mRNA_E-siliculosus-1a_F_contig10125.135.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10125.135.1
Unique NamemRNA_E-siliculosus-1a_F_contig10125.135.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig10125.135.1 vs. uniprot
Match: D8LMR8_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMR8_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 2.060e-41
Identity = 72/80 (90.00%), Postives = 74/80 (92.50%), Query Frame = 2 
Query:    2 YTVIGTFEMAAILQTYSEKTTDPWEILLQDPTGAKQFYKKSETEQERLKLSEVKHARLAMLAIIGELTQMMMFHKPSFDF 241
            +T IGTFEMAAILQTYSE TTDPWEILL+DP GA  FYKKSE EQERLKLSEVKHARLAMLAIIGELTQMMMFHKPSFDF
Sbjct:  133 FTFIGTFEMAAILQTYSEDTTDPWEILLKDPMGADLFYKKSEKEQERLKLSEVKHARLAMLAIIGELTQMMMFHKPSFDF 212
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10125.135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMR8_ECTSI2.060e-4190.00Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10125contigE-siliculosus-1a_F_contig10125:654..2486 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size288
Model size288
Exons3
Ec32 orthologEc-02_003400.1
Ec32 ortholog descriptionLight harvesting complex protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10125.135.1prot_E-siliculosus-1a_F_contig10125.135.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10125 654..2486 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927515.3542473-CDS-E-siliculosus-1a_F_contig10125:653..7501622927515.3542473-CDS-E-siliculosus-1a_F_contig10125:653..750Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10125 654..750 +
1696318562.999595-CDS-E-siliculosus-1a_F_contig10125:653..7501696318562.999595-CDS-E-siliculosus-1a_F_contig10125:653..750Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10125 654..750 +
1622927515.3661284-CDS-E-siliculosus-1a_F_contig10125:1568..16971622927515.3661284-CDS-E-siliculosus-1a_F_contig10125:1568..1697Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10125 1569..1697 +
1696318563.0097282-CDS-E-siliculosus-1a_F_contig10125:1568..16971696318563.0097282-CDS-E-siliculosus-1a_F_contig10125:1568..1697Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10125 1569..1697 +
1622927515.3794742-CDS-E-siliculosus-1a_F_contig10125:2424..24861622927515.3794742-CDS-E-siliculosus-1a_F_contig10125:2424..2486Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10125 2425..2486 +
1696318563.0270307-CDS-E-siliculosus-1a_F_contig10125:2424..24861696318563.0270307-CDS-E-siliculosus-1a_F_contig10125:2424..2486Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10125 2425..2486 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10125.135.1

>prot_E-siliculosus-1a_F_contig10125.135.1 ID=prot_E-siliculosus-1a_F_contig10125.135.1|Name=mRNA_E-siliculosus-1a_F_contig10125.135.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=96bp
LYSHRYVRDGCHPPDVLRENHRPLGDPLAGPDGREAILQEERNGAGEAQA
FRGQARAPGDARDHRRADADDDVPQALLRLLSGAVRGGAPPSHVMK
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mRNA from alignment at E-siliculosus-1a_F_contig10125:654..2486+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10125.135.1 ID=mRNA_E-siliculosus-1a_F_contig10125.135.1|Name=mRNA_E-siliculosus-1a_F_contig10125.135.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1833bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10125:654..2486+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CTATACAGTCATCGGTACGTTCGAGATGGCTGCCATCCTCCAGACGTACT
CCGAGAAAACCACCGACCCCTGGGAGATCCTCTTGCAGGACCCGACGGTG
AGTTGGGTGTCCGGCTATTACATTATTTTTTTTTTTTTTAGGTGGACGCG
TAGACTATTATTACGTTACTATAGTCAAGTCAAGTCAGAATTTTTTTTTT
GTTGGTTGTGTTGCGGCACTTCTTTGTTTCGCTCCCTGTCGCCTACCCCC
ACGGCCTCGCCTCGAAAAGTAAACAGCGGTGATCCACGTTAGTCAAGCCA
CATGGAACGATTCCGGGTCAGAACCCGGGATCAGAGCGAGCGCTTCTGGC
GAGAGCTCCTGCCGCGCGCAGAATTAACATGCCAACCAGAATGACGTCCA
GGCATGGAGAGATTTCATTCGTGCGTAGCTCGTGAATTTGTACAAATAGC
AGATTCGAACATTTTCCGGCCATAGTAGAATATTTTCCAGAATGTTTTTT
TCGCCCAATTTTGCGTTTCTTTTTTTCTGAGTTACAGATTGTCTCAAGAG
TTGACTTGACGTAGCTGAGGCTTGCCTGCGACACCGAGCATGTTTTCTCT
TCAACTTCGCTGTGACCGTAGTGGAGGTCTTTGATCTTTTTTTAACGGCA
AATGCAAAGAAAGACAAGGCATTTGGATCTAATTGACGGGCATGATTTTC
CGTGTTTTTTTCCTGTCGCATGATGTTAACGCACATTTCGTACGAAGGGC
CCCGACTGCCGTGGTTGTTCGACGTCCGCCTCGAAGAGGCTGTCGTTTGT
CAAGAACGGCTGTTTTTTTTTTTTGTGTGCTGCTGACTCGACGCACCATC
TCTTGGCTGTGCACACACACACACACACACACACACACACCCTTCCGCGC
GCGCTTGATTCGCAGGGCGCGAAGCAATTCTACAAGAAGAGCGAAACGGA
GCAGGAGAGGCTCAAGCTTTCCGAGGTCAAGCACGCGCGCCTGGCGATGC
TCGCGATCATCGGCGAGCTGACGCAGATGATGATGTTCCACAAGGTGAAA
GAACATCCGCATGAAACCCAGCCCAGCCCCGTTCCAGGTTGACGAATGGT
ATTGGTTCCGCGGAGTTTCATTGTACCCATGTGTATACGTTACCTCCTCG
CCACACTCTACGTTTGCCAGAGTGGGCTCAGCTTTCACTCAATCCTTTAC
TTGTTGCGGGTCGGCTTGCTATTTTTGGACTTGTGCACGGAGGACAAAAG
CATTTGCCGGGAATAAAGGGCGGAGATGTTTTGATGGCCGTTGTTTCGAT
GGTTCAGTCACAGCTTTCGCAGGGAGGGGGGGGAGTTCACCAAATATCGG
TCGGGGGGGGAAGGGGGGGGAAAGGGGTTATTGTTAAACCCTTGACGGCG
CCGGTCGCTTCTCCCTTCGCCGGAGGCTGTGCTGCATTTTACGGCAGAAC
GTGTTGCTGCGATGCATCATACACGAAGATCCCCAATTCTGATCGCTGCG
CATCCTTTTCCGCTCATATTTTCCCGTTTGATCGAACCTCAAACCGCCGT
CGCTGATGGTGCTTGTATTCGATTAGTCTTTTTGCCTCCACGCGGAAGGC
CAGACACCTCAAGAAGTTACACGGGGCGCGCGTGCCGCCCCCTCCACCTG
ACAAGCCGCACTTGTGCTCGGCGGTGTTAAAAAAAAAAAATTGTCTCATC
CGAGCCCCTCCTGCAACCGCCCCCCGCTCTTCCGTTCCTCTCGGTGCTTG
CTTGCTTGGTGCGTGATGAAGCCCTCCTTCGACTTCTAAGCGGCGCCGTC
CGTGGCGGGGCACCCCCATCACATGTTATGAAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10125:654..2486+

>mRNA_E-siliculosus-1a_F_contig10125.135.1 ID=mRNA_E-siliculosus-1a_F_contig10125.135.1|Name=mRNA_E-siliculosus-1a_F_contig10125.135.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=576bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10125:654..2486+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CTATACAGTCATCGGTACGTTCGAGATGGCTGCCATCCTCCAGACGTACT
CCGAGAAAACCACCGACCCCTGGGAGATCCTCTTGCAGGACCCGACGCTA
TACAGTCATCGGTACGTTCGAGATGGCTGCCATCCTCCAGACGTACTCCG
AGAAAACCACCGACCCCTGGGAGATCCTCTTGCAGGACCCGACGGGCGCG
AAGCAATTCTACAAGAAGAGCGAAACGGAGCAGGAGAGGCTCAAGCTTTC
CGAGGTCAAGCACGCGCGCCTGGCGATGCTCGCGATCATCGGCGAGCTGA
CGCAGATGATGATGTTCCACAAGGGCGCGAAGCAATTCTACAAGAAGAGC
GAAACGGAGCAGGAGAGGCTCAAGCTTTCCGAGGTCAAGCACGCGCGCCT
GGCGATGCTCGCGATCATCGGCGAGCTGACGCAGATGATGATGTTCCACA
AGCCCTCCTTCGACTTCTAAGCGGCGCCGTCCGTGGCGGGGCACCCCCAT
CACATGTTATGAAACCCTCCTTCGACTTCTAAGCGGCGCCGTCCGTGGCG
GGGCACCCCCATCACATGTTATGAAA
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