mRNA_E-siliculosus-1a_F_contig10063.102.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_E-siliculosus-1a_F_contig10063.102.1 vs. uniprot
Match: D7FJV6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJV6_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 6.140e-53
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1

Query:    1 MWRPPQPTNRFDSAGRWRVKWTSTGQQVKAHTQEQSGTTFPRHRNLRDMVLRVTKAHMASTRQDLSERQLLEEDRLHEDFVAQ 249
            MWRPPQPTNRFDSAGRWRVKWTSTGQQVKAHTQEQSGTTFPRHRNLRDMVLRVTKAHMASTRQDLSERQLLEEDRLHEDFVAQ
Sbjct:    1 MWRPPQPTNRFDSAGRWRVKWTSTGQQVKAHTQEQSGTTFPRHRNLRDMVLRVTKAHMASTRQDLSERQLLEEDRLHEDFVAQ 83

[Close]

BLAST of mRNA_E-siliculosus-1a_F_contig10063.102.1 vs. uniprot
Match: A0A6H5KAW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAW0_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 5.890e-6
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 1

Query:  136 LRDMVLRVTKAHMASTRQDLSERQLLEEDRLHEDFVAQ 249
            L  ++ R TKAHM STR+DLSE QL+ EDRLHEDF+AQ
Sbjct:   39 LHRVMWRYTKAHMQSTREDLSEGQLVGEDRLHEDFLAQ 76

[Close]

BLAST of mRNA_E-siliculosus-1a_F_contig10063.102.1 vs. uniprot
Match: A0A6H5JV29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV29_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 9.020e-6
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 1

Query:  136 LRDMVLRVTKAHMASTRQDLSERQLLEEDRLHEDFVAQ 249
            L  ++ R TKAHM STR+DLSE QL+ EDRLHEDF+AQ
Sbjct:   48 LHRVMWRYTKAHMQSTREDLSEGQLVGEDRLHEDFLAQ 85

[Close]

BLAST of mRNA_E-siliculosus-1a_F_contig10063.102.1 vs. uniprot
Match: A0A6H5K4A1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4A1_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 1.400e-5
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 1

Query:  136 LRDMVLRVTKAHMASTRQDLSERQLLEEDRLHEDFVAQ 249
            L  ++ R TKAHM STR+DLSE QL+ EDRLHEDF+AQ
Sbjct:   39 LHRVMWRYTKAHMQSTREDLSEGQLVGEDRLHEDFLAQ 76

[Close]

BLAST of mRNA_E-siliculosus-1a_F_contig10063.102.1 vs. uniprot
Match: A0A6H5K1Q8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1Q8_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 2.270e-5
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 1

Query:  136 LRDMVLRVTKAHMASTRQDLSERQLLEEDRLHEDFVAQ 249
            L  ++ R TKAHM STR+DLSE QL+ EDRLHEDF+AQ
Sbjct:    9 LHRVMWRYTKAHMQSTREDLSEGQLVGEDRLHEDFLAQ 46

[Close]

BLAST of mRNA_E-siliculosus-1a_F_contig10063.102.1 vs. uniprot
Match: A0A6H5L7R4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7R4_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 2.740e-5
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 1

Query:  136 LRDMVLRVTKAHMASTRQDLSERQLLEEDRLHEDFVAQ 249
            L  ++ R TKAHM STR+DLSE QL+ EDRLHEDF+AQ
Sbjct:  204 LHRVMWRYTKAHMQSTREDLSEGQLVGEDRLHEDFLAQ 241

[Close]

BLAST of mRNA_E-siliculosus-1a_F_contig10063.102.1 vs. uniprot
Match: A0A6H5KEJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEJ3_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 2.780e-5
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 1

Query:  136 LRDMVLRVTKAHMASTRQDLSERQLLEEDRLHEDFVAQ 249
            L  ++ R TKAHM STR+DLSE QL+ EDRLHEDF+AQ
Sbjct:  244 LHRVMWRYTKAHMQSTREDLSEGQLVGEDRLHEDFLAQ 281

[Close]

BLAST of mRNA_E-siliculosus-1a_F_contig10063.102.1 vs. uniprot
Match: A0A6H5KZ86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ86_9PHAE)

HSP 1 Score: 48.9 bits (115), Expect = 3.240e-5
Identity = 25/38 (65.79%), Postives = 30/38 (78.95%), Query Frame = 1

Query:  136 LRDMVLRVTKAHMASTRQDLSERQLLEEDRLHEDFVAQ 249
            L  ++ R TK HM STR+DLSE QL+ EDRLHEDF+AQ
Sbjct:   80 LHRVMWRYTKTHMQSTREDLSEGQLVGEDRLHEDFLAQ 117

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_F_contig10063.102.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_F_contig10063.102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 8

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
D7FJV6_ECTSI	6.140e-53	100.00	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KAW0_9PHAE	5.890e-6	68.42	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JV29_9PHAE	9.020e-6	68.42	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K4A1_9PHAE	1.400e-5	68.42	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K1Q8_9PHAE	2.270e-5	68.42	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L7R4_9PHAE	2.740e-5	68.42	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KEJ3_9PHAE	2.780e-5	68.42	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KZ86_9PHAE	3.240e-5	65.79	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_F_contig10063	contig	E-siliculosus-1a_F_contig10063:498..2563 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-siliculosus-1a_F_contig10063:498..2563-
coding sequence from alignment at E-siliculosus-1a_F_contig10063:498..2563-

protein sequence of mRNA_E-siliculosus-1a_F_contig10063.102.1

>prot_E-siliculosus-1a_F_contig10063.102.1 ID=prot_E-siliculosus-1a_F_contig10063.102.1|Name=mRNA_E-siliculosus-1a_F_contig10063.102.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=83bp
MWRPPQPTNRFDSAGRWRVKWTSTGQQVKAHTQEQSGTTFPRHRNLRDMV
LRVTKAHMASTRQDLSERQLLEEDRLHEDFVAQ

mRNA from alignment at E-siliculosus-1a_F_contig10063:498..2563-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-siliculosus-1a_F_contig10063.102.1 ID=mRNA_E-siliculosus-1a_F_contig10063.102.1|Name=mRNA_E-siliculosus-1a_F_contig10063.102.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2066bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10063:498..2563- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTGGAGGCCACCCCAACCAACAAACCGCTTTGACTCAGCCGGCCGCTG
GAGGGTAAAGTGGACCTCAACAGGACAGCAGGTCAAGGCACACACTCAGG
AGCAATCGGGCACAACCTTTCCTCGGCATCGCAATCTCAGGTGAAAGCTG
CCTCGTATAGACATTCACCGGCGCACCCCCACCCAGACGCAAGGAGTACA
GCAGCAGCCTACAGTCTACATTCAGATGTACAAAATTGTCTAACGGCAAC
GAGAGACTCGCATGGCAACAGAACAGCAGTCAGCCTCTGTTGGTGCGTGT
AGCATACGTCACGCTCGCATGCTTGCACGCTTGCACACATAGGCGTCTCT
CACATCGCTTCGCGAACGCGTGCTTTTCTTGGCGCGTTAGCGCAAAGCTC
GTACGAAGAGAAATTATCAGGGTACACCTCGGTACTAGTTTTTTAGGCGG
ATCCAGGCGGGGCGGTACGTCAATGTGGCGGTATTTTTTTGGCGGTTGGC
GGTATTTCGTTTTCCGGCGGTACCGCCTTTGGCGGTTCCCGGTACTGCCA
ATAATGGCGGTACTTTTTTGGCGGTACGTCAATATGGCGGTTTTTTTTAG
GCGGTTCCCGGTACTTCGTTTTTTCGGCGGTATTTTTCTGACGGTACTGA
AATATGGCGGTACCGCCTTCGGCGGTTCCCGGTACTGCCAAATATGGCGG
TTTTTTGGTGGCGGTACTGAAATATGGCGGCACCGCCTTCGAGGGTTGCG
AGTAGACCAGAATATCAAAATATAAAATATGGCGATGCCAAACTACATTT
CGGTGCCCTTGGCGCCCCATCAACCGGCGAACCTCTTTCCTCTCTTTTAG
GATGGGTCTCTTTTTGTCTCTTGTATGTACGCTTGAGAGCCTGCATCTCC
CATATGATTTCGTGATTTCACGATGCGATGCATACCCATGGTCAAATCGA
GCTGTTCATGGACAAACGAAAGGCAACCTAAAGAAGAAAGAAAATGCAAA
AAGAGAAGAGTGCGCCAAAACGCGATCCGTCGAATGCCACGGGAAACAGA
AGCATAACTTGTTGTAGAACGACAACAGATTGAAGTCAACACTTCACATG
GCAATTCGTGATAGCGTCTAAAACGCTAAGACCAATCAATTTTCCCGAGG
TGTACCCTGGTTTTTTCGGCGGTACTTGTTCGGCGGTACTTGTTCGGCGG
TACTGCAATATTGCGGTTCTTTTTAGGCGGTTCCCGGTACTTCGTTTTTT
CGGCGGTACTTTTTCGGCGGTACTGCAAAGTGGCGGTATTTTTTAGGCGG
TCGGCGGTTTTTCGTTTTTCGGCGGTACCGCCTTCGGCGGTTCCCGGTAC
CACCGAATGTGGCGGTAATTCCCGCCAGTACCGGGACCGCCCACCACGGC
GGGAAAAAAACGGCGGGAATTTTCCCGAGGTGTACCCTGGAAATTATAGT
TTCTGTAGGTCGCGTAAGATACCACGGGTGTGGTATCTATGCTGTACAAT
ATGAACCACCGAGTCTACCATGTGCGACGCGTTTGTGCAGTCGTACCATG
TATCCCCTGCCTGTATTTGTCTAGTTCAACCTACATGTATGGCACCACGA
CCGTTATGACCGTGATCTTTGCTGTTTGTATAGCATGACTGCTGATGATC
CGGCGTTGTGTTTTACACCCCTCTACTATCCTACAGCAACCTCGTCTTAC
ATGTAGATCAGATTTCTCCCATGGAGTGTACCCGCTGTTACCTTGTGTAA
TTTCGATGGAAGAAGTGGGTGGTGCCGCTAGGTGGTATTGCCTGTTCGAA
CTCTGTTCAACTACATATGTGTGTTGTAACAAGAGCGGTGCGGATGATGA
GATATCTGTGCCCTGTAGGGAGTGCAGATGTGGTCTTACCCATCCAACGT
CTCTATTGTTCTCGGTCTGATGCGTGCCTATTGGTTGTCTTTTTTATTGC
GTGCTAGGGACATGGTCTTGCGAGTCACCAAGGCGCACATGGCGTCGACA
CGTCAGGACCTATCCGAGAGGCAACTGCTGGAAGAGGATCGGCTACACGA
GGACTTCGTGGCGCAG

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10063:498..2563-

>mRNA_E-siliculosus-1a_F_contig10063.102.1 ID=mRNA_E-siliculosus-1a_F_contig10063.102.1|Name=mRNA_E-siliculosus-1a_F_contig10063.102.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=498bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10063:498..2563- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTGGAGGCCACCCCAACCAACAAACCGCTTTGACTCAGCCGGCCGCTG
GAGGGTAAAGTGGACCTCAACAGGACAGCAGGTCAAGGCACACACTCAGG
AGCAATCGGGCACAACCTTTCCTCGGCATCGCAATCTCAGATGTGGAGGC
CACCCCAACCAACAAACCGCTTTGACTCAGCCGGCCGCTGGAGGGTAAAG
TGGACCTCAACAGGACAGCAGGTCAAGGCACACACTCAGGAGCAATCGGG
CACAACCTTTCCTCGGCATCGCAATCTCAGGGACATGGTCTTGCGAGTCA
CCAAGGCGCACATGGCGTCGACACGTCAGGACCTATCCGAGAGGCAACTG
CTGGAAGAGGATCGGCTACACGAGGACTTCGTGGCGCAGGGACATGGTCT
TGCGAGTCACCAAGGCGCACATGGCGTCGACACGTCAGGACCTATCCGAG
AGGCAACTGCTGGAAGAGGATCGGCTACACGAGGACTTCGTGGCGCAG