prot_E-siliculosus-1a_F_contig1006.99.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1006.99.1
Unique Nameprot_E-siliculosus-1a_F_contig1006.99.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length320
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1006.99.1 vs. uniprot
Match: A0A6H5L0F7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0F7_9PHAE)

HSP 1 Score: 487 bits (1254), Expect = 9.040e-172
Identity = 259/312 (83.01%), Postives = 266/312 (85.26%), Query Frame = 0 
Query:    8 MPPPQQQPGNECAPGFQCTPRLTFWIIAASSWVVWIFAVSAAADDKWIKDNGQGDWLAAGEDPVLTFCEDLDDADDDDVLDADEYKDFVSICDLYRAFTAMQMLATIVCSVSVLLLALAFFRPEAGKCASARTLAFVGGALMATYALFQLVAVVLAGVLAQEFDNLPNDDDTSYFSGYDGSYSFWDAGYEAEVGATFGVGVTALILAVIMTVALCLCARRTGDGPLYKCCHSLMLANKSNGIPRSGSEGGVGGGGGKGVPVVADLREGSHHTSVAAARPGATEQPSQQQHYEQAQPQRQPPPRYDTLPSAGV 319
            MPPPQQQ GNECAPGFQCTPRLTFW+IAASSW+VWIFAVSAAADDKWIKDNGQGDWLAAGEDPVL  C+ LDDA DDD+L  DEYKDFVSICDLYRAFTAMQMLATIVCSVSVLLLALAFFRPEAGKCAS RTLAFVGGALMATYALFQLVAVVLA VLAQEFDNLPNDDDTSY SGYDG Y+F++AGYEAEVG TFGVGVTALILAVIMTV LCLCA RTGDGPLYKCCHSLMLANKSNGIP SG EGG      KGVPVVADL       SVAAARPGATEQPSQ             PP Y  LPSA V
Sbjct:    1 MPPPQQQQGNECAPGFQCTPRLTFWVIAASSWLVWIFAVSAAADDKWIKDNGQGDWLAAGEDPVLNLCDGLDDAADDDLLATDEYKDFVSICDLYRAFTAMQMLATIVCSVSVLLLALAFFRPEAGKCASTRTLAFVGGALMATYALFQLVAVVLAAVLAQEFDNLPNDDDTSYLSGYDGFYTFFEAGYEAEVGPTFGVGVTALILAVIMTVVLCLCATRTGDGPLYKCCHSLMLANKSNGIPSSGGEGGXXXXXXKGVPVVADLP-----ASVAAARPGATEQPSQXXXXXXXXXXXXXPPPYGILPSAEV 307
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BLAST of mRNA_E-siliculosus-1a_F_contig1006.99.1 vs. uniprot
Match: A0A6H5KJK8_9PHAE (WW domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJK8_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 2.080e-43
Identity = 93/223 (41.70%), Postives = 131/223 (58.74%), Query Frame = 0 
Query:   25 CTPRLTFWIIAASSWVVWIFAVSAAADDKWIKDNGQGDWLAAGEDPVLTFCEDLDDADDDDVLDADEYKDFVSICDLYRAFTAMQMLATIVCSVSVLLLALAFFRPEAG-KCASARTLAFVGGALMATYALFQLVAVVLAGVLAQEFDNLPNDDDTSYFSGYDGSYSFWDAGYEAEVGATFGVGVTALILAVIMTVALCLCARRTGDGPLYKCCHSLMLANKS 246
            CTPRLTFWI  A  WV+W+FAV+A+ADDKW K +G    + AG++ +L  C+  DD                 +C LY+AFTAMQ +A +V SVS++L  LA FRP AG KC S ++LA   G+LM  +A F+++A VL  V+ +E D   N   T +  G            EA++GATFG+ V A++L V+  V++   AR +GDGP +KC +  M  N +
Sbjct:   72 CTPRLTFWISCALGWVIWVFAVAASADDKWAKIDGFD--IGAGDEDILDDCDSSDD-----------------VCSLYKAFTAMQFIAAVVVSVSMVLFTLALFRPAAGLKCCSVKSLAIAAGSLMMAFAFFEMLAFVLIIVIEKELDGEFN---TGFGFG------------EADLGATFGLAVVAVVLGVVQAVSVLTFARSSGDGPFFKCLNECMAMNNA 260
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1006.99.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L0F7_9PHAE9.040e-17283.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJK8_9PHAE2.080e-4341.70WW domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.140.150coord: 32..238
e-value: 6.6E-7
score: 30.8
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 29..50
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 200..225
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 51..109
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 140..167
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 110..128
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..28
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 129..139
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 226..319
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 168..199
NoneNo IPR availableTMHMMTMhelixcoord: 29..51
NoneNo IPR availableTMHMMTMhelixcoord: 141..163
NoneNo IPR availableTMHMMTMhelixcoord: 106..128
NoneNo IPR availableTMHMMTMhelixcoord: 203..225
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 80..92

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1006contigE-siliculosus-1a_F_contig1006:8317..12046 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1006.99.1mRNA_E-siliculosus-1a_F_contig1006.99.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1006 5415..12563 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1006.99.1 ID=prot_E-siliculosus-1a_F_contig1006.99.1|Name=mRNA_E-siliculosus-1a_F_contig1006.99.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=320bp
MSQPVVTMPPPQQQPGNECAPGFQCTPRLTFWIIAASSWVVWIFAVSAAA
DDKWIKDNGQGDWLAAGEDPVLTFCEDLDDADDDDVLDADEYKDFVSICD
LYRAFTAMQMLATIVCSVSVLLLALAFFRPEAGKCASARTLAFVGGALMA
TYALFQLVAVVLAGVLAQEFDNLPNDDDTSYFSGYDGSYSFWDAGYEAEV
GATFGVGVTALILAVIMTVALCLCARRTGDGPLYKCCHSLMLANKSNGIP
RSGSEGGVGGGGGKGVPVVADLREGSHHTSVAAARPGATEQPSQQQHYEQ
AQPQRQPPPRYDTLPSAGV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018247EF_Hand_1_Ca_BS