mRNA_E-siliculosus-1a_F_contig1008.108.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1008.108.1 vs. uniprot
Match: A0A6H5L2L5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2L5_9PHAE) HSP 1 Score: 464 bits (1195), Expect = 2.400e-160 Identity = 289/312 (92.63%), Postives = 292/312 (93.59%), Query Frame = 3 Query: 3 MRYSGATLAAGGMFLALIVQQTAGFLCPTTINPGSSAAHRA----ARSASPVRRQNDRVEQEGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAVAPQRRKRPKVPLLPATLSKALIAGVFVLGIGTGVTVDSAINTDPRDLASRDAIDRNAPNPNICQTYGSSAMVVDQRVFVTFNPFSLHVSQADTKPGCVLRSSNVVEVLQRKRGLLTNEDVETCKGGMNTWGYVGDLNDHPQLSCVYQSDDAQNEFLSNPKYGLGEDVYDDDRAAAAKKSAGSEPANGPRVMSGTVQTVVTDRAKM 926
MRYSGATLAAGGMFLALIVQ TAGFLCPTTINP SSAAHRA + SASPVRRQN RV++EGR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KRPKVPLLP TLSKALIAGVFVLGIGTGVTVDSAINTDPRDLASRDAIDRNAPNPNICQTYGSSAMVVDQRVFVTFNPFSLHVSQADTKPGCVLRSSNVVEVLQRKRGLLTNEDVE CKGGMNTWGYVGDLNDHPQLSCVYQSDDAQNEFLSNPKYGLGEDVYDDDRAAAAKKSAGSEPANGPRVMSGTVQTVVTDRAKM
Sbjct: 1 MRYSGATLAAGGMFLALIVQ-TAGFLCPTTINPHSSAAHRAVGSGSTSASPVRRQNGRVKREGRRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXKRPKVPLLPTTLSKALIAGVFVLGIGTGVTVDSAINTDPRDLASRDAIDRNAPNPNICQTYGSSAMVVDQRVFVTFNPFSLHVSQADTKPGCVLRSSNVVEVLQRKRGLLTNEDVEKCKGGMNTWGYVGDLNDHPQLSCVYQSDDAQNEFLSNPKYGLGEDVYDDDRAAAAKKSAGSEPANGPRVMSGTVQTVVTDRAKM 310
BLAST of mRNA_E-siliculosus-1a_F_contig1008.108.1 vs. uniprot
Match: A0A836CMQ9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMQ9_9STRA) HSP 1 Score: 271 bits (693), Expect = 1.330e-84 Identity = 138/197 (70.05%), Postives = 159/197 (80.71%), Query Frame = 3 Query: 324 RKRPKVPLLPATLSKALIAGVFVLGIGTGVTVDSAINTDPRDLASRDAIDRNAPNPNICQTYGSSAMVVDQRVFVTFNPFSLHVSQADTKPGCVLRSSNVVEVLQRKRGLLTNEDVETCKGGMNTWGYVGDLNDHPQLSCVYQSDDAQNEFLSNPKYGLGEDVYDDDRAA-----AAKKSAGSEPANGPRVMSGTVQ 899
R+R K + KAL+AG+FVLGIGTGVTVDSAINT+P+DLASRDAIDRNAPNP ICQTYGSSAMVVD+RVFVTFNPFS++V+QAD KPGCVLR SN V+VL+R R L+ + +VETCKGGMNTW +VGDLN PQLSCVYQSDDAQNEF+S+PK GLGEDVYDDDRAA AA+ A S GP+ V+
Sbjct: 101 RRRDKGFFNSVKIPKALLAGIFVLGIGTGVTVDSAINTNPKDLASRDAIDRNAPNPGICQTYGSSAMVVDERVFVTFNPFSIYVAQADVKPGCVLRQSNFVQVLKR-RNLINDAEVETCKGGMNTWAFVGDLNGKPQLSCVYQSDDAQNEFVSDPKIGLGEDVYDDDRAAEQAARAARAVAASATKPGPQAQGMQVE 296
BLAST of mRNA_E-siliculosus-1a_F_contig1008.108.1 vs. uniprot
Match: A0A7R9WGK2_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WGK2_9STRA) HSP 1 Score: 249 bits (636), Expect = 2.300e-77 Identity = 118/168 (70.24%), Postives = 144/168 (85.71%), Query Frame = 3 Query: 348 LPATLSKALIAGVFVLGIGTGVTVDSAINTDPRDLASRDAIDRNAPNPNICQTYGSSAMVVDQRVFVTFNPFSLHVSQADTKPGCVLRSSNVVEVLQRKRGLLTNEDVETCKGGMNTWGYVGDLNDHPQLSCVYQSDDAQNEFLSNPKYGLGEDVYDDDRAAAAKKSA 851
LP ++SKAL+AG+FVLGIGTGVT++S INT P+DLASRDAIDRNAPNP +C YG+SAM DQRVFV+FNPF+++V+QAD KP CVLR SNVV+VL R+R L+ + +V TCK +NTW +VGDL++ PQLSCVYQSDDAQNEFLSNPK G+GEDVYDDDRA+ +K A
Sbjct: 16 LPESVSKALLAGIFVLGIGTGVTIESQINTSPKDLASRDAIDRNAPNPTLCAQYGASAMAFDQRVFVSFNPFNVYVAQADVKPACVLRQSNVVQVL-RERKLINDNEVRTCKQKVNTWAFVGDLDNMPQLSCVYQSDDAQNEFLSNPKLGIGEDVYDDDRASLERKRA 182
BLAST of mRNA_E-siliculosus-1a_F_contig1008.108.1 vs. uniprot
Match: A0A7S3PTW4_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PTW4_9STRA) HSP 1 Score: 250 bits (639), Expect = 2.520e-76 Identity = 121/177 (68.36%), Postives = 149/177 (84.18%), Query Frame = 3 Query: 348 LPATLSKALIAGVFVLGIGTGVTVDSAINTDPRDLASRDAIDRNAPNPNICQTYGSSAMVVDQRVFVTFNPFSLHVSQADTKPGCVLRSSNVVEVLQRKRGLLTNEDVETCKGGMNTWGYVGDLNDHPQLSCVYQSDDAQNEFLSNPKYGLGEDVYDDDRAA--AAKKSAGSEPANG 872
LP ++S AL+AGVFVLGIGTGVTVDS INT P+DLASRDA+D+ APNP +C TYG+SAM DQRVFV+FNPF+++V+QAD KP CVLR+SNVV VLQ RGL+ ++V +CK MNTW +VGDLND+PQLSCVY+S+DAQNEFLS+PKYG+GEDV+DDDR A AA+K + + NG
Sbjct: 111 LPESVSTALLAGVFVLGIGTGVTVDSQINTSPKDLASRDAVDQAAPNPRLCSTYGASAMAFDQRVFVSFNPFNVYVAQADVKPACVLRASNVVPVLQ-DRGLINGKEVRSCKQNMNTWAFVGDLNDYPQLSCVYRSEDAQNEFLSDPKYGIGEDVWDDDRVAIEAARKGSVKKVKNG 286
BLAST of mRNA_E-siliculosus-1a_F_contig1008.108.1 vs. uniprot
Match: A0A7S2UF23_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UF23_9STRA) HSP 1 Score: 248 bits (634), Expect = 1.100e-75 Identity = 117/166 (70.48%), Postives = 143/166 (86.14%), Query Frame = 3 Query: 348 LPATLSKALIAGVFVLGIGTGVTVDSAINTDPRDLASRDAIDRNAPNPNICQTYGSSAMVVDQRVFVTFNPFSLHVSQADTKPGCVLRSSNVVEVLQRKRGLLTNEDVETCKGGMNTWGYVGDLNDHPQLSCVYQSDDAQNEFLSNPKYGLGEDVYDDDRAAAAKK 845
LP ++SK+L+AG+FVLGIGTGVTVDSAINT+ RDLASRDAIDRNAPNP +C TYG+SAM DQRVFV+FNPF+++V+QAD KP CVLR +N+V +L R+R ++ + +V +CK MNTW YVGDL+D PQLSCVYQS+DAQNEFLSNPK G+GEDV+DDDRA A K
Sbjct: 117 LPDSVSKSLLAGIFVLGIGTGVTVDSAINTNERDLASRDAIDRNAPNPELCSTYGASAMAFDQRVFVSFNPFAVYVAQADVKPACVLRPANIVPIL-RERNMINDAEVRSCKKNMNTWAYVGDLDDMPQLSCVYQSEDAQNEFLSNPKLGIGEDVWDDDRAKATGK 281
BLAST of mRNA_E-siliculosus-1a_F_contig1008.108.1 vs. uniprot
Match: A0A7S2SJB4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SJB4_9STRA) HSP 1 Score: 245 bits (625), Expect = 4.360e-75 Identity = 119/168 (70.83%), Postives = 140/168 (83.33%), Query Frame = 3 Query: 345 LLPATLSKALIAGVFVLGIGTGVTVDSAINTDPRDLASRDAIDRNAPNPNICQTYGSSAMVVDQRVFVTFNPFSLHVSQADTKPGCVLRSSNVVEVLQRKRGLLTNEDVETCKGGMNTWGYVGDLNDHPQLSCVYQSDDAQNEFLSNPKYGLGEDVYDDDRAAAAKKS 848
L P L+ L+AGVFVLGIGTGVTVDSAINT+P+DLASRDAIDR APN +CQ YG+SAMV+DQR+FVTFNPF+++V+QADTKPGCVLRSSNVV VLQ K GLL +++ CK MNTWG+VG L+D PQLSCVY+S DAQNEFLSNPK GLGED+YD+ A K +
Sbjct: 82 LFPKQLTNYLLAGVFVLGIGTGVTVDSAINTNPKDLASRDAIDRAAPNAELCQQYGASAMVMDQRLFVTFNPFNVYVTQADTKPGCVLRSSNVVPVLQGK-GLLDRDEIAACKNNMNTWGFVGTLDDRPQLSCVYKSQDAQNEFLSNPKIGLGEDIYDNGIPGAGKNA 248
BLAST of mRNA_E-siliculosus-1a_F_contig1008.108.1 vs. uniprot
Match: A0A7S4WJP8_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4WJP8_9STRA) HSP 1 Score: 244 bits (623), Expect = 5.620e-74 Identity = 114/168 (67.86%), Postives = 142/168 (84.52%), Query Frame = 3 Query: 348 LPATLSKALIAGVFVLGIGTGVTVDSAINTDPRDLASRDAIDRNAPNPNICQTYGSSAMVVDQRVFVTFNPFSLHVSQADTKPGCVLRSSNVVEVLQRKRGLLTNEDVETCKGGMNTWGYVGDLNDHPQLSCVYQSDDAQNEFLSNPKYGLGEDVYDDDRAAAAKKSA 851
LPA++SKAL+AGVFVLGIGTGVT+DS INT+P+DLASRDA+DRNAPNP +C TYG+ AM DQRVFV+FNPF+++V+QAD KP CVLR +NVV +L R++ L+ + +V +CK MNTW +VGDL D PQLSCVY+S+DAQNEFLSNPK G+GEDV+DDDR K +A
Sbjct: 123 LPASVSKALLAGVFVLGIGTGVTIDSQINTNPKDLASRDAVDRNAPNPELCTTYGAPAMAFDQRVFVSFNPFNVYVAQADVKPACVLRPANVVPIL-REKNLINDAEVRSCKQNMNTWAFVGDLQDMPQLSCVYKSEDAQNEFLSNPKLGIGEDVWDDDREKMMKNAA 289
BLAST of mRNA_E-siliculosus-1a_F_contig1008.108.1 vs. uniprot
Match: A0A7S4I7G3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I7G3_9STRA) HSP 1 Score: 243 bits (620), Expect = 1.480e-73 Identity = 115/192 (59.90%), Postives = 150/192 (78.12%), Query Frame = 3 Query: 348 LPATLSKALIAGVFVLGIGTGVTVDSAINTDPRDLASRDAIDRNAPNPNICQTYGSSAMVVDQRVFVTFNPFSLHVSQADTKPGCVLRSSNVVEVLQRKRGLLTNEDVETCKGGMNTWGYVGDLNDHPQLSCVYQSDDAQNEFLSNPKYGLGEDVYDDDRAAAAKKSAGSEPANGPRVMSGTVQTVVTDRAK 923
LP ++SKAL+AG+FVLGIG GV ++S +NT P+DLASRDAID+NAPNP +C YG+SAM DQRVFV+FNPF+++V+QAD KP CVLR SNVV+VL ++R L+ + +V +CK +NTW +VGDL+ PQ+SCVYQSDDAQNEFLSNPK G+GEDVYDDDRAA +K + G ++ SG + + A+
Sbjct: 117 LPDSVSKALLAGIFVLGIGAGVAIESQVNTSPKDLASRDAIDKNAPNPTLCAQYGASAMAFDQRVFVSFNPFNVYVAQADVKPACVLRQSNVVQVL-KERNLINDNEVRSCKQKVNTWAFVGDLDSMPQISCVYQSDDAQNEFLSNPKLGIGEDVYDDDRAALERKKS-----TGKQIKSGMTEAQMKKMAQ 302
BLAST of mRNA_E-siliculosus-1a_F_contig1008.108.1 vs. uniprot
Match: W7TER9_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TER9_9STRA) HSP 1 Score: 236 bits (601), Expect = 3.100e-71 Identity = 111/158 (70.25%), Postives = 133/158 (84.18%), Query Frame = 3 Query: 348 LPATLSKALIAGVFVLGIGTGVTVDSAINTDPRDLASRDAIDRNAPNPNICQTYGSSAMVVDQRVFVTFNPFSLHVSQADTKPGCVLRSSNVVEVLQRKRGLLTNEDVETCKGGMNTWGYVGDLNDHPQLSCVYQSDDAQNEFLS-NPKYGLGEDVYD 818
+P LS AL+ G FVLG+GTGVTVDSA+NT+ +DLASRDAID+NAPNP CQ YG+S +V+D R+FV+FNPF ++V+QAD KPGCVLR++NVV+ LQ RGLLT+E+V CK G NTW YVGD+ND PQLSCVYQSDDAQNEFL NPK G+GEDVYD
Sbjct: 115 IPQGLSAALLLGTFVLGVGTGVTVDSAVNTNKKDLASRDAIDKNAPNPKFCQRYGASTLVLDNRIFVSFNPFDVYVTQADVKPGCVLRAANVVQALQG-RGLLTDEEVNVCKNGNNTWAYVGDINDKPQLSCVYQSDDAQNEFLEKNPKLGVGEDVYD 271
BLAST of mRNA_E-siliculosus-1a_F_contig1008.108.1 vs. uniprot
Match: A0A7R9WZG6_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WZG6_9STRA) HSP 1 Score: 234 bits (597), Expect = 4.130e-71 Identity = 110/161 (68.32%), Postives = 138/161 (85.71%), Query Frame = 3 Query: 348 LPATLSKALIAGVFVLGIGTGVTVDSAINTDPRDLASRDAIDRNAPNPNICQTYGSSAMVVDQRVFVTFNPFSLHVSQADTKPGCVLRSSNVVEVLQRKRGLLTNEDVETCKGGMNTWGYVGDLNDHPQLSCVYQSDDAQNEFLSNPKYGLGEDVYDDDRA 830
LPA++S+A++AGVFVLGIG GVT+DSAINT+PRDLASRDAID+ APN ++C YG+SAM DQRVFV+FNPF+++V+QAD KP CVLR SNVV +L ++R L+ +++V +CK MNTW +VG+L D PQLSCVY+S DAQNEFLSNPKYG+GED DDDRA
Sbjct: 47 LPASVSQAVLAGVFVLGIGLGVTIDSAINTNPRDLASRDAIDQAAPNSSLCANYGASAMAFDQRVFVSFNPFNVYVAQADVKPACVLRPSNVVPIL-KQRNLINDDEVRSCKANMNTWAFVGNLGDAPQLSCVYKSADAQNEFLSNPKYGIGEDYLDDDRA 206 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1008.108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1008.108.1 >prot_E-siliculosus-1a_F_contig1008.108.1 ID=prot_E-siliculosus-1a_F_contig1008.108.1|Name=mRNA_E-siliculosus-1a_F_contig1008.108.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=309bp MRYSGATLAAGGMFLALIVQQTAGFLCPTTINPGSSAAHRAARSASPVRRback to top mRNA from alignment at E-siliculosus-1a_F_contig1008:5302..8934- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1008.108.1 ID=mRNA_E-siliculosus-1a_F_contig1008.108.1|Name=mRNA_E-siliculosus-1a_F_contig1008.108.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3633bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1008:5302..8934- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1008:5302..8934- >mRNA_E-siliculosus-1a_F_contig1008.108.1 ID=mRNA_E-siliculosus-1a_F_contig1008.108.1|Name=mRNA_E-siliculosus-1a_F_contig1008.108.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1854bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1008:5302..8934- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |