Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10125.135.1 vs. uniprot
Match: D8LMR8_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMR8_ECTSI) HSP 1 Score: 144 bits (362), Expect = 2.060e-41 Identity = 72/80 (90.00%), Postives = 74/80 (92.50%), Query Frame = 2 Query: 2 YTVIGTFEMAAILQTYSEKTTDPWEILLQDPTGAKQFYKKSETEQERLKLSEVKHARLAMLAIIGELTQMMMFHKPSFDF 241
+T IGTFEMAAILQTYSE TTDPWEILL+DP GA FYKKSE EQERLKLSEVKHARLAMLAIIGELTQMMMFHKPSFDF
Sbjct: 133 FTFIGTFEMAAILQTYSEDTTDPWEILLKDPMGADLFYKKSEKEQERLKLSEVKHARLAMLAIIGELTQMMMFHKPSFDF 212
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 0 |
| Stop | 0 |
| Cds size | 288 |
| Model size | 288 |
| Exons | 3 |
| Ec32 ortholog | Ec-02_003400.1 |
| Ec32 ortholog description | Light harvesting complex protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10125.135.1 >prot_E-siliculosus-1a_F_contig10125.135.1 ID=prot_E-siliculosus-1a_F_contig10125.135.1|Name=mRNA_E-siliculosus-1a_F_contig10125.135.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=96bp
LYSHRYVRDGCHPPDVLRENHRPLGDPLAGPDGREAILQEERNGAGEAQA
FRGQARAPGDARDHRRADADDDVPQALLRLLSGAVRGGAPPSHVMK back to topmRNA from alignment at E-siliculosus-1a_F_contig10125:654..2486+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig10125.135.1 ID=mRNA_E-siliculosus-1a_F_contig10125.135.1|Name=mRNA_E-siliculosus-1a_F_contig10125.135.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1833bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10125:654..2486+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CTATACAGTCATCGGTACGTTCGAGATGGCTGCCATCCTCCAGACGTACT
CCGAGAAAACCACCGACCCCTGGGAGATCCTCTTGCAGGACCCGACGGTG
AGTTGGGTGTCCGGCTATTACATTATTTTTTTTTTTTTTAGGTGGACGCG
TAGACTATTATTACGTTACTATAGTCAAGTCAAGTCAGAATTTTTTTTTT
GTTGGTTGTGTTGCGGCACTTCTTTGTTTCGCTCCCTGTCGCCTACCCCC
ACGGCCTCGCCTCGAAAAGTAAACAGCGGTGATCCACGTTAGTCAAGCCA
CATGGAACGATTCCGGGTCAGAACCCGGGATCAGAGCGAGCGCTTCTGGC
GAGAGCTCCTGCCGCGCGCAGAATTAACATGCCAACCAGAATGACGTCCA
GGCATGGAGAGATTTCATTCGTGCGTAGCTCGTGAATTTGTACAAATAGC
AGATTCGAACATTTTCCGGCCATAGTAGAATATTTTCCAGAATGTTTTTT
TCGCCCAATTTTGCGTTTCTTTTTTTCTGAGTTACAGATTGTCTCAAGAG
TTGACTTGACGTAGCTGAGGCTTGCCTGCGACACCGAGCATGTTTTCTCT
TCAACTTCGCTGTGACCGTAGTGGAGGTCTTTGATCTTTTTTTAACGGCA
AATGCAAAGAAAGACAAGGCATTTGGATCTAATTGACGGGCATGATTTTC
CGTGTTTTTTTCCTGTCGCATGATGTTAACGCACATTTCGTACGAAGGGC
CCCGACTGCCGTGGTTGTTCGACGTCCGCCTCGAAGAGGCTGTCGTTTGT
CAAGAACGGCTGTTTTTTTTTTTTGTGTGCTGCTGACTCGACGCACCATC
TCTTGGCTGTGCACACACACACACACACACACACACACACCCTTCCGCGC
GCGCTTGATTCGCAGGGCGCGAAGCAATTCTACAAGAAGAGCGAAACGGA
GCAGGAGAGGCTCAAGCTTTCCGAGGTCAAGCACGCGCGCCTGGCGATGC
TCGCGATCATCGGCGAGCTGACGCAGATGATGATGTTCCACAAGGTGAAA
GAACATCCGCATGAAACCCAGCCCAGCCCCGTTCCAGGTTGACGAATGGT
ATTGGTTCCGCGGAGTTTCATTGTACCCATGTGTATACGTTACCTCCTCG
CCACACTCTACGTTTGCCAGAGTGGGCTCAGCTTTCACTCAATCCTTTAC
TTGTTGCGGGTCGGCTTGCTATTTTTGGACTTGTGCACGGAGGACAAAAG
CATTTGCCGGGAATAAAGGGCGGAGATGTTTTGATGGCCGTTGTTTCGAT
GGTTCAGTCACAGCTTTCGCAGGGAGGGGGGGGAGTTCACCAAATATCGG
TCGGGGGGGGAAGGGGGGGGAAAGGGGTTATTGTTAAACCCTTGACGGCG
CCGGTCGCTTCTCCCTTCGCCGGAGGCTGTGCTGCATTTTACGGCAGAAC
GTGTTGCTGCGATGCATCATACACGAAGATCCCCAATTCTGATCGCTGCG
CATCCTTTTCCGCTCATATTTTCCCGTTTGATCGAACCTCAAACCGCCGT
CGCTGATGGTGCTTGTATTCGATTAGTCTTTTTGCCTCCACGCGGAAGGC
CAGACACCTCAAGAAGTTACACGGGGCGCGCGTGCCGCCCCCTCCACCTG
ACAAGCCGCACTTGTGCTCGGCGGTGTTAAAAAAAAAAAATTGTCTCATC
CGAGCCCCTCCTGCAACCGCCCCCCGCTCTTCCGTTCCTCTCGGTGCTTG
CTTGCTTGGTGCGTGATGAAGCCCTCCTTCGACTTCTAAGCGGCGCCGTC
CGTGGCGGGGCACCCCCATCACATGTTATGAAA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10125:654..2486+ >mRNA_E-siliculosus-1a_F_contig10125.135.1 ID=mRNA_E-siliculosus-1a_F_contig10125.135.1|Name=mRNA_E-siliculosus-1a_F_contig10125.135.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=576bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10125:654..2486+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CTATACAGTCATCGGTACGTTCGAGATGGCTGCCATCCTCCAGACGTACT
CCGAGAAAACCACCGACCCCTGGGAGATCCTCTTGCAGGACCCGACGCTA
TACAGTCATCGGTACGTTCGAGATGGCTGCCATCCTCCAGACGTACTCCG
AGAAAACCACCGACCCCTGGGAGATCCTCTTGCAGGACCCGACGGGCGCG
AAGCAATTCTACAAGAAGAGCGAAACGGAGCAGGAGAGGCTCAAGCTTTC
CGAGGTCAAGCACGCGCGCCTGGCGATGCTCGCGATCATCGGCGAGCTGA
CGCAGATGATGATGTTCCACAAGGGCGCGAAGCAATTCTACAAGAAGAGC
GAAACGGAGCAGGAGAGGCTCAAGCTTTCCGAGGTCAAGCACGCGCGCCT
GGCGATGCTCGCGATCATCGGCGAGCTGACGCAGATGATGATGTTCCACA
AGCCCTCCTTCGACTTCTAAGCGGCGCCGTCCGTGGCGGGGCACCCCCAT
CACATGTTATGAAACCCTCCTTCGACTTCTAAGCGGCGCCGTCCGTGGCG
GGGCACCCCCATCACATGTTATGAAA back to top
|