mRNA_E-siliculosus-1a_F_contig10067.104.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10067.104.1
Unique NamemRNA_E-siliculosus-1a_F_contig10067.104.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10067.104.1 vs. uniprot
Match: D7FU50_ECTSI (CBF domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU50_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 9.460e-35
Identity = 67/71 (94.37%), Postives = 68/71 (95.77%), Query Frame = 1
Query:   37 RKRHQAFGDAWLACLRLPLPPALYRRVLLFLPGNVIPYMPSPVRLADFLTAAYGLGGVRSVLALDALFLLM 249
            R   +AFGDAWLACLRLPLPPALYRRVLLFLPGNVIPYMPSPVRLADFLTAAYGLGGVRSVLALDALFLLM
Sbjct:  491 RYHKKAFGDAWLACLRLPLPPALYRRVLLFLPGNVIPYMPSPVRLADFLTAAYGLGGVRSVLALDALFLLM 561          
BLAST of mRNA_E-siliculosus-1a_F_contig10067.104.1 vs. uniprot
Match: A0A150GZC0_GONPE (CBF domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GZC0_GONPE)

HSP 1 Score: 81.3 bits (199), Expect = 4.140e-16
Identity = 46/83 (55.42%), Postives = 57/83 (68.67%), Query Frame = 1
Query:    1 PPPRFVWDACPKRKRHQAFGDAWLACLRLPLPPALYRRVLLFLPGNVIPYMPSPVRLADFLTAAYGLGGVRSVLALDALFLLM 249
            P  R  W A PK ++ + FGDAWLA L LPLPP + R  LL LPG+VIP +P+PVRLADFLT   G  G+  +LAL  +FLL+
Sbjct:  314 PARRAQW-ANPKMQK-RLFGDAWLALLSLPLPPDVLRGALLRLPGSVIPALPAPVRLADFLTHCLGRSGLTGMLALHGIFLLV 394          
BLAST of mRNA_E-siliculosus-1a_F_contig10067.104.1 vs. uniprot
Match: A0A7S0YD13_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Polytomella parva TaxID=51329 RepID=A0A7S0YD13_9CHLO)

HSP 1 Score: 78.2 bits (191), Expect = 1.620e-15
Identity = 41/82 (50.00%), Postives = 53/82 (64.63%), Query Frame = 1
Query:    4 PPRFVWDACPKRKRHQAFGDAWLACLRLPLPPALYRRVLLFLPGNVIPYMPSPVRLADFLTAAYGLGGVRSVLALDALFLLM 249
            P +  W     +KR  AFGDAWLACLRLPLP A+ RR LL LP  +IP++  P++L+D LT     GG+  +LAL  LF L+
Sbjct:   78 PTKATWLNVKNQKR--AFGDAWLACLRLPLPSAVLRRALLLLPTRIIPHLLQPLQLSDLLTFLLNRGGLVGILALHGLFQLV 157          
BLAST of mRNA_E-siliculosus-1a_F_contig10067.104.1 vs. uniprot
Match: A0A0U9HMF3_KLENI (CBF domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A0U9HMF3_KLENI)

HSP 1 Score: 77.8 bits (190), Expect = 6.870e-15
Identity = 41/77 (53.25%), Postives = 54/77 (70.13%), Query Frame = 1
Query:   19 WDACPKRKRHQAFGDAWLACLRLPLPPALYRRVLLFLPGNVIPYMPSPVRLADFLTAAYGLGGVRSVLALDALFLLM 249
            W    KRKR  A  D WLA L+LPLP   Y++VL+ L G ++P MP+PV L+DFLT +Y LGGV SV++LD L+ L+
Sbjct:  240 WTDPKKRKRVAA--DCWLAMLKLPLPVDAYKKVLVKLRGTILPLMPNPVLLSDFLTDSYNLGGVVSVMSLDGLYTLI 314          
BLAST of mRNA_E-siliculosus-1a_F_contig10067.104.1 vs. uniprot
Match: A0A1Z5JIV6_FISSO (U3 small nucleolar RNA-associated protein 19 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JIV6_FISSO)

HSP 1 Score: 77.0 bits (188), Expect = 1.260e-14
Identity = 38/66 (57.58%), Postives = 47/66 (71.21%), Query Frame = 1
Query:   52 AFGDAWLACLRLPLPPALYRRVLLFLPGNVIPYMPSPVRLADFLTAAYGLGGVRSVLALDALFLLM 249
            A+  AWLA L+L LPP   ++ L FLPGNV+P +P P+R +DF   AY  GGV SVLALD LFLL+
Sbjct:  271 AWSKAWLAMLKLDLPPIALKKALRFLPGNVLPLVPHPLRFSDFFMEAYNHGGVVSVLALDGLFLLI 336          
BLAST of mRNA_E-siliculosus-1a_F_contig10067.104.1 vs. uniprot
Match: A0A835YPS8_9STRA (CBF/Mak21 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPS8_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.560e-13
Identity = 34/58 (58.62%), Postives = 42/58 (72.41%), Query Frame = 1
Query:   37 RKRHQAFGDAWLACLRLPLPPALYRRVLLFLPGNVIPYMPSPVRLADFLTAAYGLGGV 210
            R   +AF DAW+ACL LPLPP LYR VLL+LP  V+P M +P++LADF T  Y  GG+
Sbjct:  393 RYHRKAFADAWVACLALPLPPPLYREVLLWLPQKVMPEMGAPLKLADFFTQGYRQGGM 450          
BLAST of mRNA_E-siliculosus-1a_F_contig10067.104.1 vs. uniprot
Match: A0A226N954_CALSU (CBF domain-containing protein n=1 Tax=Callipepla squamata TaxID=9009 RepID=A0A226N954_CALSU)

HSP 1 Score: 72.8 bits (177), Expect = 3.440e-13
Identity = 36/80 (45.00%), Postives = 50/80 (62.50%), Query Frame = 1
Query:   10 RFVWDACPKRKRHQAFGDAWLACLRLPLPPALYRRVLLFLPGNVIPYMPSPVRLADFLTAAYGLGGVRSVLALDALFLLM 249
            R  W     +   QAF   WL  L+  LP  LY++VL+ L  +++PYM  P  + DFLTAAYG+GG  S+LAL+ LF+L+
Sbjct:  115 REEWKVSKLQAHKQAFERMWLTFLKHQLPSGLYKKVLVILHDSILPYMNEPTLMIDFLTAAYGVGGAISLLALNGLFILI 194          
BLAST of mRNA_E-siliculosus-1a_F_contig10067.104.1 vs. uniprot
Match: UPI0014259BA4 (nucleolar complex protein 4 homolog B-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014259BA4)

HSP 1 Score: 72.8 bits (177), Expect = 3.470e-13
Identity = 35/71 (49.30%), Postives = 52/71 (73.24%), Query Frame = 1
Query:   37 RKRHQAFGDAWLACLRLPLPPALYRRVLLFLPGNVIPYMPSPVRLADFLTAAYGLGGVRSVLALDALFLLM 249
            +++ +AF +AWL+ L L LP  +Y++VL  +   +IP M SPV L DFLTA+Y +GG  S+LAL+A+F+LM
Sbjct:  248 KEQRKAFSNAWLSFLLLSLPLHVYKKVLFMMHDKIIPNMSSPVMLTDFLTASYNIGGAISLLALNAIFILM 318          
BLAST of mRNA_E-siliculosus-1a_F_contig10067.104.1 vs. uniprot
Match: UPI001425A872 (LOW QUALITY PROTEIN: nucleolar complex protein 4 homolog B-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI001425A872)

HSP 1 Score: 72.8 bits (177), Expect = 3.870e-13
Identity = 35/71 (49.30%), Postives = 52/71 (73.24%), Query Frame = 1
Query:   37 RKRHQAFGDAWLACLRLPLPPALYRRVLLFLPGNVIPYMPSPVRLADFLTAAYGLGGVRSVLALDALFLLM 249
            +++ +AF +AWL+ L L LP  +Y++VL  +   +IP M SPV L DFLTA+Y +GG  S+LAL+A+F+LM
Sbjct:  248 KEQRKAFSNAWLSFLLLSLPLHVYKKVLFMMHDKIIPNMSSPVMLTDFLTASYNIGGAISLLALNAIFILM 318          
BLAST of mRNA_E-siliculosus-1a_F_contig10067.104.1 vs. uniprot
Match: A0A7S1CDG6_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CDG6_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 3.910e-13
Identity = 36/70 (51.43%), Postives = 50/70 (71.43%), Query Frame = 1
Query:   40 KRHQAFGDAWLACLRLPLPPALYRRVLLFLPGNVIPYMPSPVRLADFLTAAYGLGGVRSVLALDALFLLM 249
            K  +AF DAWLA +R PLPP ++R+ LL LP  +IP+M  P+ L DFLT +Y  GGV ++LAL  L++L+
Sbjct:  242 KLRRAFEDAWLAMMRRPLPPDVFRKTLLLLPKRIIPHMLHPLLLCDFLTDSYDEGGVVALLALHGLWVLI 311          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10067.104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FU50_ECTSI9.460e-3594.37CBF domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A150GZC0_GONPE4.140e-1655.42CBF domain-containing protein n=1 Tax=Gonium pecto... [more]
A0A7S0YD13_9CHLO1.620e-1550.00Hypothetical protein (Fragment) n=1 Tax=Polytomell... [more]
A0A0U9HMF3_KLENI6.870e-1553.25CBF domain-containing protein n=1 Tax=Klebsormidiu... [more]
A0A1Z5JIV6_FISSO1.260e-1457.58U3 small nucleolar RNA-associated protein 19 n=2 T... [more]
A0A835YPS8_9STRA1.560e-1358.62CBF/Mak21 family-domain-containing protein n=1 Tax... [more]
A0A226N954_CALSU3.440e-1345.00CBF domain-containing protein n=1 Tax=Callipepla s... [more]
UPI0014259BA43.470e-1349.30nucleolar complex protein 4 homolog B-like n=1 Tax... [more]
UPI001425A8723.870e-1349.30LOW QUALITY PROTEIN: nucleolar complex protein 4 h... [more]
A0A7S1CDG6_9STRA3.910e-1351.43Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10067contigE-siliculosus-1a_F_contig10067:2383..2631 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size249
Model size249
Exons1
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko01000,ko01001,ko03009
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.U
EC2.7.11.1
EggNOG OGsKOG2154@1,KOG2154@2759
EggNOG free text desc.maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GOsGO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0000981,GO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006355,GO:0006357,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0016072,GO:0019219,GO:0019222,GO:0022613,GO:0030490,GO:0030684,GO:0030686,GO:0030688,GO:0030689,GO:0030692,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140110,GO:1901360,GO:1903506,GO:1990904,GO:2000112,GO:2001141
KEGG Pathwayko04113,ko04138,ko04213,map04113,map04138,map04213
KEGG koko:K12767,ko:K14771
Preferred nameNOC4L
Seed eggNOG ortholog2880.D7FU50
Seed ortholog evalue2.4e-29
Seed ortholog score134.4
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927511.3891318-CDS-E-siliculosus-1a_F_contig10067:2382..26311622927511.3891318-CDS-E-siliculosus-1a_F_contig10067:2382..2631Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10067 2383..2631 -
1696318559.8162773-CDS-E-siliculosus-1a_F_contig10067:2382..26311696318559.8162773-CDS-E-siliculosus-1a_F_contig10067:2382..2631Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10067 2383..2631 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10067.104.1prot_E-siliculosus-1a_F_contig10067.104.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10067 2383..2631 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10067.104.1

>prot_E-siliculosus-1a_F_contig10067.104.1 ID=prot_E-siliculosus-1a_F_contig10067.104.1|Name=mRNA_E-siliculosus-1a_F_contig10067.104.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=83bp
PPPRFVWDACPKRKRHQAFGDAWLACLRLPLPPALYRRVLLFLPGNVIPY
MPSPVRLADFLTAAYGLGGVRSVLALDALFLLM
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mRNA from alignment at E-siliculosus-1a_F_contig10067:2383..2631-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10067.104.1 ID=mRNA_E-siliculosus-1a_F_contig10067.104.1|Name=mRNA_E-siliculosus-1a_F_contig10067.104.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=249bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10067:2383..2631- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCCCCCCCCCGCTTCGTCTGGGATGCCTGCCCGAAACGAAAACGACACCA GGCGTTCGGCGACGCGTGGCTCGCCTGCCTTCGACTGCCCCTCCCGCCGG CCCTGTACCGGAGGGTGCTGCTCTTCCTACCCGGCAACGTGATCCCGTAC ATGCCTTCCCCGGTGAGGCTGGCGGACTTCTTGACGGCGGCGTACGGCCT GGGTGGTGTGCGGTCCGTGCTGGCGCTCGACGCCCTGTTCCTTCTCATG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10067:2383..2631-

>mRNA_E-siliculosus-1a_F_contig10067.104.1 ID=mRNA_E-siliculosus-1a_F_contig10067.104.1|Name=mRNA_E-siliculosus-1a_F_contig10067.104.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=498bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10067:2383..2631- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCCCCCCCCCGCTTCGTCTGGGATGCCTGCCCGAAACGAAAACGACACCA
GGCGTTCGGCGACGCGTGGCTCGCCTGCCTTCGACTGCCCCTCCCGCCGG
CCCTGTACCGGAGGGTGCTGCTCTTCCTACCCGGCAACGTGATCCCGTAC
ATGCCTTCCCCGGTGAGGCTGGCGGACTTCTTGACGGCGGCGTACGGCCT
GGGTGGTGTGCGGTCCGTGCTGGCGCTCGACGCCCTGTTCCTTCTCATGC
CCCCCCCCCGCTTCGTCTGGGATGCCTGCCCGAAACGAAAACGACACCAG
GCGTTCGGCGACGCGTGGCTCGCCTGCCTTCGACTGCCCCTCCCGCCGGC
CCTGTACCGGAGGGTGCTGCTCTTCCTACCCGGCAACGTGATCCCGTACA
TGCCTTCCCCGGTGAGGCTGGCGGACTTCTTGACGGCGGCGTACGGCCTG
GGTGGTGTGCGGTCCGTGCTGGCGCTCGACGCCCTGTTCCTTCTCATG
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