mRNA_E-siliculosus-1a_F_contig10128.137.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10128.137.1
Unique NamemRNA_E-siliculosus-1a_F_contig10128.137.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10128.137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10128contigE-siliculosus-1a_F_contig10128:1475..1795 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size321
Model size321
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927515.454139-CDS-E-siliculosus-1a_F_contig10128:1474..17951622927515.454139-CDS-E-siliculosus-1a_F_contig10128:1474..1795Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10128 1475..1795 +
1696318563.0605142-CDS-E-siliculosus-1a_F_contig10128:1474..17951696318563.0605142-CDS-E-siliculosus-1a_F_contig10128:1474..1795Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10128 1475..1795 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10128.137.1prot_E-siliculosus-1a_F_contig10128.137.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10128 1475..1795 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10128.137.1

>prot_E-siliculosus-1a_F_contig10128.137.1 ID=prot_E-siliculosus-1a_F_contig10128.137.1|Name=mRNA_E-siliculosus-1a_F_contig10128.137.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=107bp
SINTAPNQADVDLFQSSFNQASNGATSLDGNGISGFLSEKLNQYTSSFGE
LSLMNNKNLLAAAANPTPMNILEANRTLSEFSLKGQLMAKTISQGVRALD
KLTTLQ*
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mRNA from alignment at E-siliculosus-1a_F_contig10128:1475..1795+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10128.137.1 ID=mRNA_E-siliculosus-1a_F_contig10128.137.1|Name=mRNA_E-siliculosus-1a_F_contig10128.137.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=321bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10128:1475..1795+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TCTATCAATACCGCTCCAAATCAAGCAGATGTCGATTTATTCCAATCGAG
TTTCAATCAAGCCAGCAACGGAGCGACGTCATTGGATGGAAACGGTATAT
CTGGTTTTCTATCTGAAAAGCTCAACCAGTATACCTCTTCATTTGGGGAA
CTATCTCTAATGAATAACAAGAATTTGCTTGCTGCAGCAGCTAACCCCAC
GCCAATGAATATCCTAGAAGCCAACAGAACACTATCTGAATTCTCTTTAA
AAGGGCAACTCATGGCAAAAACCATTAGCCAAGGCGTTAGAGCCCTTGAC
AAGCTTACCACCTTGCAATAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10128:1475..1795+

>mRNA_E-siliculosus-1a_F_contig10128.137.1 ID=mRNA_E-siliculosus-1a_F_contig10128.137.1|Name=mRNA_E-siliculosus-1a_F_contig10128.137.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=642bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10128:1475..1795+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TCTATCAATACCGCTCCAAATCAAGCAGATGTCGATTTATTCCAATCGAG
TTTCAATCAAGCCAGCAACGGAGCGACGTCATTGGATGGAAACGGTATAT
CTGGTTTTCTATCTGAAAAGCTCAACCAGTATACCTCTTCATTTGGGGAA
CTATCTCTAATGAATAACAAGAATTTGCTTGCTGCAGCAGCTAACCCCAC
GCCAATGAATATCCTAGAAGCCAACAGAACACTATCTGAATTCTCTTTAA
AAGGGCAACTCATGGCAAAAACCATTAGCCAAGGCGTTAGAGCCCTTGAC
AAGCTTACCACCTTGCAATAGTCTATCAATACCGCTCCAAATCAAGCAGA
TGTCGATTTATTCCAATCGAGTTTCAATCAAGCCAGCAACGGAGCGACGT
CATTGGATGGAAACGGTATATCTGGTTTTCTATCTGAAAAGCTCAACCAG
TATACCTCTTCATTTGGGGAACTATCTCTAATGAATAACAAGAATTTGCT
TGCTGCAGCAGCTAACCCCACGCCAATGAATATCCTAGAAGCCAACAGAA
CACTATCTGAATTCTCTTTAAAAGGGCAACTCATGGCAAAAACCATTAGC
CAAGGCGTTAGAGCCCTTGACAAGCTTACCACCTTGCAATAG
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