mRNA_E-siliculosus-1a_F_contig118.1163.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig118.1163.1
Unique NamemRNA_E-siliculosus-1a_F_contig118.1163.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig118.1163.1 vs. uniprot
Match: A0A6H5L2K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2K9_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 4.620e-21
Identity = 43/56 (76.79%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:   91 GLEWLACACHKSERTVQKFVGTPGLKKSVSAFSKVATHLHKSALSKVVVQDAQQVS 258
            G+EWL  ACHK+ERTVQ FVG PGLKKS+SAF+KVATHL KSAL K V QDAQQ+S
Sbjct:   34 GMEWLGRACHKAERTVQNFVGPPGLKKSISAFTKVATHLQKSALWKGVFQDAQQLS 89
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BLAST of mRNA_E-siliculosus-1a_F_contig118.1163.1 vs. uniprot
Match: D7G6P8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6P8_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 3.180e-14
Identity = 32/53 (60.38%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:   94 LEWLACACHKSERTVQKFVGTPGLKKSVSAFSKVATHLHKSALSKVVVQDAQQ 252
            ++WL C CHK+E TVQKFV TPGLK+++  F+KVA HLHKSALS     +AQ+
Sbjct:   34 IQWLGCGCHKTELTVQKFVNTPGLKETLKRFTKVAGHLHKSALSLGAFFEAQK 86
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig118.1163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L2K9_9PHAE4.620e-2176.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6P8_ECTSI3.180e-1460.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig118contigE-siliculosus-1a_F_contig118:76375..76635 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size261
Model size263
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927700.0585556-CDS-E-siliculosus-1a_F_contig118:76374..766351622927700.0585556-CDS-E-siliculosus-1a_F_contig118:76374..76635Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig118 76375..76635 -
1696318643.88968-CDS-E-siliculosus-1a_F_contig118:76374..766351696318643.88968-CDS-E-siliculosus-1a_F_contig118:76374..76635Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig118 76375..76635 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig118.1163.1prot_E-siliculosus-1a_F_contig118.1163.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig118 76375..76635 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig118.1163.1

>prot_E-siliculosus-1a_F_contig118.1163.1 ID=prot_E-siliculosus-1a_F_contig118.1163.1|Name=mRNA_E-siliculosus-1a_F_contig118.1163.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=87bp
VERAWNCQDRDLHDDGHGCEHEERGRRAHAGLEWLACACHKSERTVQKFV
GTPGLKKSVSAFSKVATHLHKSALSKVVVQDAQQVS*
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mRNA from alignment at E-siliculosus-1a_F_contig118:76375..76635-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig118.1163.1 ID=mRNA_E-siliculosus-1a_F_contig118.1163.1|Name=mRNA_E-siliculosus-1a_F_contig118.1163.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=261bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig118:76375..76635- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTTGAAAGAGCTTGGAATTGCCAAGACCGTGACCTGCATGACGACGGACA
CGGCTGCGAACATGAAGAACGGGGTCGTCGAGCACATGCCGGGTTAGAGT
GGCTTGCGTGTGCATGCCACAAGTCTGAGCGAACAGTGCAGAAGTTCGTC
GGCACCCCCGGCCTGAAGAAGTCCGTCAGCGCCTTCTCCAAGGTTGCGAC
GCACCTGCACAAGTCCGCGCTGTCGAAGGTTGTGGTCCAAGACGCGCAAC
AAGTGAGTTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig118:76375..76635-

>mRNA_E-siliculosus-1a_F_contig118.1163.1 ID=mRNA_E-siliculosus-1a_F_contig118.1163.1|Name=mRNA_E-siliculosus-1a_F_contig118.1163.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=522bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig118:76375..76635- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTTGAAAGAGCTTGGAATTGCCAAGACCGTGACCTGCATGACGACGGACA
CGGCTGCGAACATGAAGAACGGGGTCGTCGAGCACATGCCGGGTTAGAGT
GGCTTGCGTGTGCATGCCACAAGTCTGAGCGAACAGTGCAGAAGTTCGTC
GGCACCCCCGGCCTGAAGAAGTCCGTCAGCGCCTTCTCCAAGGTTGCGAC
GCACCTGCACAAGTCCGCGCTGTCGAAGGTTGTGGTCCAAGACGCGCAAC
AAGTGAGTTGAGTTGAAAGAGCTTGGAATTGCCAAGACCGTGACCTGCAT
GACGACGGACACGGCTGCGAACATGAAGAACGGGGTCGTCGAGCACATGC
CGGGTTAGAGTGGCTTGCGTGTGCATGCCACAAGTCTGAGCGAACAGTGC
AGAAGTTCGTCGGCACCCCCGGCCTGAAGAAGTCCGTCAGCGCCTTCTCC
AAGGTTGCGACGCACCTGCACAAGTCCGCGCTGTCGAAGGTTGTGGTCCA
AGACGCGCAACAAGTGAGTTGA
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