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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1174.1129.1 vs. uniprot
Match: D8LBY4_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBY4_ECTSI) HSP 1 Score: 133 bits (334), Expect = 7.290e-38 Identity = 69/98 (70.41%), Postives = 78/98 (79.59%), Query Frame = 1
Query: 1 PIPNALGALEGLANLALGSNQLADSIPPELGNLAARTHLELGGNRPSYESRRTHLGALTELKESYPSNNRLLDTRRGPIPNAWGAFEGLVYLALGSKQ 294
PIPNA GAL+GLA+ ALGSNQLA SIPPELG+ AA THLELG N + + LGALTELKES+PS N+LLDTR PIPNAWGA +GL +LALGS Q
Sbjct: 5 PIPNAWGALQGLAHRALGSNQLAGSIPPELGSFAALTHLELGENSQTMRTIPKELGALTELKESFPSYNQLLDTR--PIPNAWGALQGLAHLALGSNQ 100
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 0 |
| Stop | 1 |
| Cds size | 357 |
| Model size | 358 |
| Exons | 5 |
| Ec32 ortholog | Ec-20_003740.1 |
| Ec32 ortholog description | Hypothetical leucine rich repeat protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927695.3768644-UTR-E-siliculosus-1a_F_contig1174:23437..23438 | 1622927695.3768644-UTR-E-siliculosus-1a_F_contig1174:23437..23438 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1174 23438..23438 + |
| 1696318641.415677-UTR-E-siliculosus-1a_F_contig1174:23437..23438 | 1696318641.415677-UTR-E-siliculosus-1a_F_contig1174:23437..23438 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1174 23438..23438 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1174.1129.1 >prot_E-siliculosus-1a_F_contig1174.1129.1 ID=prot_E-siliculosus-1a_F_contig1174.1129.1|Name=mRNA_E-siliculosus-1a_F_contig1174.1129.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=119bp
PIPNALGALEGLANLALGSNQLADSIPPELGNLAARTHLELGGNRPSYES
RRTHLGALTELKESYPSNNRLLDTRRGPIPNAWGAFEGLVYLALGSKQPR
RFHPAGARKPRRPDTPRP* back to topmRNA from alignment at E-siliculosus-1a_F_contig1174:17290..23438+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1174.1129.1 ID=mRNA_E-siliculosus-1a_F_contig1174.1129.1|Name=mRNA_E-siliculosus-1a_F_contig1174.1129.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6149bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1174:17290..23438+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCCATCCCCAACGCGTTGGGCGCCCTTGAAGGACTCGCGAATCTTGCCCT
GGGTAGCAACCAACTCGCTGGTGAGAGGAGGTGGACTGAAATCTTTCCAT
CCCAACTTCCACAACATGACCGACTCACTAGCCCGAAGGTGGCGGAAGGT
ATTTCGCGTGGCGTTGGCGCAACATTTTCCTACCAACGCGTGGGCGGGAC
GCACGTTCAAGAAGCCGCAGCCTTGATGAATTGCCAGCTAATGGACCATT
CTACATCAAATTGAACCCACCACAGGACTAATACTGCTGGAGTTTGGGAA
CCCACGCGATCTGTAACGAACTTTACCTTCGTGCCAACCAGCGGAGCGTC
GAGTTCCGATTTGCCGGTATCCGCGAATGGCTTTGTCTAGCGCATGTGTG
TATGACTTACCAACTAACGAGGGACACGTAATCGATCACCCAATCGACAA
AAATATTTTTTGAATCGAAGCTGCCGACGTCTAAAATATTATGCCCCAGC
GCACTGCTGACAAACAGCACACAACACTCGCGACCTTGTGGGACACATGG
CTGCGAGCTTCAACATTGGATGAATGTCAGCGAAAAATGCCTACCGGACC
GTTACGGACCGAGTACGTAGTCGAGGACGCTCCAGATAACAACAAACGAA
GCTAAGACGACTGCAAAATAGGTGATACTGAACGTCCTGCGCATACAAGA
GGCTCGACCTATGGCGTGGTGGTCAGGTGGGGCATGCTTCACGAAATCTC
CTCTTCGGCGAACCAGAAAACATCAGACTTGTTTGGCTTTCCAAAAGTCT
AACTTCAGATGCTGCTGTGCGGTTCAATTGTAGGACGCTTCAACCACACA
CCGTGACCGTGTGTGACCACGGGATTCAGCACAGTTCTTCCCTCACACAT
CCTATGTATTTGTTGCCTGTTAAAGCGGATAGAAGGGTCGAAGGTCTTAT
GTCTGTAGATCTACCCAAAACGAAAGGTGCTCGAAGCGGTCGAAAATCGG
ACAGCACTTCAGCACCCAACACCCTGCTCGCAGCTCACCGAACTCCACGA
AAAAGGGCCCGATTCGAAAGTCGTGGACCGCAATCTGCAACTTATCGCAA
CGGCTAAATATTGGAGATAGAATTTGGAAAGCCTAAATAGGCAGGCGTTT
TCTGTTGCGTAACTCCACTGCCCAGTTAAAAACTTTGTTTTTTGCCTTCC
TCTCATTCTTTCGGATTGCCGCTTTCGCTTTGATCGGCTAAGTCGTTGAG
ATGCCACCGCCCGAGAATCGGGAACGCAGCTTACCCGGGCGGGTGTGGGC
ATGTGTATGAGCACATCTCGGCGAAACTTCGAAAGAGCGACTGTGGGAGC
TAAAGAGCAAGGGGACCAGACACAGCACCACGCCAGTCGAACAGTACGCC
GCGTACACCTTCGGTGCTGACGTGTCGGGTGTTCTTGGGCAATAATTGAT
GCTCGGTGGGCTTTCTACTCCTTCCATAAGGCACACATTGCATGTTTTGT
ATCCTTCGCGATACAAGATCAAGAGGACCCGTGCCTCCATTAGCCAGTTT
TCATCATTCAACATTTTCGATTTGTGAAGCTCAAGAGAAGAGAGAGCAGC
GTGAGCAAGCAAAGCTGCAGCAACCCCGTACAGCCTCATAGCCACACAAC
ACACCGCATAAACGGTGCTGTGATGCTCCACGAGCTGCCTTTTCCCGCCG
TACAGGCACAAATGATATCTCCTGGTTCTTTCGCGGTACAGGTCATGCCA
CAAATGGCAGTTTCCCTTTGTCAACATGTCAGCGTTGGGAAGATGAGCGG
TTACGAGAGAGAGAGACAGCCCCACACACCCAGCATGAGCAGCAGGATCA
GCTACACTAGCACGGCACAGCCGTACGACACACCGCACACACCTTTTCGG
CGCTGTCACGTCATTTCTTTACAACACTGATCTTGTGGGAGTCTTGTGAA
ACAATCGTCAAGGTTGTCCCTAGATTTGAAGAGAATACTGGGCCTGATAT
TGTACCGCCCGCTAAGTTAGACACGACGGACAAATGTTGTGGATTCCTAA
AGAATTTCAACATGAACAAAAACCGCGATACTGTTTCGTTAATATTTTCT
CAAACGCCCAGTATTAGCTACCTGTAAGCCGGTTGGAGTAGAGAGACAGC
TCCCGTAGGTTGCTGAGAGCTCCCAGCGCCTCGGGGATAGGCCCTGCATA
CGGATTAAAGCAGGGGAAGCACAGAATAGAGATAAAAAAAAAGTCCCAAA
ACAGCTTGTCCCGCCCAGCTTCTGAAACATGCATGGCCTCGTAGAAGATT
CGACCTCTCGTCGAGTGAGTGGCGATTTTCTGACAACATTACCTGTTGCA
CAGGCCCCATCCCCGAGCTTCTGAGAGCACTCAGCGAGCCAAACGAGCTT
TGGCTGAACGAGAACAAGCTAACCAGCAAGGGAGGATGAGGTTTACACAT
CTCCTTTCTAGAATATGAGTCACATCGTGTGCAAGAGGGGGACTCACCTT
CTAGAAACCGTGACCTTGGTGCGGCATTGAACTGTCCACTCTACATCAGT
TCGAATTTTATCGCAGGGTCTACACCGCCGGACCTTGGGAAGCTGGGGCT
CTTGCGACACCTATCTGTTTTCACAGGAAATTGAGTGGTGAGTTTCGATT
CACCGGCTTCGATGACTAACTCTTTTTAGGACAACTGTCTTCGTTCTGGG
AGACGTGATGGGGCTAGCAGGTGTTCTTGAACAACAAACGTGACACTGTT
AACACATTCTCACCAGTGAGCTGGTTAAAGTAGAGCCAAAGGGTCTGCAG
TTGGCTCAGGCCCCCTAGCTCCTGTGGGATGCATCCTGCTCAAGCAGCAC
AGCAACAAGACATGATATGTTCACGTAATCAAGATTGCAGAGCTCTGCAA
CATACAACTCACCCATAAGGAAGGGTGATTAGGTGATGTTCTGAAATTTG
AGTTGCTCACCCGTGGGTGATAAAGTCTTCTAGATAGAACCCGGGGGATT
TCATTACCGCTCCCGCACTAACGTCGGATGCACTTGTTCGCTACAGATTC
CATCCCGCCAGAGCTAGGAAATCTCGCAGCCCGGACACACCTCGAGCTTG
GGGGAAACCGGCCAAGCTATGAGTCACGACGGACACATGTTGCACTTTTC
CAGAACGACGATACGATAGCTTCAACACGCCTCTCACCCACGCGTCCGGA
CGATAAATTGTTTTCAGCTTTAAACCACTCACCGCTGAGCTTGTTCCAAG
AGAGATCCAGCTGTTGCAGGTTGCCGAGCTGTCCTAGAGTCGCTGGAATC
TCGCCTGCATGGTAGTATGTAGAAGAACGGGTATGGTGAAATGGTGCAGA
ATAGATCTACAGTATGTCCTGAGACTTCCCGAAAGCGTGCCTCGCCTGCG
CGTGTTCTACAACACCGACTCACCCACGGCGTTCGGCGGCACATATTCTG
CATATGCCTGAAGCTTCCTCACATCATTTTCTCAAATCTCGTGTTGCTGT
TGGGCGTTTTGTGCCGATACCGAAGCAGCTTGGAGCTCTTACAGAGCTCA
AGGAGTCTTATCCGAGCAATAATCGGCTTCTAGACACAAGGCGGGGTCAT
TCTATTTTCAGTCTTACCATCTCTAAGCCTGCCGGTTCCACACTACCTCC
TCACCCACGCCCATCAAGCTTCTAGAAGCTTGATGTCCTTGAAGCCAGGG
GACCCTACTCTCTAGGCCGCGCAAAATTTTCACTCGCTTGCTTGCGTGAG
TGGTACAAAACAAATCCGTTGGTACAAATGTCGACTTTCTGCTCGAGGAC
CCATCCCCAACGCGTGGGGAGCCTTTGAAGGACTCGTGTATCTTGCCCTG
GGTAGCAAGCAACCTCGCAGGTGAGAGGAGGTGGACTGAAATCTTTCCAT
CCCAACTTCCACAACATCACCGACTCACTAACCCGAAGGTGACGGTGGGT
ATTTCGCGCAAGGCGTTGGCGCAACATTTTCCTACCAACGCGTGAGTGGG
ACGCACGCTCCAGAAGCCGCAGCCTTGAATTGTCGGCAGGTAAAGGACCA
CCCTACATCATATTGAACCCATCACAGGACCATCACCACTCGAGTTTGGA
ACGTGGGCGATCTGCAACGAACTTTACCTTCATGCCAACCAGCTGAGCGT
CGAGTTCCGATCTGCCGGCATCAGTGAATGGCTTCGTCTAGCGCATGTTT
GTATGACCTACCCACGAAGCCGCCAACTTCTAAACGATTTTGCCCCAGTG
CACCGCTGACAAACAGCACACTCGCGACCTTCTGGGACACATGGCTGCGA
ACTTCAACGTTGGATGAATGTCAGCGAACAAGCCTACCGGACCATTGCGG
ACCGAGTACGTACTCGAGGACGCTCCAGATAACGCCAAACGAAGCAAAAA
ACGACTGCAATATAAGCGATACCGAACGTCTTGCGCATACAAGAGGCACA
TGGCGAACGCTTCACTAAATCTCCTCTTCGGCGAACCAGGAAACGTCTGA
CTTGTTAGGTTTTCCAAAGTCTAGCATCGCGAAAACGCATCCGCACACAG
TCTCGAGGGTACAATTGTAGGTTGTCGGATTGGTAGCCTTTGCACTATTC
TACGGATTTGCGGTCCGCAAATTAAGGAAGGAGCCTACGTTCAGTGAGTT
TAGTGAGCTATGAGTAGAGGATTATTGATACTGCTGTGCGGTCTGACTTT
CGAACCTTCAACTACAGTGACCGCGCGAACTACCGCCTATGTGAGTGTGG
GTGATGGCGGAATTCACGACGGTCACGTGACGTGGATTCCCACCAAATTC
GGCGTGGATCTAAACCACGATACTTGTTTCTCCAACATGCGTCTCACGCA
GGCGTCGGTAGGACACACTATTAGAAGCCAGAGAAAGCACTTTCAAATTT
GCACACGTCCGCCCACTATTAAGTCACCTGTATGCTGGTTGGAGCTGAGC
AACAGCTCCCGCAGGTTGCTAAGAGCTCCTAGCACGTCCGGGATCGGCCC
TGTACACGAATTACAGCCGGGGAAACAGAGCATGGAGAAATCGAAGAAAT
TCATTTATCGAAAACATAAAACATGCATGGTCTTGTAGAGGTTTGCGTCG
GTGAGTGGTGAATTCTGAGGCACCGGCAACCCATAACGAGCCGAGCGAGC
TTTGGCTAACGAGAACAAGCTCCCCACGGAGAGGATGAGACTTGAAGGTT
TGATTTCTAGTGTGGGCGGGGTCAAGACCTCCACAAGCCGCAATTTTGGT
GAAGTGTCGGCATTGAATCTTCCACTCTACATCATGTCGAACCCACTACA
GGGTCTGTACCGCCGGAGCTTGGAAAGCTGGGGCTCTTACGACACCTATG
GACACACGCAGAACCCGCTTGCAAGTAAAGCGGGCCAGCTGCCTCTCGCT
CGCACTCTACGTGCTCTTCCGCTACCTCTACCTTCACGGAAAGCGTTCGT
CCCGTGGATCCTTCGGCCTTTCGATTATCGGGCGACAGGTATGCATAGTT
GTTCAGTGTTCTTGAAGCAAGCCCGCAACAACACACATCATACATGCATA
CCCAACCCCAACTGAAATTCATTGCTATGACAAGCGCAGCAACACATACA
CCACGAATATTGCACCGCTGTTTGTTGGCACACGCGCAGCGGAAGCAGAG
TGCGTGCTGAACGCGTAACGGGCGACGATGGAAGTGCGGGTGGGTCCAAA
ACACGCAGTCGTGAATATCCTTCGACCTTTCGCTACGCCACTATCACAAA
ACAATGGGACGTTTTCAGAATACCTCGGAATAAATTCGAAGAACACAACA
AATATAACTCTCTAAGGGAGACGCGCCTAGAGACAGGAGGGTCTACGGTA
CTTTACAGATTTCGGAACACCCACGCCCCTGCCCCCAGCAAAATGTATAT
TTCTGGAGGAGAATTGTTGGACATGTTGCTGTGCATGGACCGCATGGTTT
CTTCAAAATCCAGCTTCGTAACTTGCGTCGTGGATTTGATAGAAAATGCC
TCATGTCTGAACTGTGGCAAAAAAATCGGGAACCGAAACTCAATCCTCTT
GAGAAGGTCCCCGTGCCAACTGCGGATGCCCTTTTCGCTACAGGTTCCAT
CCCGCCGGAGCTCGGAAACCTCGCCGCCCTGACACGCCTCGACCTTAGG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1174:17290..23438+ >mRNA_E-siliculosus-1a_F_contig1174.1129.1 ID=mRNA_E-siliculosus-1a_F_contig1174.1129.1|Name=mRNA_E-siliculosus-1a_F_contig1174.1129.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=714bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1174:17290..23438+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCCATCCCCAACGCGTTGGGCGCCCTTGAAGGACTCGCGAATCTTGCCCT
GGGTAGCAACCAACTCGCTGCCCATCCCCAACGCGTTGGGCGCCCTTGAA
GGACTCGCGAATCTTGCCCTGGGTAGCAACCAACTCGCTGATTCCATCCC
GCCAGAGCTAGGAAATCTCGCAGCCCGGACACACCTCGAGCTTGGGGGAA
ACCGGCCAAGCTATGAGTCACGACGGACACATATTCCATCCCGCCAGAGC
TAGGAAATCTCGCAGCCCGGACACACCTCGAGCTTGGGGGAAACCGGCCA
AGCTATGAGTCACGACGGACACATCTTGGAGCTCTTACAGAGCTCAAGGA
GTCTTATCCGAGCAATAATCGGCTTCTAGACACAAGGCGGGCTTGGAGCT
CTTACAGAGCTCAAGGAGTCTTATCCGAGCAATAATCGGCTTCTAGACAC
AAGGCGGGGACCCATCCCCAACGCGTGGGGAGCCTTTGAAGGACTCGTGT
ATCTTGCCCTGGGTAGCAAGCAACCTCGCAGGACCCATCCCCAACGCGTG
GGGAGCCTTTGAAGGACTCGTGTATCTTGCCCTGGGTAGCAAGCAACCTC
GCAGGTTCCATCCCGCCGGAGCTCGGAAACCTCGCCGCCCTGACACGCCT
CGACCTTAGGTTCCATCCCGCCGGAGCTCGGAAACCTCGCCGCCCTGACA
CGCCTCGACCTTAG back to top
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