mRNA_E-siliculosus-1a_F_contig1011.126.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1011.126.1
Unique NamemRNA_E-siliculosus-1a_F_contig1011.126.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1011.126.1 vs. uniprot
Match: D7FNM2_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNM2_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 3.300e-17
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 3 
Query:  249 MMLGNMSSSVLSQLDRLKESFLWAAAKGGRVEECESLLEMGT 374
            MMLGNMSSSVLSQLDRLKESFLWAAAKGGRVEECESLLEMGT
Sbjct:    1 MMLGNMSSSVLSQLDRLKESFLWAAAKGGRVEECESLLEMGT 42
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BLAST of mRNA_E-siliculosus-1a_F_contig1011.126.1 vs. uniprot
Match: A0A7S1U254_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U254_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 4.490e-8
Identity = 26/31 (83.87%), Postives = 28/31 (90.32%), Query Frame = 3 
Query:  282 SQLDRLKESFLWAAAKGGRVEECESLLEMGT 374
            S L+RLKESFLWAAA+GGR EECESLLEMG 
Sbjct:    9 SHLERLKESFLWAAARGGREEECESLLEMGA 39
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BLAST of mRNA_E-siliculosus-1a_F_contig1011.126.1 vs. uniprot
Match: A0A836CF95_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF95_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.770e-7
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 3 
Query:  276 VLSQLDRLKESFLWAAAKGGRVEECESLLEMGT 374
            VLSQL RLKESFL AAAKGGRV+EC SLLE+G 
Sbjct:    9 VLSQLHRLKESFLLAAAKGGRVDECRSLLELGA 41
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BLAST of mRNA_E-siliculosus-1a_F_contig1011.126.1 vs. uniprot
Match: A0A8J2SNL1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SNL1_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.340e-5
Identity = 24/30 (80.00%), Postives = 26/30 (86.67%), Query Frame = 3 
Query:  285 QLDRLKESFLWAAAKGGRVEECESLLEMGT 374
            QLDR+KESFLWAAAKGGR EE ESLL +G 
Sbjct:    6 QLDRMKESFLWAAAKGGREEEVESLLSIGA 35
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1011.126.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FNM2_ECTSI3.300e-17100.00Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A7S1U254_9STRA4.490e-883.87Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A836CF95_9STRA1.770e-781.82Ankyrin repeat-containing domain protein n=1 Tax=T... [more]
A0A8J2SNL1_9STRA1.340e-580.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1011contigE-siliculosus-1a_F_contig1011:23428..24333 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size195
Model size383
Exons2
Hectar predicted targeting categoryother localisation
BRITEko00000,ko01009,ko03400
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.L
EggNOG OGsCOG0666@1,KOG0508@2759
EggNOG free text desc.EP4 subtype prostaglandin E2 receptor binding
KEGG koko:K15502
Seed eggNOG ortholog2880.D7FNM2
Seed ortholog evalue2.2e-14
Seed ortholog score84.3
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1011.126.1prot_E-siliculosus-1a_F_contig1011.126.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1011 23616..24333 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927514.4154131-UTR-E-siliculosus-1a_F_contig1011:23427..236151622927514.4154131-UTR-E-siliculosus-1a_F_contig1011:23427..23615Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1011 23428..23615 +
1696318562.319792-UTR-E-siliculosus-1a_F_contig1011:23427..236151696318562.319792-UTR-E-siliculosus-1a_F_contig1011:23427..23615Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1011 23428..23615 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927514.4276974-CDS-E-siliculosus-1a_F_contig1011:23615..237221622927514.4276974-CDS-E-siliculosus-1a_F_contig1011:23615..23722Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1011 23616..23722 +
1696318562.331899-CDS-E-siliculosus-1a_F_contig1011:23615..237221696318562.331899-CDS-E-siliculosus-1a_F_contig1011:23615..23722Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1011 23616..23722 +
1622927514.4380648-CDS-E-siliculosus-1a_F_contig1011:24245..243331622927514.4380648-CDS-E-siliculosus-1a_F_contig1011:24245..24333Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1011 24246..24333 +
1696318562.3413646-CDS-E-siliculosus-1a_F_contig1011:24245..243331696318562.3413646-CDS-E-siliculosus-1a_F_contig1011:24245..24333Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1011 24246..24333 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1011.126.1

>prot_E-siliculosus-1a_F_contig1011.126.1 ID=prot_E-siliculosus-1a_F_contig1011.126.1|Name=mRNA_E-siliculosus-1a_F_contig1011.126.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=65bp
MIARSTASPSLIDITKLSSAMMLGNMSSSVLSQLDRLKESFLWAAAKGGR
VEECESLLEMGTGK*
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mRNA from alignment at E-siliculosus-1a_F_contig1011:23428..24333+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1011.126.1 ID=mRNA_E-siliculosus-1a_F_contig1011.126.1|Name=mRNA_E-siliculosus-1a_F_contig1011.126.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=906bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1011:23428..24333+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCAACAGAAGGAAGGCGGGCAAACCCTCTAAACATCTACACACTCGA
AGTCTGTAGTTCTTTACAGCAGTACGCCACGACTACCTGACTCTTTTGTT
CTGTTTTTCCTTATTTTCGTCGAAAACGACGGTTTCAAGCGAACCGACAT
CCCGCGGTGGAGATTTCGTAGATCCGCCGCCGATTTATATGATCGCCCGT
TCCACTGCCTCACCCTCCCTCATCGATATCACTAAACTTTCATCCGCCAT
GATGCTGGGAAACATGAGCTCTAGTGTCCTTTCGCAGCTGGATCGGTGAG
TAAAAGCACGGGTTGGTTGACGACAAGCACGGGATGAATCCTCGGCAGAA
CACACAACAGCAGTCAGCGGCAGGCCACGCATGGCATGCATGTAGAATGC
TGGGGTAGCTACATACGCTAGGTCTAGACTACTGTAGTGAGCTTTCTTTG
TCTTGGATATATGCTGACAGCTCAAGACCTTCCCCTCATCATGATAAATC
CCCCCACACAAGAGTAGTAGTCGCTGCTGCATGGAGATTAGACTATACAT
TACCCGCTCACACTGCTGTGTTAATCGATTCTTGTCTCTGTTGCTGGCAA
AGTGCCTCTCGCTCCTTGCTCTGTTGCACGTAGAACACGCCCCACGGGCA
TGGCCATGCCCCACGGGCATGGTGAGTTGTGGTTCTCTCATGTTAGAGCA
CTTGCAATAATTTCGTCATGCGATGCGTTGACGTGCAAAGAGTTTACGTG
CAAAGAACAAGACATCACCTACTGTAACAACGTCGACGCCGACTGTTCCA
TGCTCCCCTTCCGACAAGCTTGAAGGAAAGTTTCCTCTGGGCCGCGGCGA
AAGGTGGGCGTGTAGAGGAGTGCGAGTCTCTTTTGGAGATGGGGACAGGC
AAGTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1011:23428..24333+

>mRNA_E-siliculosus-1a_F_contig1011.126.1 ID=mRNA_E-siliculosus-1a_F_contig1011.126.1|Name=mRNA_E-siliculosus-1a_F_contig1011.126.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=390bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1011:23428..24333+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGATCGCCCGTTCCACTGCCTCACCCTCCCTCATCGATATCACTAAACT
TTCATCCGCCATGATGCTGGGAAACATGAGCTCTAGTGTCCTTTCGCAGC
TGGATCGATGATCGCCCGTTCCACTGCCTCACCCTCCCTCATCGATATCA
CTAAACTTTCATCCGCCATGATGCTGGGAAACATGAGCTCTAGTGTCCTT
TCGCAGCTGGATCGCTTGAAGGAAAGTTTCCTCTGGGCCGCGGCGAAAGG
TGGGCGTGTAGAGGAGTGCGAGTCTCTTTTGGAGATGGGGACAGGCAAGT
GACTTGAAGGAAAGTTTCCTCTGGGCCGCGGCGAAAGGTGGGCGTGTAGA
GGAGTGCGAGTCTCTTTTGGAGATGGGGACAGGCAAGTGA
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