPD++SQ +G PLI F+E Q+ W Y++Y++Q L+RQPIK H+N+ +KK
Sbjct: 1 MNRLQTSIYYLQELKYRLAYAIFGTIFLFSTTYTYKQGLIFIFLPKGLSHFVSTGLTEIFFTYLQICTIFSFSFGLGITLTQLYLFLRPGLYAFEANTIFNLLITAFLFYTCLYIFVFPIIVKVLWELFSAYSQNFTAIDLTFEPRLKDYLYHLQQLNKTLTLSFPCIITLNIIQIYTKKQTWVKYRGIAYIAAFSIAAFITPPDVLSQTLIGLPLIVFYEIQLKLWFLYEEYKKQLLIRQPIKSHENSYGDKK 254
BLAST of mRNA_E-siliculosus-1a_F_contig10134.143.1 vs. uniprot
Match:
A0A089N2X8_PETFA (SecY-independent protein translocase component tatC n=1 Tax=Petalonia fascia TaxID=2893 RepID=A0A089N2X8_PETFA)
HSP 1 Score: 333 bits (853), Expect = 2.220e-112
Identity = 159/254 (62.60%), Postives = 205/254 (80.71%), Query Frame = 1
Query: 1 MKRLKLSIYYIQELNYRLAYATLGTTLIFFTTYIYKQGLIFLLLPRGLSHFVSSGLTEIFFTYIQLCIILSLSFGIFLVVSQSYIFLRPGMYTYESNTFLRLLISAFCFYVCIYVLIFPTLIKIIWELFLTYSQNFTPINLTFEPRLNNYLDHVQQLNKILIFSFPCLLTLNLFQKYTNKQLWVKHRGIAYIVAFFIAAFITPPDIISQIFVGAPLIFFFEAQIVTWTFYKKYQQQFLVRQPIKPHKNTLRNKK 762
MK+L LSI+Y+QEL YRL YA GT L+FF TY YKQ LI+++LP+GLSHF+++GLTEIFFTY+QLC I+S+SFG+ + Q Y+FLRPG+Y++ES L +LI FY +Y IFP LIK +WELFLTYSQNF PI+LTFEPRLN+YL+HVQ LN++L S P ++TLNL Q+YT K+LWVK+RGIAYI AF +AAFITPPDI+SQ+F+G P+I F+E QI+ W YK+YQ+Q L+ QP+K +KN LRNK+
Sbjct: 1 MKKLHLSIFYLQELKYRLLYAAAGTILLFFITYQYKQALIYIILPQGLSHFITAGLTEIFFTYMQLCSIISISFGLITAILQIYLFLRPGLYSFESKIVLNILICTLLFYTYLYTTIFPLLIKFLWELFLTYSQNFAPIHLTFEPRLNDYLEHVQHLNEVLCLSLPSIITLNLLQRYTKKKLWVKYRGIAYIAAFSLAAFITPPDILSQVFIGFPIILFYELQIIFWALYKQYQEQLLIWQPVKTYKNPLRNKE 254
BLAST of mRNA_E-siliculosus-1a_F_contig10134.143.1 vs. uniprot
Match:
A0A8F0FDV4_9PHAE (SecY-independent transporter protein n=2 Tax=Ecklonia TaxID=105406 RepID=A0A8F0FDV4_9PHAE)
HSP 1 Score: 332 bits (851), Expect = 4.460e-112
Identity = 163/254 (64.17%), Postives = 203/254 (79.92%), Query Frame = 1
Query: 1 MKRLKLSIYYIQELNYRLAYATLGTTLIFFTTYIYKQGLIFLLLPRGLSHFVSSGLTEIFFTYIQLCIILSLSFGIFLVVSQSYIFLRPGMYTYESNTFLRLLISAFCFYVCIYVLIFPTLIKIIWELFLTYSQNFTPINLTFEPRLNNYLDHVQQLNKILIFSFPCLLTLNLFQKYTNKQLWVKHRGIAYIVAFFIAAFITPPDIISQIFVGAPLIFFFEAQIVTWTFYKKYQQQFLVRQPIKPHKNTLRNKK 762
M RL++SIYY+QELNYRLAYA LGT +F TTY YKQ LIF++LP+GLSHFVS+G+TEIFFTYIQL I S SF I + ++Q Y+FLRPG YT+E+ LLI+A FY+C+Y++IFP ++KI+WELF TYSQNFT I+LTFEP+L NYL H+QQLNK L SFPCL+ LN+ Q YTNKQ WVK+RGIAYI AF IAAFITPPDI+SQ +G PLI F+E Q+ W+ Y++Y++Q L+RQPIK H+ R KK
Sbjct: 1 MNRLQISIYYLQELNYRLAYAILGTLFLFITTYTYKQSLIFIILPKGLSHFVSTGITEIFFTYIQLSTIFSFSFSICITLTQLYLFLRPGFYTFEAKITFNLLITALIFYICLYIVIFPIIVKILWELFSTYSQNFTAIDLTFEPKLENYLSHLQQLNKALTLSFPCLVILNILQIYTNKQTWVKYRGIAYITAFSIAAFITPPDILSQTLIGFPLIIFYELQLKFWSLYEEYKKQLLIRQPIKSHEYPNRYKK 254
BLAST of mRNA_E-siliculosus-1a_F_contig10134.143.1 vs. uniprot
Match:
A0A8F0K0V4_9PHAE (SecY-independent transporter protein n=2 Tax=Agaraceae TaxID=2012474 RepID=A0A8F0K0V4_9PHAE)
HSP 1 Score: 330 bits (847), Expect = 1.810e-111
Identity = 159/254 (62.60%), Postives = 203/254 (79.92%), Query Frame = 1
Query: 1 MKRLKLSIYYIQELNYRLAYATLGTTLIFFTTYIYKQGLIFLLLPRGLSHFVSSGLTEIFFTYIQLCIILSLSFGIFLVVSQSYIFLRPGMYTYESNTFLRLLISAFCFYVCIYVLIFPTLIKIIWELFLTYSQNFTPINLTFEPRLNNYLDHVQQLNKILIFSFPCLLTLNLFQKYTNKQLWVKHRGIAYIVAFFIAAFITPPDIISQIFVGAPLIFFFEAQIVTWTFYKKYQQQFLVRQPIKPHKNTLRNKK 762
M RL++SIYY+QELNYRL YA LGT +FFTTY YKQGLIF+ LP+GLSHFVS+GLTEIFFTY+QLC I S SFG+ + ++Q Y+FLRPG+YT+E+ LLI+ FY C+Y+ IFP ++K++WELF YSQNFT I+LTFEPRL++YL H++QLNK L SFPCL+ L + Q YT++Q WVK+RGIAYIVAF IAAFITPPD++SQ +G PLI F+E Q+ W Y+ Y++Q L+RQPI+ HK + RNKK
Sbjct: 1 MNRLQISIYYLQELNYRLTYAILGTLFLFFTTYTYKQGLIFIFLPKGLSHFVSTGLTEIFFTYLQLCTIFSFSFGLGITLTQLYLFLRPGLYTFEARITFNLLITTIIFYSCLYIFIFPIIVKVLWELFSAYSQNFTAIDLTFEPRLHDYLSHLRQLNKALTLSFPCLIALQIVQIYTSRQTWVKYRGIAYIVAFSIAAFITPPDVLSQTLIGLPLIIFYEIQLKFWALYEGYKKQLLIRQPIESHKYSDRNKK 254
BLAST of mRNA_E-siliculosus-1a_F_contig10134.143.1 vs. uniprot
Match:
A0A8F0K1B9_9PHAE (SecY-independent transporter protein n=7 Tax=Alariaceae TaxID=2887 RepID=A0A8F0K1B9_9PHAE)
HSP 1 Score: 330 bits (845), Expect = 3.650e-111
Identity = 160/254 (62.99%), Postives = 201/254 (79.13%), Query Frame = 1
Query: 1 MKRLKLSIYYIQELNYRLAYATLGTTLIFFTTYIYKQGLIFLLLPRGLSHFVSSGLTEIFFTYIQLCIILSLSFGIFLVVSQSYIFLRPGMYTYESNTFLRLLISAFCFYVCIYVLIFPTLIKIIWELFLTYSQNFTPINLTFEPRLNNYLDHVQQLNKILIFSFPCLLTLNLFQKYTNKQLWVKHRGIAYIVAFFIAAFITPPDIISQIFVGAPLIFFFEAQIVTWTFYKKYQQQFLVRQPIKPHKNTLRNKK 762
M LK+SIYY+QELNYRLAYA GT +F TTY YKQGLIF+ LP+GLSHFVS+GLTEIFFTY+Q C I S + ++Q Y+FLRPG+Y +ES T L LLI+A FY+C+YV +FP + KI+WELF YSQNFT I+LTFEPRL++YL H+QQLNK+L SFPCL+ LN+ Q YTN+ +WVK+RGIAYI AFFIAAFITPPD++SQ +G PLI F+E Q+ W+ Y+ Y++Q L+RQPIK HK + R+KK
Sbjct: 1 MNSLKISIYYLQELNYRLAYAIFGTFFLFSTTYTYKQGLIFIFLPKGLSHFVSTGLTEIFFTYLQFCTIFSFXXXXXIALTQLYLFLRPGLYAFESKTILNLLIAAIVFYICLYVFLFPIITKILWELFSDYSQNFTAIDLTFEPRLHDYLLHLQQLNKVLTLSFPCLIALNIVQIYTNRHIWVKYRGIAYITAFFIAAFITPPDVLSQTLIGLPLIIFYEIQLKIWSLYEGYKKQLLLRQPIKSHKYSYRDKK 254
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10134.143.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90 )
Total hits: 25
0 1 Expect = 2.78e-157 / Id = 87.40 Expect = 7.06e-116 / Id = 64.17 Expect = 6.18e-115 / Id = 63.67 Expect = 2.34e-114 / Id = 64.57 Expect = 1.02e-113 / Id = 67.21 Expect = 7.76e-113 / Id = 62.60 Expect = 2.22e-112 / Id = 62.60 Expect = 4.46e-112 / Id = 64.17 Expect = 1.81e-111 / Id = 62.60 Expect = 3.65e-111 / Id = 62.99 Sequence E6ZEQ8_ECTSI A0A8F0JZS6_9PHAE W5RG32_COSCS A0A516ICK0_9PHAE A0A0U1XGV1_9PHAE S4S3T7_LAMHY A0A089N2X8_PETFA A0A8F0FDV4_9PHAE A0A8F0K0V4_9PHAE A0A8F0K1B9_9PHAE Pages
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Start 1 Stop 1 Cds size 765 Model size 818 Exons 1 Hectar predicted targeting category signal anchor BRITE ko00000,ko00001,ko00002,ko02044 Best eggNOG OG NA|NA|NA Best tax level Rickettsiales COG Functional cat. U EggNOG OGs 1MVAY@1224,2TTIX@28211,47FAE@766,COG0805@1,COG0805@2 EggNOG free text desc. Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides GOs GO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009977,GO:0015031,GO:0015291,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0022804,GO:0022857,GO:0022884,GO:0032991,GO:0033036,GO:0033281,GO:0034613,GO:0042886,GO:0042887,GO:0043953,GO:0044425,GO:0044459,GO:0044464,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0065002,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0098796,GO:0098797,GO:1904680 KEGG Module M00336 KEGG Pathway ko03060,ko03070,map03060,map03070 KEGG TC 2.A.64 KEGG ko ko:K03118 Preferred name tatC Seed eggNOG ortholog 1528098.NOVO_01510 Seed ortholog evalue 3.9e-14 Seed ortholog score 85.5 Taxonomic scope Bacteria
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927515.9291303-CDS-E-siliculosus-1a_F_contig10134:1859..2624 1622927515.9291303-CDS-E-siliculosus-1a_F_contig10134:1859..2624 Ectocarpus siliculosus Ec863f_EcPH12_90f female CDS E-siliculosus-1a_F_contig10134 1860..2624 + 1696318563.293649-CDS-E-siliculosus-1a_F_contig10134:1859..2624 1696318563.293649-CDS-E-siliculosus-1a_F_contig10134:1859..2624 Ectocarpus siliculosus Ec863f_EcPH12_90f female CDS E-siliculosus-1a_F_contig10134 1860..2624 +
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927515.9439998-UTR-E-siliculosus-1a_F_contig10134:2624..2677 1622927515.9439998-UTR-E-siliculosus-1a_F_contig10134:2624..2677 Ectocarpus siliculosus Ec863f_EcPH12_90f female UTR E-siliculosus-1a_F_contig10134 2625..2677 + 1696318563.3037312-UTR-E-siliculosus-1a_F_contig10134:2624..2677 1696318563.3037312-UTR-E-siliculosus-1a_F_contig10134:2624..2677 Ectocarpus siliculosus Ec863f_EcPH12_90f female UTR E-siliculosus-1a_F_contig10134 2625..2677 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10134.143.1
>prot_E-siliculosus-1a_F_contig10134.143.1 ID=prot_E-siliculosus-1a_F_contig10134.143.1|Name=mRNA_E-siliculosus-1a_F_contig10134.143.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=255bp
MKRLKLSIYYIQELNYRLAYATLGTTLIFFTTYIYKQGLIFLLLPRGLSH back to top mRNA from alignment at E-siliculosus-1a_F_contig10134:1860..2677+
Legend: CDS polypeptide UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10134.143.1 ID=mRNA_E-siliculosus-1a_F_contig10134.143.1|Name=mRNA_E-siliculosus-1a_F_contig10134.143.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=818bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10134:1860..2677+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)ATGAAAAGACTTAAATTATCCATATATTATATCCAAGAACTTAATTACCG
TTTAGCTTATGCAACTTTAGGCACAACATTAATTTTTTTTACAACATACA
TATATAAACAAGGCTTAATTTTTTTATTATTGCCCCGAGGTTTATCTCAT
TTTGTAAGCTCAGGGCTTACTGAAATCTTTTTTACTTATATACAACTTTG
TATTATTTTAAGCCTAAGCTTTGGTATTTTTTTAGTTGTCTCGCAGAGTT
ATATTTTTTTACGTCCTGGTATGTACACATATGAATCAAACACTTTTTTA
AGACTTCTTATAAGTGCTTTTTGCTTTTACGTATGTATATATGTATTAAT
TTTCCCTACGCTTATTAAAATAATATGGGAACTTTTTTTAACCTACTCAC
AAAATTTCACCCCAATAAATTTAACATTTGAACCTAGATTAAACAATTAT
TTAGACCATGTACAACAATTAAATAAGATATTAATTTTTAGTTTTCCTTG
TTTACTTACCCTAAACTTGTTTCAAAAATATACTAATAAACAATTGTGGG
TAAAACATAGAGGTATAGCTTATATAGTAGCTTTTTTTATTGCTGCTTTT
ATAACCCCTCCTGATATAATAAGCCAAATATTTGTAGGGGCTCCTCTAAT
TTTTTTTTTTGAAGCTCAAATAGTAACGTGGACCTTTTATAAAAAATATC
AGCAACAATTTTTAGTTAGGCAACCAATCAAACCCCATAAGAATACCCTG
AGAAATAAAAAATAA AGCTAAAGCTAACGGCAAAAAACACTTCCAACCTA
ATTTCATTAATTGATCAT back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10134:1860..2677+
>mRNA_E-siliculosus-1a_F_contig10134.143.1 ID=mRNA_E-siliculosus-1a_F_contig10134.143.1|Name=mRNA_E-siliculosus-1a_F_contig10134.143.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1530bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10134:1860..2677+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female) back to top