mRNA_E-siliculosus-1a_F_contig10063.102.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10063.102.1
Unique NamemRNA_E-siliculosus-1a_F_contig10063.102.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig10063.102.1 vs. uniprot
Match: D7FJV6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJV6_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 6.140e-53
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1 
Query:    1 MWRPPQPTNRFDSAGRWRVKWTSTGQQVKAHTQEQSGTTFPRHRNLRDMVLRVTKAHMASTRQDLSERQLLEEDRLHEDFVAQ 249
            MWRPPQPTNRFDSAGRWRVKWTSTGQQVKAHTQEQSGTTFPRHRNLRDMVLRVTKAHMASTRQDLSERQLLEEDRLHEDFVAQ
Sbjct:    1 MWRPPQPTNRFDSAGRWRVKWTSTGQQVKAHTQEQSGTTFPRHRNLRDMVLRVTKAHMASTRQDLSERQLLEEDRLHEDFVAQ 83
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BLAST of mRNA_E-siliculosus-1a_F_contig10063.102.1 vs. uniprot
Match: A0A6H5KAW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAW0_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 5.890e-6
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:  136 LRDMVLRVTKAHMASTRQDLSERQLLEEDRLHEDFVAQ 249
            L  ++ R TKAHM STR+DLSE QL+ EDRLHEDF+AQ
Sbjct:   39 LHRVMWRYTKAHMQSTREDLSEGQLVGEDRLHEDFLAQ 76
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BLAST of mRNA_E-siliculosus-1a_F_contig10063.102.1 vs. uniprot
Match: A0A6H5JV29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV29_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 9.020e-6
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:  136 LRDMVLRVTKAHMASTRQDLSERQLLEEDRLHEDFVAQ 249
            L  ++ R TKAHM STR+DLSE QL+ EDRLHEDF+AQ
Sbjct:   48 LHRVMWRYTKAHMQSTREDLSEGQLVGEDRLHEDFLAQ 85
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BLAST of mRNA_E-siliculosus-1a_F_contig10063.102.1 vs. uniprot
Match: A0A6H5K4A1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4A1_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 1.400e-5
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:  136 LRDMVLRVTKAHMASTRQDLSERQLLEEDRLHEDFVAQ 249
            L  ++ R TKAHM STR+DLSE QL+ EDRLHEDF+AQ
Sbjct:   39 LHRVMWRYTKAHMQSTREDLSEGQLVGEDRLHEDFLAQ 76
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BLAST of mRNA_E-siliculosus-1a_F_contig10063.102.1 vs. uniprot
Match: A0A6H5K1Q8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1Q8_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 2.270e-5
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:  136 LRDMVLRVTKAHMASTRQDLSERQLLEEDRLHEDFVAQ 249
            L  ++ R TKAHM STR+DLSE QL+ EDRLHEDF+AQ
Sbjct:    9 LHRVMWRYTKAHMQSTREDLSEGQLVGEDRLHEDFLAQ 46
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig10063.102.1 vs. uniprot
Match: A0A6H5L7R4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7R4_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 2.740e-5
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:  136 LRDMVLRVTKAHMASTRQDLSERQLLEEDRLHEDFVAQ 249
            L  ++ R TKAHM STR+DLSE QL+ EDRLHEDF+AQ
Sbjct:  204 LHRVMWRYTKAHMQSTREDLSEGQLVGEDRLHEDFLAQ 241
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig10063.102.1 vs. uniprot
Match: A0A6H5KEJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEJ3_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 2.780e-5
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:  136 LRDMVLRVTKAHMASTRQDLSERQLLEEDRLHEDFVAQ 249
            L  ++ R TKAHM STR+DLSE QL+ EDRLHEDF+AQ
Sbjct:  244 LHRVMWRYTKAHMQSTREDLSEGQLVGEDRLHEDFLAQ 281
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig10063.102.1 vs. uniprot
Match: A0A6H5KZ86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ86_9PHAE)

HSP 1 Score: 48.9 bits (115), Expect = 3.240e-5
Identity = 25/38 (65.79%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:  136 LRDMVLRVTKAHMASTRQDLSERQLLEEDRLHEDFVAQ 249
            L  ++ R TK HM STR+DLSE QL+ EDRLHEDF+AQ
Sbjct:   80 LHRVMWRYTKTHMQSTREDLSEGQLVGEDRLHEDFLAQ 117
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10063.102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FJV6_ECTSI6.140e-53100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KAW0_9PHAE5.890e-668.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV29_9PHAE9.020e-668.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4A1_9PHAE1.400e-568.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1Q8_9PHAE2.270e-568.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7R4_9PHAE2.740e-568.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEJ3_9PHAE2.780e-568.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZ86_9PHAE3.240e-565.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10063contigE-siliculosus-1a_F_contig10063:498..2563 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size249
Model size251
Exons2
Ec32 orthologEc-10_000620.1
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927511.1465619-CDS-E-siliculosus-1a_F_contig10063:497..6061622927511.1465619-CDS-E-siliculosus-1a_F_contig10063:497..606Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10063 498..606 -
1696318559.7404943-CDS-E-siliculosus-1a_F_contig10063:497..6061696318559.7404943-CDS-E-siliculosus-1a_F_contig10063:497..606Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10063 498..606 -
1622927511.1568916-CDS-E-siliculosus-1a_F_contig10063:2423..25631622927511.1568916-CDS-E-siliculosus-1a_F_contig10063:2423..2563Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10063 2424..2563 -
1696318559.7564268-CDS-E-siliculosus-1a_F_contig10063:2423..25631696318559.7564268-CDS-E-siliculosus-1a_F_contig10063:2423..2563Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10063 2424..2563 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10063.102.1prot_E-siliculosus-1a_F_contig10063.102.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10063 498..2563 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10063.102.1

>prot_E-siliculosus-1a_F_contig10063.102.1 ID=prot_E-siliculosus-1a_F_contig10063.102.1|Name=mRNA_E-siliculosus-1a_F_contig10063.102.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=83bp
MWRPPQPTNRFDSAGRWRVKWTSTGQQVKAHTQEQSGTTFPRHRNLRDMV
LRVTKAHMASTRQDLSERQLLEEDRLHEDFVAQ
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mRNA from alignment at E-siliculosus-1a_F_contig10063:498..2563-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10063.102.1 ID=mRNA_E-siliculosus-1a_F_contig10063.102.1|Name=mRNA_E-siliculosus-1a_F_contig10063.102.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2066bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10063:498..2563- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTGGAGGCCACCCCAACCAACAAACCGCTTTGACTCAGCCGGCCGCTG
GAGGGTAAAGTGGACCTCAACAGGACAGCAGGTCAAGGCACACACTCAGG
AGCAATCGGGCACAACCTTTCCTCGGCATCGCAATCTCAGGTGAAAGCTG
CCTCGTATAGACATTCACCGGCGCACCCCCACCCAGACGCAAGGAGTACA
GCAGCAGCCTACAGTCTACATTCAGATGTACAAAATTGTCTAACGGCAAC
GAGAGACTCGCATGGCAACAGAACAGCAGTCAGCCTCTGTTGGTGCGTGT
AGCATACGTCACGCTCGCATGCTTGCACGCTTGCACACATAGGCGTCTCT
CACATCGCTTCGCGAACGCGTGCTTTTCTTGGCGCGTTAGCGCAAAGCTC
GTACGAAGAGAAATTATCAGGGTACACCTCGGTACTAGTTTTTTAGGCGG
ATCCAGGCGGGGCGGTACGTCAATGTGGCGGTATTTTTTTGGCGGTTGGC
GGTATTTCGTTTTCCGGCGGTACCGCCTTTGGCGGTTCCCGGTACTGCCA
ATAATGGCGGTACTTTTTTGGCGGTACGTCAATATGGCGGTTTTTTTTAG
GCGGTTCCCGGTACTTCGTTTTTTCGGCGGTATTTTTCTGACGGTACTGA
AATATGGCGGTACCGCCTTCGGCGGTTCCCGGTACTGCCAAATATGGCGG
TTTTTTGGTGGCGGTACTGAAATATGGCGGCACCGCCTTCGAGGGTTGCG
AGTAGACCAGAATATCAAAATATAAAATATGGCGATGCCAAACTACATTT
CGGTGCCCTTGGCGCCCCATCAACCGGCGAACCTCTTTCCTCTCTTTTAG
GATGGGTCTCTTTTTGTCTCTTGTATGTACGCTTGAGAGCCTGCATCTCC
CATATGATTTCGTGATTTCACGATGCGATGCATACCCATGGTCAAATCGA
GCTGTTCATGGACAAACGAAAGGCAACCTAAAGAAGAAAGAAAATGCAAA
AAGAGAAGAGTGCGCCAAAACGCGATCCGTCGAATGCCACGGGAAACAGA
AGCATAACTTGTTGTAGAACGACAACAGATTGAAGTCAACACTTCACATG
GCAATTCGTGATAGCGTCTAAAACGCTAAGACCAATCAATTTTCCCGAGG
TGTACCCTGGTTTTTTCGGCGGTACTTGTTCGGCGGTACTTGTTCGGCGG
TACTGCAATATTGCGGTTCTTTTTAGGCGGTTCCCGGTACTTCGTTTTTT
CGGCGGTACTTTTTCGGCGGTACTGCAAAGTGGCGGTATTTTTTAGGCGG
TCGGCGGTTTTTCGTTTTTCGGCGGTACCGCCTTCGGCGGTTCCCGGTAC
CACCGAATGTGGCGGTAATTCCCGCCAGTACCGGGACCGCCCACCACGGC
GGGAAAAAAACGGCGGGAATTTTCCCGAGGTGTACCCTGGAAATTATAGT
TTCTGTAGGTCGCGTAAGATACCACGGGTGTGGTATCTATGCTGTACAAT
ATGAACCACCGAGTCTACCATGTGCGACGCGTTTGTGCAGTCGTACCATG
TATCCCCTGCCTGTATTTGTCTAGTTCAACCTACATGTATGGCACCACGA
CCGTTATGACCGTGATCTTTGCTGTTTGTATAGCATGACTGCTGATGATC
CGGCGTTGTGTTTTACACCCCTCTACTATCCTACAGCAACCTCGTCTTAC
ATGTAGATCAGATTTCTCCCATGGAGTGTACCCGCTGTTACCTTGTGTAA
TTTCGATGGAAGAAGTGGGTGGTGCCGCTAGGTGGTATTGCCTGTTCGAA
CTCTGTTCAACTACATATGTGTGTTGTAACAAGAGCGGTGCGGATGATGA
GATATCTGTGCCCTGTAGGGAGTGCAGATGTGGTCTTACCCATCCAACGT
CTCTATTGTTCTCGGTCTGATGCGTGCCTATTGGTTGTCTTTTTTATTGC
GTGCTAGGGACATGGTCTTGCGAGTCACCAAGGCGCACATGGCGTCGACA
CGTCAGGACCTATCCGAGAGGCAACTGCTGGAAGAGGATCGGCTACACGA
GGACTTCGTGGCGCAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10063:498..2563-

>mRNA_E-siliculosus-1a_F_contig10063.102.1 ID=mRNA_E-siliculosus-1a_F_contig10063.102.1|Name=mRNA_E-siliculosus-1a_F_contig10063.102.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=498bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10063:498..2563- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTGGAGGCCACCCCAACCAACAAACCGCTTTGACTCAGCCGGCCGCTG
GAGGGTAAAGTGGACCTCAACAGGACAGCAGGTCAAGGCACACACTCAGG
AGCAATCGGGCACAACCTTTCCTCGGCATCGCAATCTCAGATGTGGAGGC
CACCCCAACCAACAAACCGCTTTGACTCAGCCGGCCGCTGGAGGGTAAAG
TGGACCTCAACAGGACAGCAGGTCAAGGCACACACTCAGGAGCAATCGGG
CACAACCTTTCCTCGGCATCGCAATCTCAGGGACATGGTCTTGCGAGTCA
CCAAGGCGCACATGGCGTCGACACGTCAGGACCTATCCGAGAGGCAACTG
CTGGAAGAGGATCGGCTACACGAGGACTTCGTGGCGCAGGGACATGGTCT
TGCGAGTCACCAAGGCGCACATGGCGTCGACACGTCAGGACCTATCCGAG
AGGCAACTGCTGGAAGAGGATCGGCTACACGAGGACTTCGTGGCGCAG
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