mRNA_E-siliculosus-1a_F_contig1008.108.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1008.108.1
Unique NamemRNA_E-siliculosus-1a_F_contig1008.108.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1008.108.1 vs. uniprot
Match: A0A6H5L2L5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2L5_9PHAE)

HSP 1 Score: 464 bits (1195), Expect = 2.400e-160
Identity = 289/312 (92.63%), Postives = 292/312 (93.59%), Query Frame = 3 
Query:    3 MRYSGATLAAGGMFLALIVQQTAGFLCPTTINPGSSAAHRA----ARSASPVRRQNDRVEQEGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAVAPQRRKRPKVPLLPATLSKALIAGVFVLGIGTGVTVDSAINTDPRDLASRDAIDRNAPNPNICQTYGSSAMVVDQRVFVTFNPFSLHVSQADTKPGCVLRSSNVVEVLQRKRGLLTNEDVETCKGGMNTWGYVGDLNDHPQLSCVYQSDDAQNEFLSNPKYGLGEDVYDDDRAAAAKKSAGSEPANGPRVMSGTVQTVVTDRAKM 926
            MRYSGATLAAGGMFLALIVQ TAGFLCPTTINP SSAAHRA    + SASPVRRQN RV++EGR  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        KRPKVPLLP TLSKALIAGVFVLGIGTGVTVDSAINTDPRDLASRDAIDRNAPNPNICQTYGSSAMVVDQRVFVTFNPFSLHVSQADTKPGCVLRSSNVVEVLQRKRGLLTNEDVE CKGGMNTWGYVGDLNDHPQLSCVYQSDDAQNEFLSNPKYGLGEDVYDDDRAAAAKKSAGSEPANGPRVMSGTVQTVVTDRAKM
Sbjct:    1 MRYSGATLAAGGMFLALIVQ-TAGFLCPTTINPHSSAAHRAVGSGSTSASPVRRQNGRVKREGRRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXKRPKVPLLPTTLSKALIAGVFVLGIGTGVTVDSAINTDPRDLASRDAIDRNAPNPNICQTYGSSAMVVDQRVFVTFNPFSLHVSQADTKPGCVLRSSNVVEVLQRKRGLLTNEDVEKCKGGMNTWGYVGDLNDHPQLSCVYQSDDAQNEFLSNPKYGLGEDVYDDDRAAAAKKSAGSEPANGPRVMSGTVQTVVTDRAKM 310
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1008.108.1 vs. uniprot
Match: A0A836CMQ9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMQ9_9STRA)

HSP 1 Score: 271 bits (693), Expect = 1.330e-84
Identity = 138/197 (70.05%), Postives = 159/197 (80.71%), Query Frame = 3 
Query:  324 RKRPKVPLLPATLSKALIAGVFVLGIGTGVTVDSAINTDPRDLASRDAIDRNAPNPNICQTYGSSAMVVDQRVFVTFNPFSLHVSQADTKPGCVLRSSNVVEVLQRKRGLLTNEDVETCKGGMNTWGYVGDLNDHPQLSCVYQSDDAQNEFLSNPKYGLGEDVYDDDRAA-----AAKKSAGSEPANGPRVMSGTVQ 899
            R+R K       + KAL+AG+FVLGIGTGVTVDSAINT+P+DLASRDAIDRNAPNP ICQTYGSSAMVVD+RVFVTFNPFS++V+QAD KPGCVLR SN V+VL+R R L+ + +VETCKGGMNTW +VGDLN  PQLSCVYQSDDAQNEF+S+PK GLGEDVYDDDRAA     AA+  A S    GP+     V+
Sbjct:  101 RRRDKGFFNSVKIPKALLAGIFVLGIGTGVTVDSAINTNPKDLASRDAIDRNAPNPGICQTYGSSAMVVDERVFVTFNPFSIYVAQADVKPGCVLRQSNFVQVLKR-RNLINDAEVETCKGGMNTWAFVGDLNGKPQLSCVYQSDDAQNEFVSDPKIGLGEDVYDDDRAAEQAARAARAVAASATKPGPQAQGMQVE 296
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BLAST of mRNA_E-siliculosus-1a_F_contig1008.108.1 vs. uniprot
Match: A0A7R9WGK2_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WGK2_9STRA)

HSP 1 Score: 249 bits (636), Expect = 2.300e-77
Identity = 118/168 (70.24%), Postives = 144/168 (85.71%), Query Frame = 3 
Query:  348 LPATLSKALIAGVFVLGIGTGVTVDSAINTDPRDLASRDAIDRNAPNPNICQTYGSSAMVVDQRVFVTFNPFSLHVSQADTKPGCVLRSSNVVEVLQRKRGLLTNEDVETCKGGMNTWGYVGDLNDHPQLSCVYQSDDAQNEFLSNPKYGLGEDVYDDDRAAAAKKSA 851
            LP ++SKAL+AG+FVLGIGTGVT++S INT P+DLASRDAIDRNAPNP +C  YG+SAM  DQRVFV+FNPF+++V+QAD KP CVLR SNVV+VL R+R L+ + +V TCK  +NTW +VGDL++ PQLSCVYQSDDAQNEFLSNPK G+GEDVYDDDRA+  +K A
Sbjct:   16 LPESVSKALLAGIFVLGIGTGVTIESQINTSPKDLASRDAIDRNAPNPTLCAQYGASAMAFDQRVFVSFNPFNVYVAQADVKPACVLRQSNVVQVL-RERKLINDNEVRTCKQKVNTWAFVGDLDNMPQLSCVYQSDDAQNEFLSNPKLGIGEDVYDDDRASLERKRA 182
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1008.108.1 vs. uniprot
Match: A0A7S3PTW4_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PTW4_9STRA)

HSP 1 Score: 250 bits (639), Expect = 2.520e-76
Identity = 121/177 (68.36%), Postives = 149/177 (84.18%), Query Frame = 3 
Query:  348 LPATLSKALIAGVFVLGIGTGVTVDSAINTDPRDLASRDAIDRNAPNPNICQTYGSSAMVVDQRVFVTFNPFSLHVSQADTKPGCVLRSSNVVEVLQRKRGLLTNEDVETCKGGMNTWGYVGDLNDHPQLSCVYQSDDAQNEFLSNPKYGLGEDVYDDDRAA--AAKKSAGSEPANG 872
            LP ++S AL+AGVFVLGIGTGVTVDS INT P+DLASRDA+D+ APNP +C TYG+SAM  DQRVFV+FNPF+++V+QAD KP CVLR+SNVV VLQ  RGL+  ++V +CK  MNTW +VGDLND+PQLSCVY+S+DAQNEFLS+PKYG+GEDV+DDDR A  AA+K +  +  NG
Sbjct:  111 LPESVSTALLAGVFVLGIGTGVTVDSQINTSPKDLASRDAVDQAAPNPRLCSTYGASAMAFDQRVFVSFNPFNVYVAQADVKPACVLRASNVVPVLQ-DRGLINGKEVRSCKQNMNTWAFVGDLNDYPQLSCVYRSEDAQNEFLSDPKYGIGEDVWDDDRVAIEAARKGSVKKVKNG 286
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BLAST of mRNA_E-siliculosus-1a_F_contig1008.108.1 vs. uniprot
Match: A0A7S2UF23_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UF23_9STRA)

HSP 1 Score: 248 bits (634), Expect = 1.100e-75
Identity = 117/166 (70.48%), Postives = 143/166 (86.14%), Query Frame = 3 
Query:  348 LPATLSKALIAGVFVLGIGTGVTVDSAINTDPRDLASRDAIDRNAPNPNICQTYGSSAMVVDQRVFVTFNPFSLHVSQADTKPGCVLRSSNVVEVLQRKRGLLTNEDVETCKGGMNTWGYVGDLNDHPQLSCVYQSDDAQNEFLSNPKYGLGEDVYDDDRAAAAKK 845
            LP ++SK+L+AG+FVLGIGTGVTVDSAINT+ RDLASRDAIDRNAPNP +C TYG+SAM  DQRVFV+FNPF+++V+QAD KP CVLR +N+V +L R+R ++ + +V +CK  MNTW YVGDL+D PQLSCVYQS+DAQNEFLSNPK G+GEDV+DDDRA A  K
Sbjct:  117 LPDSVSKSLLAGIFVLGIGTGVTVDSAINTNERDLASRDAIDRNAPNPELCSTYGASAMAFDQRVFVSFNPFAVYVAQADVKPACVLRPANIVPIL-RERNMINDAEVRSCKKNMNTWAYVGDLDDMPQLSCVYQSEDAQNEFLSNPKLGIGEDVWDDDRAKATGK 281
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1008.108.1 vs. uniprot
Match: A0A7S2SJB4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SJB4_9STRA)

HSP 1 Score: 245 bits (625), Expect = 4.360e-75
Identity = 119/168 (70.83%), Postives = 140/168 (83.33%), Query Frame = 3 
Query:  345 LLPATLSKALIAGVFVLGIGTGVTVDSAINTDPRDLASRDAIDRNAPNPNICQTYGSSAMVVDQRVFVTFNPFSLHVSQADTKPGCVLRSSNVVEVLQRKRGLLTNEDVETCKGGMNTWGYVGDLNDHPQLSCVYQSDDAQNEFLSNPKYGLGEDVYDDDRAAAAKKS 848
            L P  L+  L+AGVFVLGIGTGVTVDSAINT+P+DLASRDAIDR APN  +CQ YG+SAMV+DQR+FVTFNPF+++V+QADTKPGCVLRSSNVV VLQ K GLL  +++  CK  MNTWG+VG L+D PQLSCVY+S DAQNEFLSNPK GLGED+YD+    A K +
Sbjct:   82 LFPKQLTNYLLAGVFVLGIGTGVTVDSAINTNPKDLASRDAIDRAAPNAELCQQYGASAMVMDQRLFVTFNPFNVYVTQADTKPGCVLRSSNVVPVLQGK-GLLDRDEIAACKNNMNTWGFVGTLDDRPQLSCVYKSQDAQNEFLSNPKIGLGEDIYDNGIPGAGKNA 248
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BLAST of mRNA_E-siliculosus-1a_F_contig1008.108.1 vs. uniprot
Match: A0A7S4WJP8_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4WJP8_9STRA)

HSP 1 Score: 244 bits (623), Expect = 5.620e-74
Identity = 114/168 (67.86%), Postives = 142/168 (84.52%), Query Frame = 3 
Query:  348 LPATLSKALIAGVFVLGIGTGVTVDSAINTDPRDLASRDAIDRNAPNPNICQTYGSSAMVVDQRVFVTFNPFSLHVSQADTKPGCVLRSSNVVEVLQRKRGLLTNEDVETCKGGMNTWGYVGDLNDHPQLSCVYQSDDAQNEFLSNPKYGLGEDVYDDDRAAAAKKSA 851
            LPA++SKAL+AGVFVLGIGTGVT+DS INT+P+DLASRDA+DRNAPNP +C TYG+ AM  DQRVFV+FNPF+++V+QAD KP CVLR +NVV +L R++ L+ + +V +CK  MNTW +VGDL D PQLSCVY+S+DAQNEFLSNPK G+GEDV+DDDR    K +A
Sbjct:  123 LPASVSKALLAGVFVLGIGTGVTIDSQINTNPKDLASRDAVDRNAPNPELCTTYGAPAMAFDQRVFVSFNPFNVYVAQADVKPACVLRPANVVPIL-REKNLINDAEVRSCKQNMNTWAFVGDLQDMPQLSCVYKSEDAQNEFLSNPKLGIGEDVWDDDREKMMKNAA 289
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BLAST of mRNA_E-siliculosus-1a_F_contig1008.108.1 vs. uniprot
Match: A0A7S4I7G3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I7G3_9STRA)

HSP 1 Score: 243 bits (620), Expect = 1.480e-73
Identity = 115/192 (59.90%), Postives = 150/192 (78.12%), Query Frame = 3 
Query:  348 LPATLSKALIAGVFVLGIGTGVTVDSAINTDPRDLASRDAIDRNAPNPNICQTYGSSAMVVDQRVFVTFNPFSLHVSQADTKPGCVLRSSNVVEVLQRKRGLLTNEDVETCKGGMNTWGYVGDLNDHPQLSCVYQSDDAQNEFLSNPKYGLGEDVYDDDRAAAAKKSAGSEPANGPRVMSGTVQTVVTDRAK 923
            LP ++SKAL+AG+FVLGIG GV ++S +NT P+DLASRDAID+NAPNP +C  YG+SAM  DQRVFV+FNPF+++V+QAD KP CVLR SNVV+VL ++R L+ + +V +CK  +NTW +VGDL+  PQ+SCVYQSDDAQNEFLSNPK G+GEDVYDDDRAA  +K +      G ++ SG  +  +   A+
Sbjct:  117 LPDSVSKALLAGIFVLGIGAGVAIESQVNTSPKDLASRDAIDKNAPNPTLCAQYGASAMAFDQRVFVSFNPFNVYVAQADVKPACVLRQSNVVQVL-KERNLINDNEVRSCKQKVNTWAFVGDLDSMPQISCVYQSDDAQNEFLSNPKLGIGEDVYDDDRAALERKKS-----TGKQIKSGMTEAQMKKMAQ 302
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BLAST of mRNA_E-siliculosus-1a_F_contig1008.108.1 vs. uniprot
Match: W7TER9_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TER9_9STRA)

HSP 1 Score: 236 bits (601), Expect = 3.100e-71
Identity = 111/158 (70.25%), Postives = 133/158 (84.18%), Query Frame = 3 
Query:  348 LPATLSKALIAGVFVLGIGTGVTVDSAINTDPRDLASRDAIDRNAPNPNICQTYGSSAMVVDQRVFVTFNPFSLHVSQADTKPGCVLRSSNVVEVLQRKRGLLTNEDVETCKGGMNTWGYVGDLNDHPQLSCVYQSDDAQNEFLS-NPKYGLGEDVYD 818
            +P  LS AL+ G FVLG+GTGVTVDSA+NT+ +DLASRDAID+NAPNP  CQ YG+S +V+D R+FV+FNPF ++V+QAD KPGCVLR++NVV+ LQ  RGLLT+E+V  CK G NTW YVGD+ND PQLSCVYQSDDAQNEFL  NPK G+GEDVYD
Sbjct:  115 IPQGLSAALLLGTFVLGVGTGVTVDSAVNTNKKDLASRDAIDKNAPNPKFCQRYGASTLVLDNRIFVSFNPFDVYVTQADVKPGCVLRAANVVQALQG-RGLLTDEEVNVCKNGNNTWAYVGDINDKPQLSCVYQSDDAQNEFLEKNPKLGVGEDVYD 271
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1008.108.1 vs. uniprot
Match: A0A7R9WZG6_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WZG6_9STRA)

HSP 1 Score: 234 bits (597), Expect = 4.130e-71
Identity = 110/161 (68.32%), Postives = 138/161 (85.71%), Query Frame = 3 
Query:  348 LPATLSKALIAGVFVLGIGTGVTVDSAINTDPRDLASRDAIDRNAPNPNICQTYGSSAMVVDQRVFVTFNPFSLHVSQADTKPGCVLRSSNVVEVLQRKRGLLTNEDVETCKGGMNTWGYVGDLNDHPQLSCVYQSDDAQNEFLSNPKYGLGEDVYDDDRA 830
            LPA++S+A++AGVFVLGIG GVT+DSAINT+PRDLASRDAID+ APN ++C  YG+SAM  DQRVFV+FNPF+++V+QAD KP CVLR SNVV +L ++R L+ +++V +CK  MNTW +VG+L D PQLSCVY+S DAQNEFLSNPKYG+GED  DDDRA
Sbjct:   47 LPASVSQAVLAGVFVLGIGLGVTIDSAINTNPRDLASRDAIDQAAPNSSLCANYGASAMAFDQRVFVSFNPFNVYVAQADVKPACVLRPSNVVPIL-KQRNLINDDEVRSCKANMNTWAFVGNLGDAPQLSCVYKSADAQNEFLSNPKYGIGEDYLDDDRA 206
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1008.108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L2L5_9PHAE2.400e-16092.63Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CMQ9_9STRA1.330e-8470.05Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9WGK2_9STRA2.300e-7770.24Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S3PTW4_9STRA2.520e-7668.36Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2UF23_9STRA1.100e-7570.48Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2SJB4_9STRA4.360e-7570.83Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S4WJP8_9STRA5.620e-7467.86Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S4I7G3_9STRA1.480e-7359.90Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
W7TER9_9STRA3.100e-7170.25Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A7R9WZG6_9STRA4.130e-7168.32Hypothetical protein n=1 Tax=Craspedostauros austr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1008contigE-siliculosus-1a_F_contig1008:5302..8934 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size927
Model size1403
Exons5
Ec32 orthologEc-01_003760.1
Ec32 ortholog descriptionProtein of unknown function DUF3172
Hectar predicted targeting categorysignal peptide
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGs28NVC@1,2S1FT@2759
EggNOG free text desc.Protein of unknown function (DUF3172)
Seed eggNOG ortholog2880.D7FW84
Seed ortholog evalue3.5e-134
Seed ortholog score484.6
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927512.0167265-UTR-E-siliculosus-1a_F_contig1008:5301..57751622927512.0167265-UTR-E-siliculosus-1a_F_contig1008:5301..5775Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1008 5302..5775 -
1696318560.4397268-UTR-E-siliculosus-1a_F_contig1008:5301..57751696318560.4397268-UTR-E-siliculosus-1a_F_contig1008:5301..5775Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1008 5302..5775 -
1622927512.0895417-UTR-E-siliculosus-1a_F_contig1008:8932..89341622927512.0895417-UTR-E-siliculosus-1a_F_contig1008:8932..8934Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1008 8933..8934 -
1696318560.5123136-UTR-E-siliculosus-1a_F_contig1008:8932..89341696318560.5123136-UTR-E-siliculosus-1a_F_contig1008:8932..8934Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1008 8933..8934 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927512.030758-CDS-E-siliculosus-1a_F_contig1008:5775..59131622927512.030758-CDS-E-siliculosus-1a_F_contig1008:5775..5913Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1008 5776..5913 -
1696318560.4581258-CDS-E-siliculosus-1a_F_contig1008:5775..59131696318560.4581258-CDS-E-siliculosus-1a_F_contig1008:5775..5913Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1008 5776..5913 -
1622927512.0444155-CDS-E-siliculosus-1a_F_contig1008:6171..63811622927512.0444155-CDS-E-siliculosus-1a_F_contig1008:6171..6381Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1008 6172..6381 -
1696318560.4675143-CDS-E-siliculosus-1a_F_contig1008:6171..63811696318560.4675143-CDS-E-siliculosus-1a_F_contig1008:6171..6381Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1008 6172..6381 -
1622927512.0567946-CDS-E-siliculosus-1a_F_contig1008:6844..70571622927512.0567946-CDS-E-siliculosus-1a_F_contig1008:6844..7057Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1008 6845..7057 -
1696318560.4825516-CDS-E-siliculosus-1a_F_contig1008:6844..70571696318560.4825516-CDS-E-siliculosus-1a_F_contig1008:6844..7057Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1008 6845..7057 -
1622927512.0676281-CDS-E-siliculosus-1a_F_contig1008:7775..80811622927512.0676281-CDS-E-siliculosus-1a_F_contig1008:7775..8081Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1008 7776..8081 -
1696318560.4925854-CDS-E-siliculosus-1a_F_contig1008:7775..80811696318560.4925854-CDS-E-siliculosus-1a_F_contig1008:7775..8081Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1008 7776..8081 -
1622927512.07988-CDS-E-siliculosus-1a_F_contig1008:8872..89321622927512.07988-CDS-E-siliculosus-1a_F_contig1008:8872..8932Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1008 8873..8932 -
1696318560.5022295-CDS-E-siliculosus-1a_F_contig1008:8872..89321696318560.5022295-CDS-E-siliculosus-1a_F_contig1008:8872..8932Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1008 8873..8932 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1008.108.1prot_E-siliculosus-1a_F_contig1008.108.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1008 5776..8932 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1008.108.1

>prot_E-siliculosus-1a_F_contig1008.108.1 ID=prot_E-siliculosus-1a_F_contig1008.108.1|Name=mRNA_E-siliculosus-1a_F_contig1008.108.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=309bp
MRYSGATLAAGGMFLALIVQQTAGFLCPTTINPGSSAAHRAARSASPVRR
QNDRVEQEGRRGGGAVGGGSKHVLGARRRDDFLYDDDDDDDLFDDDLDDR
RAVAPQRRKRPKVPLLPATLSKALIAGVFVLGIGTGVTVDSAINTDPRDL
ASRDAIDRNAPNPNICQTYGSSAMVVDQRVFVTFNPFSLHVSQADTKPGC
VLRSSNVVEVLQRKRGLLTNEDVETCKGGMNTWGYVGDLNDHPQLSCVYQ
SDDAQNEFLSNPKYGLGEDVYDDDRAAAAKKSAGSEPANGPRVMSGTVQT
VVTDRAKM*
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mRNA from alignment at E-siliculosus-1a_F_contig1008:5302..8934-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1008.108.1 ID=mRNA_E-siliculosus-1a_F_contig1008.108.1|Name=mRNA_E-siliculosus-1a_F_contig1008.108.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3633bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1008:5302..8934- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGATGAGGTACTCAGGGGCAACACTCGCAGCTGGCGGGATGTTCCTGGCA
TTGATAGTGCAGGTGATGCTTGGCTTTGGTGTATTTTGTCCTCTTCTCGA
ACACTGCCTGTTGTCGGTCTAAACATGGCGTTGTGCAGATGAGGTTGAAT
CCGCCTCGTGCATGCTCCTCCCCAATCCTCAGCGTCGACTGAGTTGTCCG
AATACCAAGTACTCCTCAAGATGACAACGGCAGCACCCCATCACCAAACC
CCTTCGGGCTCCGCCACTGCTGCCGTTCCTCGTTTTGGTGACCCATTTTA
TACCTGGAAACGGGGCTGCTACTGCTGTAGTGCCAGTTGTGCCTGCCACA
CACGTTGACCATGAACAGACACCACAGGGGGACTGCTACATTGCTGTAGT
CGCAGCGTTTACGACACACCGCACCCATATTTGTATGTTTGCTTGCACCT
CATGGCTCATGTCTGCAGCAGCTTTTCGCACGTGGCCCACCGAATGCCAT
GAGTCTTGCTCGTCTTGCATGTCGGTGCAATATTATAGTCTAAATGAAGA
ACAGCACCATCATGACACCCATGGTGCAAGTGTAGAGAAGCTACCAATTG
TAGTACACAACGAGAGAGAGAGAGAGAGAGTGGGAGATGCACCCAATGGT
TGAAATGTCTGTTTTACTGCTTGTATCTGTTGCCGGTACACAACATGGTG
TCATATTTGCTGCCTGTATTCGCGTCGGCGGTGTGTGAAGTGGTTGGGAA
CAAAGAACCACCACACCAAACTCACGCTCGCCCGAGCTGTTAGACACGTC
GTCACCACAAAAGCACACCGTTCGTTTGCGTGCATGTTCCACATCCCCTC
CAGCAGACGGCAGGGTTCCTGTGCCCGACTACGATCAACCCTGGCTCCAG
CGCGGCGCATCGAGCTGCCAGGAGTGCCTCGCCCGTCAGAAGGCAAAACG
ACCGGGTGGAACAGGAAGGGCGAAGGGGTGGTGGTGCAGTCGGCGGGGGG
TCGAAGCACGTTCTCGGCGCAAGACGACGAGACGACTTCTTGTACGACGA
CGACGACGATGACGATCTGTTCGATGATGACCTTGACGACAGGCGAGCTG
TCGCTCCGCAGAGGAGAAAGAGGCCCAAGGTGCCGCTCTTGCCCGCGACG
CTCAGCAAGGTTAGTGGTTGTACATGGCGGTGCGTACAGCAGTAGAGATC
CCTGTTGAGCGCCTGAGCACCGGTTGAATAGTGCCGTTGCCACGGTATGG
TGCCGGTGTTTTCGGCGGGCACACGCTCAGTTTCCCAGTCATTCTCAATA
CTTTGAAGAGTGCCGGCCCGGAATTGTGCCGCTGAGTTTTCTGGGCACAT
ACCGGCACTAACAGGGACCTCTTCTGTACAAGCCTGCCGGTGTCGCCCTA
TTAGTAGTCTGGATCCAAAGAGGTTTTGTGGTGGTTGGGGTTGAAAGTGC
TCTGCGTGCGGTTGGAGTGTTTTCCTTTTGGATGGTGGAAGCTTGCTATC
TTGTCGCCACTGTATACACCAATGTCTTTTGTCCGCAAATTGTTTCAGCG
AGTGTGTGCGGCAGCGCTGCCATCGTCTCGTGCCGACGGCCTCGTGTGCG
CGGCTGTGCGCACAGCAGTAGTAACTTTAACCTGCGGGCATGTGCACCAG
GTCCTTGCTTTGGTCAGTTGTTGATCACCCTTGTTCCGAACTAAACAGCA
CAGTATGGCAAAGCTGTGCTCATCTTTTGAGGACATTCGTGGCCAATCCG
ATCAACTTACCTATCTGTCCCCTGTACAACAATCGCACACGCTTCGTTGA
ACTTTCCTACGCTCCTGGGATCTATACGCACCGAGAACCATGACTCGTGC
CTCGCCGTTGCGATTCACTCCGTTCAGGCTCTTATAGCGGGCGTTTTTGT
TCTGGGCATCGGCACCGGGGTGACGGTAGACTCGGCAATCAACACCGACC
CCAGAGATCTGGCGAGCCGCGACGCCATCGACCGCAACGCGCCCAACCCC
AACATCTGTCAGACCTACGGGTCTAGTGCCATGGTGGTGGACCAGCGCGT
GTTCGTGACCTTCAACCCGTTCAGCTTGCACGTCTCGCAGGTATGGGTGG
TATGATACTTGTCCACGGTTGAGGGTACGCTTGAACTGCTTTCGTTCGTG
GCATGGCCATGGTAAGGAATGTGTACTTGATTCCCATTCTGGCTGTGTCT
TCTTGGTGAGGTCAACAAACCGGTGCCGTGGAAATCATTCCGCGTCCCCC
CCCTGTACGATCCAGGCTCTAATGGTCTGCATGTCTGTTATGCGAAGGCT
TTGCTGCGATGTACCGTGAGACGGGCGGGCAGAGGAAAAATTGTCGCACG
ACGCTTATTGCTACCCCAGATTTTTGCACCTTTCTCGACAAGGACTGTCA
CCGCTTGTGCTAGAGGATGAGGGTATTTTCGTGACTGGGGCATGTATGTA
TATGGCAACTCGTGTTACGGTTGATGATCCTCCCGTCGCCCGCCGTCCCC
TACCGCGTACCCTCTGTGTACCCATCACCCTCTGTGTACCCATCTTCCCG
AAGGCGGACACCAAGCCGGGTTGCGTGCTGCGATCGTCCAACGTGGTGGA
GGTTCTGCAGCGTAAGCGAGGGCTGCTGACCAACGAGGACGTGGAGACGT
GCAAGGGGGGCATGAACACGTGGGGCTACGTGGGAGACCTGAACGACCAC
CCGCAGCTGTCCTGCGTATACCAGAGCGACGACGCGCAGAACGAGTTCCT
CTCCAATCCTAAGGTACGGCATAATTTTTTCATGGGTATTCTATCTTGGG
GTCTAACGCTGAAACTCTTCTGCCGTGAAGGAAAGCCAGCAGAACGGAGC
TTTGGGGCTAGGCCTCAAGCTGAAACTCTTCGGCAGCGAAGGAAGCCAAC
AGAAGGGAGGAAAAATCATTCTCCGCACCCGCTCTGAAGTTGGCCGTTGA
TTTTATTGCTAAACGCTAACTTGCGAAATCGCTGCCGACCGCCCCTGTTT
GCTTTTTTTTGTCGCCCCCAGTACGGATTGGGCGAGGACGTGTACGACGA
TGACCGGGCAGCCGCGGCAAAGAAGAGCGCCGGGAGCGAGCCCGCGAACG
GCCCCCGCGTCATGTCCGGGACTGTGCAGACCGTTGTGACGGACAGGGCA
AAAATGTAGTGTCTTCACTTGTTATAGTTGGCGGGTTTCCTTCCAATCAC
GCTTGGAAATTGTGCAATGGTAGTAGAGGTGTTTCAGTATTTTTTTGGGG
AGGGTCGAGTCGCTTGTGCTTGGACTCCTGAGGCCGTAGCAATACGGGGT
TGCAAAACCGGTACTGGAGGGAGTGATGAGGTCCTAGCTGTTGTCAAGAC
GTTGGTGACACGTGTTGACGTACTGTACAGTAGCAGTAGGTGTGTCCATG
CTTGTTGCTGTCATGAAAGCTTTGCCGATGGCTACGTTTCACCCTGGGTA
AGAATTTTTTTTTCTGTCGTTGACATTTGTCTTAGACACTCCACGAACAA
GCAGCAGCACCCTGTACTCCGATCGCATATTGCGTAGCTCGGGGTCGAAG
TCACTGCTGTGAAATACTTCACACTTTGCAGACGACTTGTGCCTACCTTT
TACGAGTTATGTTTTGGTCCTGCCCTGTATGTC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1008:5302..8934-

>mRNA_E-siliculosus-1a_F_contig1008.108.1 ID=mRNA_E-siliculosus-1a_F_contig1008.108.1|Name=mRNA_E-siliculosus-1a_F_contig1008.108.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1854bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1008:5302..8934- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGGTACTCAGGGGCAACACTCGCAGCTGGCGGGATGTTCCTGGCATT
GATAGTGCAGATGAGGTACTCAGGGGCAACACTCGCAGCTGGCGGGATGT
TCCTGGCATTGATAGTGCAGCAGACGGCAGGGTTCCTGTGCCCGACTACG
ATCAACCCTGGCTCCAGCGCGGCGCATCGAGCTGCCAGGAGTGCCTCGCC
CGTCAGAAGGCAAAACGACCGGGTGGAACAGGAAGGGCGAAGGGGTGGTG
GTGCAGTCGGCGGGGGGTCGAAGCACGTTCTCGGCGCAAGACGACGAGAC
GACTTCTTGTACGACGACGACGACGATGACGATCTGTTCGATGATGACCT
TGACGACAGGCGAGCTGTCGCTCCGCAGAGGAGAAAGAGGCCCAAGGTGC
CGCTCTTGCCCGCGACGCTCAGCAAGCAGACGGCAGGGTTCCTGTGCCCG
ACTACGATCAACCCTGGCTCCAGCGCGGCGCATCGAGCTGCCAGGAGTGC
CTCGCCCGTCAGAAGGCAAAACGACCGGGTGGAACAGGAAGGGCGAAGGG
GTGGTGGTGCAGTCGGCGGGGGGTCGAAGCACGTTCTCGGCGCAAGACGA
CGAGACGACTTCTTGTACGACGACGACGACGATGACGATCTGTTCGATGA
TGACCTTGACGACAGGCGAGCTGTCGCTCCGCAGAGGAGAAAGAGGCCCA
AGGTGCCGCTCTTGCCCGCGACGCTCAGCAAGGCTCTTATAGCGGGCGTT
TTTGTTCTGGGCATCGGCACCGGGGTGACGGTAGACTCGGCAATCAACAC
CGACCCCAGAGATCTGGCGAGCCGCGACGCCATCGACCGCAACGCGCCCA
ACCCCAACATCTGTCAGACCTACGGGTCTAGTGCCATGGTGGTGGACCAG
CGCGTGTTCGTGACCTTCAACCCGTTCAGCTTGCACGTCTCGCAGGCTCT
TATAGCGGGCGTTTTTGTTCTGGGCATCGGCACCGGGGTGACGGTAGACT
CGGCAATCAACACCGACCCCAGAGATCTGGCGAGCCGCGACGCCATCGAC
CGCAACGCGCCCAACCCCAACATCTGTCAGACCTACGGGTCTAGTGCCAT
GGTGGTGGACCAGCGCGTGTTCGTGACCTTCAACCCGTTCAGCTTGCACG
TCTCGCAGGCGGACACCAAGCCGGGTTGCGTGCTGCGATCGTCCAACGTG
GTGGAGGTTCTGCAGCGTAAGCGAGGGCTGCTGACCAACGAGGACGTGGA
GACGTGCAAGGGGGGCATGAACACGTGGGGCTACGTGGGAGACCTGAACG
ACCACCCGCAGCTGTCCTGCGTATACCAGAGCGACGACGCGCAGAACGAG
TTCCTCTCCAATCCTAAGGCGGACACCAAGCCGGGTTGCGTGCTGCGATC
GTCCAACGTGGTGGAGGTTCTGCAGCGTAAGCGAGGGCTGCTGACCAACG
AGGACGTGGAGACGTGCAAGGGGGGCATGAACACGTGGGGCTACGTGGGA
GACCTGAACGACCACCCGCAGCTGTCCTGCGTATACCAGAGCGACGACGC
GCAGAACGAGTTCCTCTCCAATCCTAAGTACGGATTGGGCGAGGACGTGT
ACGACGATGACCGGGCAGCCGCGGCAAAGAAGAGCGCCGGGAGCGAGCCC
GCGAACGGCCCCCGCGTCATGTCCGGGACTGTGCAGACCGTTGTGACGGA
CAGGGCAAAAATGTAGTACGGATTGGGCGAGGACGTGTACGACGATGACC
GGGCAGCCGCGGCAAAGAAGAGCGCCGGGAGCGAGCCCGCGAACGGCCCC
CGCGTCATGTCCGGGACTGTGCAGACCGTTGTGACGGACAGGGCAAAAAT
GTAG
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