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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10098.116.1 vs. uniprot
Match: D7G5U5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5U5_ECTSI) HSP 1 Score: 95.1 bits (235), Expect = 7.140e-21 Identity = 41/71 (57.75%), Postives = 49/71 (69.01%), Query Frame = 2 Query: 521 GSSLRGVDGSHFERGKDYDPSEGVDCPIPLGWGLLWHGLYVHGGADCSIPWHARLHMYLRVSGCSDAVTGK 733
G+ LR VDGSH + K+Y+ V+C IP GWGLLWHGL VHGG C+ W ARLH++LR GC A TGK
Sbjct: 80 GTILRIVDGSHLDVHKNYEQGRAVECQIPRGWGLLWHGLSVHGGDGCTAAWLARLHIFLRALGCPQAATGK 150
BLAST of mRNA_E-siliculosus-1a_F_contig10098.116.1 vs. uniprot
Match: D7G604_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G604_ECTSI) HSP 1 Score: 95.1 bits (235), Expect = 8.410e-20 Identity = 41/71 (57.75%), Postives = 49/71 (69.01%), Query Frame = 2 Query: 521 GSSLRGVDGSHFERGKDYDPSEGVDCPIPLGWGLLWHGLYVHGGADCSIPWHARLHMYLRVSGCSDAVTGK 733
G+ LR VDGSH + K+Y+ V+C IP GWGLLWHGL VHGG C+ W ARLH++LR GC A TGK
Sbjct: 191 GTILRIVDGSHLDVHKNYEQGSAVECQIPRGWGLLWHGLSVHGGDGCTAAWLARLHIFLRALGCPQAATGK 261
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 0 |
| Cds size | 456 |
| Model size | 733 |
| Exons | 2 |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927513.0319467-UTR-E-siliculosus-1a_F_contig10098:606..883 | 1622927513.0319467-UTR-E-siliculosus-1a_F_contig10098:606..883 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig10098 607..883 - |
| 1696318561.2236817-UTR-E-siliculosus-1a_F_contig10098:606..883 | 1696318561.2236817-UTR-E-siliculosus-1a_F_contig10098:606..883 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig10098 607..883 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10098.116.1 >prot_E-siliculosus-1a_F_contig10098.116.1 ID=prot_E-siliculosus-1a_F_contig10098.116.1|Name=mRNA_E-siliculosus-1a_F_contig10098.116.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=152bp
MVPSVTVGVILIVAPPKWEIRCGTSYGLSTVARMIKSSWRRPRAWSASPM
SVLRLYTETKIWIPSSSAWTTNTERRLEETLGSSLRGVDGSHFERGKDYD
PSEGVDCPIPLGWGLLWHGLYVHGGADCSIPWHARLHMYLRVSGCSDAVT
GK back to topmRNA from alignment at E-siliculosus-1a_F_contig10098:2..883- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig10098.116.1 ID=mRNA_E-siliculosus-1a_F_contig10098.116.1|Name=mRNA_E-siliculosus-1a_F_contig10098.116.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=882bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10098:2..883- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCAGGAGGCAAAACGAACTCTACGGGGTACGAGCAAACACGCGGCGGA
ACAAGAACATACCACCGCCTTTTTGGAGACACCCTATGGAAATCTAGCAA
AAAAAAGCTCCTGGATGACGGGAAGGTATTCGTCCCGCTCTCCCGGGCAG
AGCAGGTTGCCAAAGAAACATCCGCGACGATGCTCTCGAGTGTGGAAAAG
CTTGTGGTAAAGCAAGGATGTTCGATAAAGGACAGACTTAAAAAAAAAAA
TTCCGCATCAAAATCCAGGACAGCTTTATGGTTCCGTCCGTTACCGTGGG
GGTGATTTTGATAGTAGCTCCACCAAAATGGGAGATACGCTGCGGTACGT
CTTACGGGCTCTCGACGGTTGCTCGTATGATCAAATCCTCGTGGAGAAGA
CCACGTGCTTGGTCAGCCTCGCCAATGTCGGTACTCAGGTAAGCTCGATC
AGCAGCGGTACCTGCCGTGCCTGTGGTCGTGGCGGGTGACCGGACGTTGT
AGCGGCGTTAGGAAGTAATGTAGACGAATGATGTTAGACAAATACATATT
TTCACACCATGGACTACTCCATGCCCGAATGCCCCAGACTCTACACAGAG
ACCAAGATCTGGATACCATCCTCAAGCGCCTGGACGACAAACACGGAGCG
TCGACTCGAGGAAACGCTCGGTAGTAGCCTTCGCGGTGTGGATGGCAGTC
ATTTCGAGAGAGGCAAGGATTACGATCCCAGCGAAGGCGTCGATTGCCCA
ATACCACTGGGCTGGGGATTATTGTGGCACGGGTTGTACGTGCACGGGGG
CGCCGATTGCTCTATCCCATGGCATGCCCGACTGCACATGTATCTTCGGG
TGTCGGGTTGCTCGGATGCAGTTACCGGCAAG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10098:2..883- >mRNA_E-siliculosus-1a_F_contig10098.116.1 ID=mRNA_E-siliculosus-1a_F_contig10098.116.1|Name=mRNA_E-siliculosus-1a_F_contig10098.116.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=912bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10098:2..883- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTTCCGTCCGTTACCGTGGGGGTGATTTTGATAGTAGCTCCACCAAA
ATGGGAGATACGCTGCGGTACGTCTTACGGGCTCTCGACGGTTGCTCGTA
TGATCAAATCCTCGTGGAGAAGACCACGTGCTTGGTCAGCCTCGCCAATG
TCGGTACTCAGATGGTTCCGTCCGTTACCGTGGGGGTGATTTTGATAGTA
GCTCCACCAAAATGGGAGATACGCTGCGGTACGTCTTACGGGCTCTCGAC
GGTTGCTCGTATGATCAAATCCTCGTGGAGAAGACCACGTGCTTGGTCAG
CCTCGCCAATGTCGGTACTCAGACTCTACACAGAGACCAAGATCTGGATA
CCATCCTCAAGCGCCTGGACGACAAACACGGAGCGTCGACTCGAGGAAAC
GCTCGGTAGTAGCCTTCGCGGTGTGGATGGCAGTCATTTCGAGAGAGGCA
AGGATTACGATCCCAGCGAAGGCGTCGATTGCCCAATACCACTGGGCTGG
GGATTATTGTGGCACGGGTTGTACGTGCACGGGGGCGCCGATTGCTCTAT
CCCATGGCATGCCCGACTGCACATGTATCTTCGGGTGTCGGGTTGCTCGG
ATGCAGTTACCGGCAAGACTCTACACAGAGACCAAGATCTGGATACCATC
CTCAAGCGCCTGGACGACAAACACGGAGCGTCGACTCGAGGAAACGCTCG
GTAGTAGCCTTCGCGGTGTGGATGGCAGTCATTTCGAGAGAGGCAAGGAT
TACGATCCCAGCGAAGGCGTCGATTGCCCAATACCACTGGGCTGGGGATT
ATTGTGGCACGGGTTGTACGTGCACGGGGGCGCCGATTGCTCTATCCCAT
GGCATGCCCGACTGCACATGTATCTTCGGGTGTCGGGTTGCTCGGATGCA
GTTACCGGCAAG back to top
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