prot_E-siliculosus-1a_F_contig1174.1129.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1174.1129.1
Unique Nameprot_E-siliculosus-1a_F_contig1174.1129.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length119
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1174.1129.1 vs. uniprot
Match: D8LBY4_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBY4_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 7.290e-38
Identity = 69/98 (70.41%), Postives = 78/98 (79.59%), Query Frame = 0 
Query:    1 PIPNALGALEGLANLALGSNQLADSIPPELGNLAARTHLELGGNRPSYESRRTHLGALTELKESYPSNNRLLDTRRGPIPNAWGAFEGLVYLALGSKQ 98
            PIPNA GAL+GLA+ ALGSNQLA SIPPELG+ AA THLELG N  +  +    LGALTELKES+PS N+LLDTR  PIPNAWGA +GL +LALGS Q
Sbjct:    5 PIPNAWGALQGLAHRALGSNQLAGSIPPELGSFAALTHLELGENSQTMRTIPKELGALTELKESFPSYNQLLDTR--PIPNAWGALQGLAHLALGSNQ 100
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1174.1129.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBY4_ECTSI7.290e-3870.41Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..105
e-value: 2.4E-12
score: 48.5
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 2..98

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1174contigE-siliculosus-1a_F_contig1174:17290..23437 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1174.1129.1mRNA_E-siliculosus-1a_F_contig1174.1129.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1174 17290..23438 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1174.1129.1 ID=prot_E-siliculosus-1a_F_contig1174.1129.1|Name=mRNA_E-siliculosus-1a_F_contig1174.1129.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=119bp
PIPNALGALEGLANLALGSNQLADSIPPELGNLAARTHLELGGNRPSYES
RRTHLGALTELKESYPSNNRLLDTRRGPIPNAWGAFEGLVYLALGSKQPR
RFHPAGARKPRRPDTPRP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf