mRNA_E-siliculosus-1a_F_contig1003.86.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1003.86.1 vs. uniprot
Match: D8LDS9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDS9_ECTSI) HSP 1 Score: 1260 bits (3261), Expect = 0.000e+0 Identity = 706/877 (80.50%), Postives = 718/877 (81.87%), Query Frame = 1
Query: 1 MGKGKPCASKTEGVCATDAATAYKQGLKLCGEGAYGRALCLFDRAIAFRVDCSHYFAARANCKQAMGKFVDAYHDYVSAIRLNASKCTXXXXXXXXXXXXXXXXXXXXXXXXXCELEPTVAVHHYQRASLLHHRLARPGQAEISYGECLANTGEFDSAMTLRCLHAKGACLFEEGRAEEAVADLSRAVEMSDPSPASLHYLAKALKAVGQEKRALTVLGEALKKWEHMAPAAQLGGGPSSDNTGRHEAFFDRGVIRLGRGDDAGALLDFNKAVELSNGGRGEYFVQRARARARVAMRSEGREEAMAGVEDIEKAMELESNNPEFLFTAGVLCSRMGEYERAMGHLQLLLRSFDKQEAACTSREKTETGNKDVASRAACEFENFTASIAVNGQQPEGFLLRGRSLAGLSRQGQFQRDQAHEQAIRDFTMALSILGSKTACGFRTKSL-GGADGCIRDDSVSQRKDEAKGDEKEIDARNTKPEQDSDTKGNRTNPDVMLSENCSPRVEHNRAGADPQEASPAETKQPESHGAEGRLEESREASCRRDSRSGEVGDGMGEGGSVVGACHYARALSLQQLGRHADAVTDFNVAISEGPVSWQRFWHRATCLVELGEAYRTSAARDLRACMSMAEKGEPPPEMRNFLFQVGLAYLRLGRFALALELFDRAWKEEVRLLEQRDTKTDGPTDLGQPSPVVSVDGQIEDASLHYHRGLCLVNAGDLDDAHDAFSLAIEGRNPRGPRRPNEWGLSCVEDVANVARSAYHRERGKVRQLLRDFDGARSDFTACLASLPGKPQSKMNNCVHAAIGSGSGSSQQAHTLFRRGWSNKALGNLEEAAADFEAARLLNPHLSVNYRNAFDTELVVVDDGKPFTQPPALFHSW 2628
MGKGK ASKTEGVCATDAATAY QGLKLCGEGAYG+ALC FDRAIAFRVDCSHYFAARANCKQAMGKFVDAYHDYVSAIRLNASKCTXXXXXXXXXXXXXXXXXXXXXXXXXCELEPTVAVHHYQRASLLHHRLARPGQA ISYGECLANTGEFDSAMTLRCLHAKGACLFEEGRAEEAVADLSRAVEMSDPSPASL YLAKALKAVGQEKRALTVLGEALKKWEHMAPAAQLGGGPSSDNTGRHEAFFDRGVIRLG GDDAGALLDFNKAVELSNGGRGEYFVQRARARARVAMRSEGREEAMAGVEDIEKAMELESNNPEFLFTAGVLCSRMGEYERAMGHLQLLLRSFDKQEAA T REKTETGNKDVASRAACEFENFTASIAVNGQ+PEGFLLRGRSLAGLS +HEQAIRDFT ALSILGSK+A RT SL GGADGC RDDSVSQRKDEAKGDEKE+DARN KPEQD DTKGNRTNP+VMLSE CSPRVE+NRAG DP EASPAETK PESHG EG LEESREASCRRDSRSGEVGDGMGEGGSVVGACHYARALSLQQLGRHADAVTDF+VAISEGPVSWQRFWHRATCLV LGEAYR SA RDLRACMSMAEKGEPPPEMRNFLFQVGLAYLRLGRFALALELFD+AWKEEVRL EQRDTKT+GPTDLG SS QAHTLFRRGW+NKA+GNLEEAAADFEAARLLNPHLSVNYRNAFDTELVVVDDGKPFTQPPALFHSW
Sbjct: 1 MGKGKQGASKTEGVCATDAATAYNQGLKLCGEGAYGKALCSFDRAIAFRVDCSHYFAARANCKQAMGKFVDAYHDYVSAIRLNASKCTXXXXXXXXXXXXXXXXXXXXXXXXXCELEPTVAVHHYQRASLLHHRLARPGQAVISYGECLANTGEFDSAMTLRCLHAKGACLFEEGRAEEAVADLSRAVEMSDPSPASLQYLAKALKAVGQEKRALTVLGEALKKWEHMAPAAQLGGGPSSDNTGRHEAFFDRGVIRLGHGDDAGALLDFNKAVELSNGGRGEYFVQRARARARVAMRSEGREEAMAGVEDIEKAMELESNNPEFLFTAGVLCSRMGEYERAMGHLQLLLRSFDKQEAAST-REKTETGNKDVASRAACEFENFTASIAVNGQRPEGFLLRGRSLAGLS---------SHEQAIRDFTTALSILGSKSARSSRTTSLLGGADGCCRDDSVSQRKDEAKGDEKEVDARNAKPEQDGDTKGNRTNPEVMLSETCSPRVEYNRAGTDPHEASPAETKHPESHGDEGHLEESREASCRRDSRSGEVGDGMGEGGSVVGACHYARALSLQQLGRHADAVTDFDVAISEGPVSWQRFWHRATCLVGLGEAYRASAVRDLRACMSMAEKGEPPPEMRNFLFQVGLAYLRLGRFALALELFDQAWKEEVRLPEQRDTKTEGPTDLG-------------------------------------------------------------------------------------------------------------------------SSLQAHTLFRRGWANKAMGNLEEAAADFEAARLLNPHLSVNYRNAFDTELVVVDDGKPFTQPPALFHSW 746
BLAST of mRNA_E-siliculosus-1a_F_contig1003.86.1 vs. uniprot
Match: A0A5D6XF25_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XF25_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 1.480e-7 Identity = 57/162 (35.19%), Postives = 75/162 (46.30%), Query Frame = 1
Query: 2107 LHYHRGLCLVNAGDLDDAHDAFSLAIEGRNPRGPRRPNEWGLSCVEDVANVARSA-YHRERGKVRQLLRDFDGARSDFTACLASLPGKPQSKMNNCVHAAIGSGSGSSQQAHTLFRRGWSNKALGNLEEAAADFEAARLLNP---HLSVNYRNAFDTELVVV 2580
+ YH GL A ++F+ A+E R S E A +A Y ER K QL R +D A +DF+ LA P NN AH FRRG+++KA G+L AAADFEAA++L+P L VNY DTE V++
Sbjct: 632 VFYHIGLSCALESRHMAAIESFTAALEHS------RALSAASSASERAALLAAQLRYVHERAKALQLERYYDEAVADFSFVLAHNP-------NN---------------AHACFRRGFAHKARGDLAAAAADFEAAKMLDPTNLQLVVNYHELRDTECVIL 765 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1003.86.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1003.86.1 >prot_E-siliculosus-1a_F_contig1003.86.1 ID=prot_E-siliculosus-1a_F_contig1003.86.1|Name=mRNA_E-siliculosus-1a_F_contig1003.86.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=877bp MGKGKPCASKTEGVCATDAATAYKQGLKLCGEGAYGRALCLFDRAIAFRVback to top mRNA from alignment at E-siliculosus-1a_F_contig1003:20210..31290+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1003.86.1 ID=mRNA_E-siliculosus-1a_F_contig1003.86.1|Name=mRNA_E-siliculosus-1a_F_contig1003.86.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=11081bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1003:20210..31290+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1003:20210..31290+ >mRNA_E-siliculosus-1a_F_contig1003.86.1 ID=mRNA_E-siliculosus-1a_F_contig1003.86.1|Name=mRNA_E-siliculosus-1a_F_contig1003.86.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=5262bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1003:20210..31290+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |