mRNA_E-siliculosus-1a_F_contig10056.98.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10056.98.1
Unique NamemRNA_E-siliculosus-1a_F_contig10056.98.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig10056.98.1 vs. uniprot
Match: A0A6H5JA50_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA50_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 3.150e-38
Identity = 62/93 (66.67%), Postives = 79/93 (84.95%), Query Frame = 1 
Query:    1 FRKLVQALYGSTYMFRPKNTGPYIDPCERVAVFLFRVGGGHGVRGTAAHFDISEGSVVDWTLKVAKLIVKRLQSQYVRWPRPEEQALMASEWE 279
            FR+LV AL+G+TY+FR  NTGPYIDPCERVAVFLFRVG G GVR TA+HF+++EG+VV+WT+ VA+ I KRL  +YVRWP PEEQ+ +++ WE
Sbjct:   15 FRRLVHALFGTTYVFRVNNTGPYIDPCERVAVFLFRVGHGSGVRATASHFNMAEGAVVNWTMSVARRIRKRLLCEYVRWPSPEEQSEISTAWE 107
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BLAST of mRNA_E-siliculosus-1a_F_contig10056.98.1 vs. uniprot
Match: A0A6H5JSG7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSG7_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 1.570e-15
Identity = 40/80 (50.00%), Postives = 53/80 (66.25%), Query Frame = 1 
Query:   40 MFRPKNTGPYIDPCERVAVFLFRVGGGHGVRGTAAHFDISEGSVVDWTLKVAKLIVKRLQSQYVRWPRPEEQALMASEWE 279
            M R    GP  DPCERVAVF++R+GG   VR TA  F +S+G+V   TL+VA+ + K L+ + V WP PEEQ  M++ WE
Sbjct:    1 MCRKGRRGPPFDPCERVAVFMWRLGGDSTVRQTALQFGLSDGTVSQVTLEVARRVDKYLRDECVWWPSPEEQRDMSAAWE 80
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10056.98.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JA50_9PHAE3.150e-3866.67DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JSG7_9PHAE1.570e-1550.00DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10056contigE-siliculosus-1a_F_contig10056:2205..2483 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size279
Model size279
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927510.818455-CDS-E-siliculosus-1a_F_contig10056:2204..24831622927510.818455-CDS-E-siliculosus-1a_F_contig10056:2204..2483Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10056 2205..2483 +
1696318559.5362127-CDS-E-siliculosus-1a_F_contig10056:2204..24831696318559.5362127-CDS-E-siliculosus-1a_F_contig10056:2204..2483Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10056 2205..2483 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10056.98.1prot_E-siliculosus-1a_F_contig10056.98.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10056 2205..2483 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10056.98.1

>prot_E-siliculosus-1a_F_contig10056.98.1 ID=prot_E-siliculosus-1a_F_contig10056.98.1|Name=mRNA_E-siliculosus-1a_F_contig10056.98.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=93bp
FRKLVQALYGSTYMFRPKNTGPYIDPCERVAVFLFRVGGGHGVRGTAAHF
DISEGSVVDWTLKVAKLIVKRLQSQYVRWPRPEEQALMASEWE
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mRNA from alignment at E-siliculosus-1a_F_contig10056:2205..2483+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10056.98.1 ID=mRNA_E-siliculosus-1a_F_contig10056.98.1|Name=mRNA_E-siliculosus-1a_F_contig10056.98.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=279bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10056:2205..2483+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTCCGGAAGCTGGTGCAGGCCCTGTACGGCAGCACGTACATGTTTCGTCC
GAAAAACACGGGGCCGTACATTGACCCGTGCGAACGCGTCGCCGTGTTCC
TTTTCCGGGTTGGGGGTGGGCATGGAGTGCGGGGCACAGCTGCGCACTTT
GACATATCGGAAGGTTCCGTTGTGGACTGGACACTGAAGGTGGCGAAACT
GATCGTCAAACGCCTACAATCTCAGTACGTGAGGTGGCCGAGACCCGAAG
AGCAAGCACTCATGGCTTCGGAATGGGAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10056:2205..2483+

>mRNA_E-siliculosus-1a_F_contig10056.98.1 ID=mRNA_E-siliculosus-1a_F_contig10056.98.1|Name=mRNA_E-siliculosus-1a_F_contig10056.98.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=558bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10056:2205..2483+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTCCGGAAGCTGGTGCAGGCCCTGTACGGCAGCACGTACATGTTTCGTCC
GAAAAACACGGGGCCGTACATTGACCCGTGCGAACGCGTCGCCGTGTTCC
TTTTCCGGGTTGGGGGTGGGCATGGAGTGCGGGGCACAGCTGCGCACTTT
GACATATCGGAAGGTTCCGTTGTGGACTGGACACTGAAGGTGGCGAAACT
GATCGTCAAACGCCTACAATCTCAGTACGTGAGGTGGCCGAGACCCGAAG
AGCAAGCACTCATGGCTTCGGAATGGGAGTTCCGGAAGCTGGTGCAGGCC
CTGTACGGCAGCACGTACATGTTTCGTCCGAAAAACACGGGGCCGTACAT
TGACCCGTGCGAACGCGTCGCCGTGTTCCTTTTCCGGGTTGGGGGTGGGC
ATGGAGTGCGGGGCACAGCTGCGCACTTTGACATATCGGAAGGTTCCGTT
GTGGACTGGACACTGAAGGTGGCGAAACTGATCGTCAAACGCCTACAATC
TCAGTACGTGAGGTGGCCGAGACCCGAAGAGCAAGCACTCATGGCTTCGG
AATGGGAG
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