Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10067.104.1 vs. uniprot
Match:
D7FU50_ECTSI (CBF domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU50_ECTSI)
HSP 1 Score: 134 bits (337), Expect = 9.460e-35
Identity = 67/71 (94.37%), Postives = 68/71 (95.77%), Query Frame = 1
Query: 37 RKRHQAFGDAWLACLRLPLPPALYRRVLLFLPGNVIPYMPSPVRLADFLTAAYGLGGVRSVLALDALFLLM 249
R +AFGDAWLACLRLPLPPALYRRVLLFLPGNVIPYMPSPVRLADFLTAAYGLGGVRSVLALDALFLLM
Sbjct: 491 RYHKKAFGDAWLACLRLPLPPALYRRVLLFLPGNVIPYMPSPVRLADFLTAAYGLGGVRSVLALDALFLLM 561
BLAST of mRNA_E-siliculosus-1a_F_contig10067.104.1 vs. uniprot
Match:
A0A150GZC0_GONPE (CBF domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GZC0_GONPE)
HSP 1 Score: 81.3 bits (199), Expect = 4.140e-16
Identity = 46/83 (55.42%), Postives = 57/83 (68.67%), Query Frame = 1
Query: 1 PPPRFVWDACPKRKRHQAFGDAWLACLRLPLPPALYRRVLLFLPGNVIPYMPSPVRLADFLTAAYGLGGVRSVLALDALFLLM 249
P R W A PK ++ + FGDAWLA L LPLPP + R LL LPG+VIP +P+PVRLADFLT G G+ +LAL +FLL+
Sbjct: 314 PARRAQW-ANPKMQK-RLFGDAWLALLSLPLPPDVLRGALLRLPGSVIPALPAPVRLADFLTHCLGRSGLTGMLALHGIFLLV 394
BLAST of mRNA_E-siliculosus-1a_F_contig10067.104.1 vs. uniprot
Match:
A0A7S0YD13_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Polytomella parva TaxID=51329 RepID=A0A7S0YD13_9CHLO)
HSP 1 Score: 78.2 bits (191), Expect = 1.620e-15
Identity = 41/82 (50.00%), Postives = 53/82 (64.63%), Query Frame = 1
Query: 4 PPRFVWDACPKRKRHQAFGDAWLACLRLPLPPALYRRVLLFLPGNVIPYMPSPVRLADFLTAAYGLGGVRSVLALDALFLLM 249
P + W +KR AFGDAWLACLRLPLP A+ RR LL LP +IP++ P++L+D LT GG+ +LAL LF L+
Sbjct: 78 PTKATWLNVKNQKR--AFGDAWLACLRLPLPSAVLRRALLLLPTRIIPHLLQPLQLSDLLTFLLNRGGLVGILALHGLFQLV 157
BLAST of mRNA_E-siliculosus-1a_F_contig10067.104.1 vs. uniprot
Match:
A0A0U9HMF3_KLENI (CBF domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A0U9HMF3_KLENI)
HSP 1 Score: 77.8 bits (190), Expect = 6.870e-15
Identity = 41/77 (53.25%), Postives = 54/77 (70.13%), Query Frame = 1
Query: 19 WDACPKRKRHQAFGDAWLACLRLPLPPALYRRVLLFLPGNVIPYMPSPVRLADFLTAAYGLGGVRSVLALDALFLLM 249
W KRKR A D WLA L+LPLP Y++VL+ L G ++P MP+PV L+DFLT +Y LGGV SV++LD L+ L+
Sbjct: 240 WTDPKKRKRVAA--DCWLAMLKLPLPVDAYKKVLVKLRGTILPLMPNPVLLSDFLTDSYNLGGVVSVMSLDGLYTLI 314
BLAST of mRNA_E-siliculosus-1a_F_contig10067.104.1 vs. uniprot
Match:
A0A1Z5JIV6_FISSO (U3 small nucleolar RNA-associated protein 19 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JIV6_FISSO)
HSP 1 Score: 77.0 bits (188), Expect = 1.260e-14
Identity = 38/66 (57.58%), Postives = 47/66 (71.21%), Query Frame = 1
Query: 52 AFGDAWLACLRLPLPPALYRRVLLFLPGNVIPYMPSPVRLADFLTAAYGLGGVRSVLALDALFLLM 249
A+ AWLA L+L LPP ++ L FLPGNV+P +P P+R +DF AY GGV SVLALD LFLL+
Sbjct: 271 AWSKAWLAMLKLDLPPIALKKALRFLPGNVLPLVPHPLRFSDFFMEAYNHGGVVSVLALDGLFLLI 336
BLAST of mRNA_E-siliculosus-1a_F_contig10067.104.1 vs. uniprot
Match:
A0A835YPS8_9STRA (CBF/Mak21 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPS8_9STRA)
HSP 1 Score: 73.9 bits (180), Expect = 1.560e-13
Identity = 34/58 (58.62%), Postives = 42/58 (72.41%), Query Frame = 1
Query: 37 RKRHQAFGDAWLACLRLPLPPALYRRVLLFLPGNVIPYMPSPVRLADFLTAAYGLGGV 210
R +AF DAW+ACL LPLPP LYR VLL+LP V+P M +P++LADF T Y GG+
Sbjct: 393 RYHRKAFADAWVACLALPLPPPLYREVLLWLPQKVMPEMGAPLKLADFFTQGYRQGGM 450
BLAST of mRNA_E-siliculosus-1a_F_contig10067.104.1 vs. uniprot
Match:
A0A226N954_CALSU (CBF domain-containing protein n=1 Tax=Callipepla squamata TaxID=9009 RepID=A0A226N954_CALSU)
HSP 1 Score: 72.8 bits (177), Expect = 3.440e-13
Identity = 36/80 (45.00%), Postives = 50/80 (62.50%), Query Frame = 1
Query: 10 RFVWDACPKRKRHQAFGDAWLACLRLPLPPALYRRVLLFLPGNVIPYMPSPVRLADFLTAAYGLGGVRSVLALDALFLLM 249
R W + QAF WL L+ LP LY++VL+ L +++PYM P + DFLTAAYG+GG S+LAL+ LF+L+
Sbjct: 115 REEWKVSKLQAHKQAFERMWLTFLKHQLPSGLYKKVLVILHDSILPYMNEPTLMIDFLTAAYGVGGAISLLALNGLFILI 194
BLAST of mRNA_E-siliculosus-1a_F_contig10067.104.1 vs. uniprot
Match:
UPI0014259BA4 (nucleolar complex protein 4 homolog B-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014259BA4)
HSP 1 Score: 72.8 bits (177), Expect = 3.470e-13
Identity = 35/71 (49.30%), Postives = 52/71 (73.24%), Query Frame = 1
Query: 37 RKRHQAFGDAWLACLRLPLPPALYRRVLLFLPGNVIPYMPSPVRLADFLTAAYGLGGVRSVLALDALFLLM 249
+++ +AF +AWL+ L L LP +Y++VL + +IP M SPV L DFLTA+Y +GG S+LAL+A+F+LM
Sbjct: 248 KEQRKAFSNAWLSFLLLSLPLHVYKKVLFMMHDKIIPNMSSPVMLTDFLTASYNIGGAISLLALNAIFILM 318
BLAST of mRNA_E-siliculosus-1a_F_contig10067.104.1 vs. uniprot
Match:
UPI001425A872 (LOW QUALITY PROTEIN: nucleolar complex protein 4 homolog B-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI001425A872)
HSP 1 Score: 72.8 bits (177), Expect = 3.870e-13
Identity = 35/71 (49.30%), Postives = 52/71 (73.24%), Query Frame = 1
Query: 37 RKRHQAFGDAWLACLRLPLPPALYRRVLLFLPGNVIPYMPSPVRLADFLTAAYGLGGVRSVLALDALFLLM 249
+++ +AF +AWL+ L L LP +Y++VL + +IP M SPV L DFLTA+Y +GG S+LAL+A+F+LM
Sbjct: 248 KEQRKAFSNAWLSFLLLSLPLHVYKKVLFMMHDKIIPNMSSPVMLTDFLTASYNIGGAISLLALNAIFILM 318
BLAST of mRNA_E-siliculosus-1a_F_contig10067.104.1 vs. uniprot
Match:
A0A7S1CDG6_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CDG6_9STRA)
HSP 1 Score: 72.8 bits (177), Expect = 3.910e-13
Identity = 36/70 (51.43%), Postives = 50/70 (71.43%), Query Frame = 1
Query: 40 KRHQAFGDAWLACLRLPLPPALYRRVLLFLPGNVIPYMPSPVRLADFLTAAYGLGGVRSVLALDALFLLM 249
K +AF DAWLA +R PLPP ++R+ LL LP +IP+M P+ L DFLT +Y GGV ++LAL L++L+
Sbjct: 242 KLRRAFEDAWLAMMRRPLPPDVFRKTLLLLPKRIIPHMLHPLLLCDFLTDSYDEGGVVALLALHGLWVLI 311
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10067.104.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90 )
Total hits: 25
0 1 Expect = 9.46e-35 / Id = 94.37 Expect = 4.14e-16 / Id = 55.42 Expect = 1.62e-15 / Id = 50.00 Expect = 6.87e-15 / Id = 53.25 Expect = 1.26e-14 / Id = 57.58 Expect = 1.56e-13 / Id = 58.62 Expect = 3.44e-13 / Id = 45.00 Expect = 3.47e-13 / Id = 49.30 Expect = 3.87e-13 / Id = 49.30 Expect = 3.91e-13 / Id = 51.43 Sequence D7FU50_ECTSI A0A150GZC0_GONPE A0A7S0YD13_9CHLO A0A0U9HMF3_KLENI A0A1Z5JIV6_FISSO A0A835YPS8_9STRA A0A226N954_CALSU UPI0014259BA4 UPI001425A872 A0A7S1CDG6_9STRA Pages
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Start 0 Stop 0 Cds size 249 Model size 249 Exons 1 Hectar predicted targeting category other localisation BRITE ko00000,ko00001,ko01000,ko01001,ko03009 Best eggNOG OG NA|NA|NA Best tax level Eukaryota COG Functional cat. U EC 2.7.11.1 EggNOG OGs KOG2154@1,KOG2154@2759 EggNOG free text desc. maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) GOs GO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0000981,GO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006355,GO:0006357,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0016072,GO:0019219,GO:0019222,GO:0022613,GO:0030490,GO:0030684,GO:0030686,GO:0030688,GO:0030689,GO:0030692,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140110,GO:1901360,GO:1903506,GO:1990904,GO:2000112,GO:2001141 KEGG Pathway ko04113,ko04138,ko04213,map04113,map04138,map04213 KEGG ko ko:K12767,ko:K14771 Preferred name NOC4L Seed eggNOG ortholog 2880.D7FU50 Seed ortholog evalue 2.4e-29 Seed ortholog score 134.4 Taxonomic scope Eukaryota
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927511.3891318-CDS-E-siliculosus-1a_F_contig10067:2382..2631 1622927511.3891318-CDS-E-siliculosus-1a_F_contig10067:2382..2631 Ectocarpus siliculosus Ec863f_EcPH12_90f female CDS E-siliculosus-1a_F_contig10067 2383..2631 - 1696318559.8162773-CDS-E-siliculosus-1a_F_contig10067:2382..2631 1696318559.8162773-CDS-E-siliculosus-1a_F_contig10067:2382..2631 Ectocarpus siliculosus Ec863f_EcPH12_90f female CDS E-siliculosus-1a_F_contig10067 2383..2631 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10067.104.1
>prot_E-siliculosus-1a_F_contig10067.104.1 ID=prot_E-siliculosus-1a_F_contig10067.104.1|Name=mRNA_E-siliculosus-1a_F_contig10067.104.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=83bp
PPPRFVWDACPKRKRHQAFGDAWLACLRLPLPPALYRRVLLFLPGNVIPY back to top mRNA from alignment at E-siliculosus-1a_F_contig10067:2383..2631-
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10067.104.1 ID=mRNA_E-siliculosus-1a_F_contig10067.104.1|Name=mRNA_E-siliculosus-1a_F_contig10067.104.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=249bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10067:2383..2631- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)CCCCCCCCCCGCTTCGTCTGGGATGCCTGCCCGAAACGAAAACGACACCA
GGCGTTCGGCGACGCGTGGCTCGCCTGCCTTCGACTGCCCCTCCCGCCGG
CCCTGTACCGGAGGGTGCTGCTCTTCCTACCCGGCAACGTGATCCCGTAC
ATGCCTTCCCCGGTGAGGCTGGCGGACTTCTTGACGGCGGCGTACGGCCT
GGGTGGTGTGCGGTCCGTGCTGGCGCTCGACGCCCTGTTCCTTCTCATG back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10067:2383..2631-
>mRNA_E-siliculosus-1a_F_contig10067.104.1 ID=mRNA_E-siliculosus-1a_F_contig10067.104.1|Name=mRNA_E-siliculosus-1a_F_contig10067.104.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=498bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10067:2383..2631- (Ectocarpus siliculosus Ec863f_EcPH12_90f female) back to top