mRNA_E-siliculosus-1a_F_contig10098.116.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10098.116.1
Unique NamemRNA_E-siliculosus-1a_F_contig10098.116.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig10098.116.1 vs. uniprot
Match: D7G5U5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5U5_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 7.140e-21
Identity = 41/71 (57.75%), Postives = 49/71 (69.01%), Query Frame = 2 
Query:  521 GSSLRGVDGSHFERGKDYDPSEGVDCPIPLGWGLLWHGLYVHGGADCSIPWHARLHMYLRVSGCSDAVTGK 733
            G+ LR VDGSH +  K+Y+    V+C IP GWGLLWHGL VHGG  C+  W ARLH++LR  GC  A TGK
Sbjct:   80 GTILRIVDGSHLDVHKNYEQGRAVECQIPRGWGLLWHGLSVHGGDGCTAAWLARLHIFLRALGCPQAATGK 150
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BLAST of mRNA_E-siliculosus-1a_F_contig10098.116.1 vs. uniprot
Match: D7G604_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G604_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 8.410e-20
Identity = 41/71 (57.75%), Postives = 49/71 (69.01%), Query Frame = 2 
Query:  521 GSSLRGVDGSHFERGKDYDPSEGVDCPIPLGWGLLWHGLYVHGGADCSIPWHARLHMYLRVSGCSDAVTGK 733
            G+ LR VDGSH +  K+Y+    V+C IP GWGLLWHGL VHGG  C+  W ARLH++LR  GC  A TGK
Sbjct:  191 GTILRIVDGSHLDVHKNYEQGSAVECQIPRGWGLLWHGLSVHGGDGCTAAWLARLHIFLRALGCPQAATGK 261
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10098.116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5U5_ECTSI7.140e-2157.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G604_ECTSI8.410e-2057.75Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10098contigE-siliculosus-1a_F_contig10098:2..883 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size456
Model size733
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10098.116.1prot_E-siliculosus-1a_F_contig10098.116.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10098 2..606 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927513.003868-CDS-E-siliculosus-1a_F_contig10098:1..2961622927513.003868-CDS-E-siliculosus-1a_F_contig10098:1..296Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10098 2..296 -
1696318561.1845872-CDS-E-siliculosus-1a_F_contig10098:1..2961696318561.1845872-CDS-E-siliculosus-1a_F_contig10098:1..296Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10098 2..296 -
1622927513.0158997-CDS-E-siliculosus-1a_F_contig10098:445..6061622927513.0158997-CDS-E-siliculosus-1a_F_contig10098:445..606Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10098 446..606 -
1696318561.1990507-CDS-E-siliculosus-1a_F_contig10098:445..6061696318561.1990507-CDS-E-siliculosus-1a_F_contig10098:445..606Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10098 446..606 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927513.0319467-UTR-E-siliculosus-1a_F_contig10098:606..8831622927513.0319467-UTR-E-siliculosus-1a_F_contig10098:606..883Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10098 607..883 -
1696318561.2236817-UTR-E-siliculosus-1a_F_contig10098:606..8831696318561.2236817-UTR-E-siliculosus-1a_F_contig10098:606..883Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10098 607..883 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10098.116.1

>prot_E-siliculosus-1a_F_contig10098.116.1 ID=prot_E-siliculosus-1a_F_contig10098.116.1|Name=mRNA_E-siliculosus-1a_F_contig10098.116.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=152bp
MVPSVTVGVILIVAPPKWEIRCGTSYGLSTVARMIKSSWRRPRAWSASPM
SVLRLYTETKIWIPSSSAWTTNTERRLEETLGSSLRGVDGSHFERGKDYD
PSEGVDCPIPLGWGLLWHGLYVHGGADCSIPWHARLHMYLRVSGCSDAVT
GK
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mRNA from alignment at E-siliculosus-1a_F_contig10098:2..883-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10098.116.1 ID=mRNA_E-siliculosus-1a_F_contig10098.116.1|Name=mRNA_E-siliculosus-1a_F_contig10098.116.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=882bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10098:2..883- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCAGGAGGCAAAACGAACTCTACGGGGTACGAGCAAACACGCGGCGGA
ACAAGAACATACCACCGCCTTTTTGGAGACACCCTATGGAAATCTAGCAA
AAAAAAGCTCCTGGATGACGGGAAGGTATTCGTCCCGCTCTCCCGGGCAG
AGCAGGTTGCCAAAGAAACATCCGCGACGATGCTCTCGAGTGTGGAAAAG
CTTGTGGTAAAGCAAGGATGTTCGATAAAGGACAGACTTAAAAAAAAAAA
TTCCGCATCAAAATCCAGGACAGCTTTATGGTTCCGTCCGTTACCGTGGG
GGTGATTTTGATAGTAGCTCCACCAAAATGGGAGATACGCTGCGGTACGT
CTTACGGGCTCTCGACGGTTGCTCGTATGATCAAATCCTCGTGGAGAAGA
CCACGTGCTTGGTCAGCCTCGCCAATGTCGGTACTCAGGTAAGCTCGATC
AGCAGCGGTACCTGCCGTGCCTGTGGTCGTGGCGGGTGACCGGACGTTGT
AGCGGCGTTAGGAAGTAATGTAGACGAATGATGTTAGACAAATACATATT
TTCACACCATGGACTACTCCATGCCCGAATGCCCCAGACTCTACACAGAG
ACCAAGATCTGGATACCATCCTCAAGCGCCTGGACGACAAACACGGAGCG
TCGACTCGAGGAAACGCTCGGTAGTAGCCTTCGCGGTGTGGATGGCAGTC
ATTTCGAGAGAGGCAAGGATTACGATCCCAGCGAAGGCGTCGATTGCCCA
ATACCACTGGGCTGGGGATTATTGTGGCACGGGTTGTACGTGCACGGGGG
CGCCGATTGCTCTATCCCATGGCATGCCCGACTGCACATGTATCTTCGGG
TGTCGGGTTGCTCGGATGCAGTTACCGGCAAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10098:2..883-

>mRNA_E-siliculosus-1a_F_contig10098.116.1 ID=mRNA_E-siliculosus-1a_F_contig10098.116.1|Name=mRNA_E-siliculosus-1a_F_contig10098.116.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=912bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10098:2..883- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTTCCGTCCGTTACCGTGGGGGTGATTTTGATAGTAGCTCCACCAAA
ATGGGAGATACGCTGCGGTACGTCTTACGGGCTCTCGACGGTTGCTCGTA
TGATCAAATCCTCGTGGAGAAGACCACGTGCTTGGTCAGCCTCGCCAATG
TCGGTACTCAGATGGTTCCGTCCGTTACCGTGGGGGTGATTTTGATAGTA
GCTCCACCAAAATGGGAGATACGCTGCGGTACGTCTTACGGGCTCTCGAC
GGTTGCTCGTATGATCAAATCCTCGTGGAGAAGACCACGTGCTTGGTCAG
CCTCGCCAATGTCGGTACTCAGACTCTACACAGAGACCAAGATCTGGATA
CCATCCTCAAGCGCCTGGACGACAAACACGGAGCGTCGACTCGAGGAAAC
GCTCGGTAGTAGCCTTCGCGGTGTGGATGGCAGTCATTTCGAGAGAGGCA
AGGATTACGATCCCAGCGAAGGCGTCGATTGCCCAATACCACTGGGCTGG
GGATTATTGTGGCACGGGTTGTACGTGCACGGGGGCGCCGATTGCTCTAT
CCCATGGCATGCCCGACTGCACATGTATCTTCGGGTGTCGGGTTGCTCGG
ATGCAGTTACCGGCAAGACTCTACACAGAGACCAAGATCTGGATACCATC
CTCAAGCGCCTGGACGACAAACACGGAGCGTCGACTCGAGGAAACGCTCG
GTAGTAGCCTTCGCGGTGTGGATGGCAGTCATTTCGAGAGAGGCAAGGAT
TACGATCCCAGCGAAGGCGTCGATTGCCCAATACCACTGGGCTGGGGATT
ATTGTGGCACGGGTTGTACGTGCACGGGGGCGCCGATTGCTCTATCCCAT
GGCATGCCCGACTGCACATGTATCTTCGGGTGTCGGGTTGCTCGGATGCA
GTTACCGGCAAG
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