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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1011.126.1 vs. uniprot
Match: D7FNM2_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNM2_ECTSI) HSP 1 Score: 85.1 bits (209), Expect = 3.300e-17 Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 3 Query: 249 MMLGNMSSSVLSQLDRLKESFLWAAAKGGRVEECESLLEMGT 374
MMLGNMSSSVLSQLDRLKESFLWAAAKGGRVEECESLLEMGT
Sbjct: 1 MMLGNMSSSVLSQLDRLKESFLWAAAKGGRVEECESLLEMGT 42
BLAST of mRNA_E-siliculosus-1a_F_contig1011.126.1 vs. uniprot
Match: A0A7S1U254_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U254_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 4.490e-8 Identity = 26/31 (83.87%), Postives = 28/31 (90.32%), Query Frame = 3 Query: 282 SQLDRLKESFLWAAAKGGRVEECESLLEMGT 374
S L+RLKESFLWAAA+GGR EECESLLEMG
Sbjct: 9 SHLERLKESFLWAAARGGREEECESLLEMGA 39
BLAST of mRNA_E-siliculosus-1a_F_contig1011.126.1 vs. uniprot
Match: A0A836CF95_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF95_9STRA) HSP 1 Score: 56.2 bits (134), Expect = 1.770e-7 Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 3 Query: 276 VLSQLDRLKESFLWAAAKGGRVEECESLLEMGT 374
VLSQL RLKESFL AAAKGGRV+EC SLLE+G
Sbjct: 9 VLSQLHRLKESFLLAAAKGGRVDECRSLLELGA 41
BLAST of mRNA_E-siliculosus-1a_F_contig1011.126.1 vs. uniprot
Match: A0A8J2SNL1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SNL1_9STRA) HSP 1 Score: 53.1 bits (126), Expect = 1.340e-5 Identity = 24/30 (80.00%), Postives = 26/30 (86.67%), Query Frame = 3 Query: 285 QLDRLKESFLWAAAKGGRVEECESLLEMGT 374
QLDR+KESFLWAAAKGGR EE ESLL +G
Sbjct: 6 QLDRMKESFLWAAAKGGREEEVESLLSIGA 35
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 195 |
| Model size | 383 |
| Exons | 2 |
| Hectar predicted targeting category | other localisation |
| BRITE | ko00000,ko01009,ko03400 |
| Best eggNOG OG | NA|NA|NA |
| Best tax level | Eukaryota |
| COG Functional cat. | L |
| EggNOG OGs | COG0666@1,KOG0508@2759 |
| EggNOG free text desc. | EP4 subtype prostaglandin E2 receptor binding |
| KEGG ko | ko:K15502 |
| Seed eggNOG ortholog | 2880.D7FNM2 |
| Seed ortholog evalue | 2.2e-14 |
| Seed ortholog score | 84.3 |
| Taxonomic scope | Eukaryota |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927514.4154131-UTR-E-siliculosus-1a_F_contig1011:23427..23615 | 1622927514.4154131-UTR-E-siliculosus-1a_F_contig1011:23427..23615 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1011 23428..23615 + |
| 1696318562.319792-UTR-E-siliculosus-1a_F_contig1011:23427..23615 | 1696318562.319792-UTR-E-siliculosus-1a_F_contig1011:23427..23615 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1011 23428..23615 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927514.4276974-CDS-E-siliculosus-1a_F_contig1011:23615..23722 | 1622927514.4276974-CDS-E-siliculosus-1a_F_contig1011:23615..23722 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1011 23616..23722 + |
| 1696318562.331899-CDS-E-siliculosus-1a_F_contig1011:23615..23722 | 1696318562.331899-CDS-E-siliculosus-1a_F_contig1011:23615..23722 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1011 23616..23722 + |
| 1622927514.4380648-CDS-E-siliculosus-1a_F_contig1011:24245..24333 | 1622927514.4380648-CDS-E-siliculosus-1a_F_contig1011:24245..24333 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1011 24246..24333 + |
| 1696318562.3413646-CDS-E-siliculosus-1a_F_contig1011:24245..24333 | 1696318562.3413646-CDS-E-siliculosus-1a_F_contig1011:24245..24333 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1011 24246..24333 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1011.126.1 >prot_E-siliculosus-1a_F_contig1011.126.1 ID=prot_E-siliculosus-1a_F_contig1011.126.1|Name=mRNA_E-siliculosus-1a_F_contig1011.126.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=65bp
MIARSTASPSLIDITKLSSAMMLGNMSSSVLSQLDRLKESFLWAAAKGGR
VEECESLLEMGTGK* back to topmRNA from alignment at E-siliculosus-1a_F_contig1011:23428..24333+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1011.126.1 ID=mRNA_E-siliculosus-1a_F_contig1011.126.1|Name=mRNA_E-siliculosus-1a_F_contig1011.126.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=906bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1011:23428..24333+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCAACAGAAGGAAGGCGGGCAAACCCTCTAAACATCTACACACTCGA
AGTCTGTAGTTCTTTACAGCAGTACGCCACGACTACCTGACTCTTTTGTT
CTGTTTTTCCTTATTTTCGTCGAAAACGACGGTTTCAAGCGAACCGACAT
CCCGCGGTGGAGATTTCGTAGATCCGCCGCCGATTTATATGATCGCCCGT
TCCACTGCCTCACCCTCCCTCATCGATATCACTAAACTTTCATCCGCCAT
GATGCTGGGAAACATGAGCTCTAGTGTCCTTTCGCAGCTGGATCGGTGAG
TAAAAGCACGGGTTGGTTGACGACAAGCACGGGATGAATCCTCGGCAGAA
CACACAACAGCAGTCAGCGGCAGGCCACGCATGGCATGCATGTAGAATGC
TGGGGTAGCTACATACGCTAGGTCTAGACTACTGTAGTGAGCTTTCTTTG
TCTTGGATATATGCTGACAGCTCAAGACCTTCCCCTCATCATGATAAATC
CCCCCACACAAGAGTAGTAGTCGCTGCTGCATGGAGATTAGACTATACAT
TACCCGCTCACACTGCTGTGTTAATCGATTCTTGTCTCTGTTGCTGGCAA
AGTGCCTCTCGCTCCTTGCTCTGTTGCACGTAGAACACGCCCCACGGGCA
TGGCCATGCCCCACGGGCATGGTGAGTTGTGGTTCTCTCATGTTAGAGCA
CTTGCAATAATTTCGTCATGCGATGCGTTGACGTGCAAAGAGTTTACGTG
CAAAGAACAAGACATCACCTACTGTAACAACGTCGACGCCGACTGTTCCA
TGCTCCCCTTCCGACAAGCTTGAAGGAAAGTTTCCTCTGGGCCGCGGCGA
AAGGTGGGCGTGTAGAGGAGTGCGAGTCTCTTTTGGAGATGGGGACAGGC
AAGTGA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1011:23428..24333+ >mRNA_E-siliculosus-1a_F_contig1011.126.1 ID=mRNA_E-siliculosus-1a_F_contig1011.126.1|Name=mRNA_E-siliculosus-1a_F_contig1011.126.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=390bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1011:23428..24333+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGATCGCCCGTTCCACTGCCTCACCCTCCCTCATCGATATCACTAAACT
TTCATCCGCCATGATGCTGGGAAACATGAGCTCTAGTGTCCTTTCGCAGC
TGGATCGATGATCGCCCGTTCCACTGCCTCACCCTCCCTCATCGATATCA
CTAAACTTTCATCCGCCATGATGCTGGGAAACATGAGCTCTAGTGTCCTT
TCGCAGCTGGATCGCTTGAAGGAAAGTTTCCTCTGGGCCGCGGCGAAAGG
TGGGCGTGTAGAGGAGTGCGAGTCTCTTTTGGAGATGGGGACAGGCAAGT
GACTTGAAGGAAAGTTTCCTCTGGGCCGCGGCGAAAGGTGGGCGTGTAGA
GGAGTGCGAGTCTCTTTTGGAGATGGGGACAGGCAAGTGA back to top
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